Wall clock time and date at job start Tue Mar 31 2020 14:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48492 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47338 * 300.00351 * 3 2 1 6 6 H 1.48510 * 109.46694 * 59.99924 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00002 * 159.36563 * 7 2 1 9 9 N 1.36936 * 120.00339 * 339.35624 * 7 2 1 10 10 C 1.46509 * 119.99828 * 321.63006 * 9 7 2 11 11 C 1.52999 * 109.47305 * 269.99699 * 10 9 7 12 12 H 1.09005 * 109.46860 * 59.99763 * 11 10 9 13 13 O 1.42903 * 109.47057 * 300.00288 * 11 10 9 14 14 C 1.52996 * 109.47441 * 180.02562 * 11 10 9 15 15 C 1.50699 * 109.47121 * 185.00131 * 14 11 10 16 16 C 1.38261 * 119.99299 * 90.00310 * 15 14 11 17 17 C 1.38216 * 120.02596 * 179.97438 * 16 15 14 18 18 C 1.38236 * 120.01513 * 0.02562 * 17 16 15 19 19 C 1.38332 * 119.98446 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.01428 * 179.97438 * 19 18 17 21 21 C 1.38186 * 119.99186 * 269.72311 * 15 14 11 22 22 C 1.46497 * 120.00395 * 141.63128 * 9 7 2 23 23 C 1.54967 * 110.91853 * 307.52601 * 22 9 7 24 24 C 1.54272 * 104.15882 * 156.29182 * 23 22 9 25 25 C 1.53870 * 106.64231 * 336.45072 * 24 23 22 26 26 C 1.54268 * 106.59632 * 359.97065 * 25 24 23 27 27 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46778 * 29.99998 * 10 9 7 29 29 H 1.08997 * 109.46778 * 149.99983 * 10 9 7 30 30 H 0.96704 * 113.99883 * 299.99721 * 13 11 10 31 31 H 1.08997 * 109.46870 * 305.00214 * 14 11 10 32 32 H 1.09004 * 109.47019 * 64.99733 * 14 11 10 33 33 H 1.08003 * 119.98817 * 0.02562 * 16 15 14 34 34 H 1.08003 * 119.99574 * 180.02562 * 17 16 15 35 35 H 1.08000 * 120.00920 * 179.97438 * 18 17 16 36 36 H 1.08007 * 120.00971 * 0.02562 * 21 15 14 37 37 H 1.09004 * 110.67600 * 184.22816 * 22 9 7 38 38 H 1.09001 * 110.47391 * 37.64719 * 23 22 9 39 39 H 1.08997 * 110.53210 * 274.97595 * 23 22 9 40 40 H 1.08997 * 110.03114 * 217.13645 * 24 23 22 41 41 H 1.09004 * 110.02773 * 95.75715 * 24 23 22 42 42 H 1.08993 * 110.03532 * 119.25232 * 25 24 23 43 43 H 1.09000 * 110.03298 * 240.64098 * 25 24 23 44 44 H 1.09007 * 110.48703 * 142.28968 * 26 25 24 45 45 H 1.08997 * 110.48990 * 264.79659 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0382 -1.2321 -0.3302 9 7 1.3914 -2.3502 0.4170 10 6 0.4671 -2.3125 1.5531 11 6 1.2411 -2.5626 2.8489 12 1 2.0010 -1.7910 2.9729 13 8 1.8696 -3.8446 2.7885 14 6 0.2758 -2.5239 4.0353 15 6 1.0536 -2.6475 5.3201 16 6 1.5185 -1.5127 5.9585 17 6 2.2315 -1.6252 7.1372 18 6 2.4807 -2.8727 7.6782 19 6 2.0158 -4.0085 7.0399 20 17 2.3289 -5.5755 7.7182 21 6 1.2971 -3.8948 5.8629 22 6 1.6537 -3.6161 -0.2721 23 6 1.4318 -3.4711 -1.7990 24 6 2.2918 -4.5948 -2.4136 25 6 3.3856 -4.9262 -1.3834 26 6 3.1533 -3.9919 -0.1781 27 1 -0.4849 0.8401 0.0004 28 1 -0.0123 -1.3346 1.5991 29 1 -0.2927 -3.0841 1.4290 30 1 1.2520 -4.5806 2.6784 31 1 -0.2690 -1.5798 4.0297 32 1 -0.4299 -3.3510 3.9566 33 1 1.3237 -0.5378 5.5365 34 1 2.5941 -0.7384 7.6357 35 1 3.0382 -2.9606 8.5990 36 1 0.9303 -4.7810 5.3662 37 1 1.0296 -4.4120 0.1343 38 1 1.7759 -2.4958 -2.1433 39 1 0.3806 -3.6156 -2.0480 40 1 2.7459 -4.2514 -3.3431 41 1 1.6769 -5.4750 -2.6016 42 1 3.3010 -5.9669 -1.0708 43 1 4.3706 -4.7445 -1.8132 44 1 3.3573 -4.5159 0.7557 45 1 3.7775 -3.1020 -0.2592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287844636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:09 Heat of formation + Delta-G solvation = -46.793231 kcal Electronic energy + Delta-G solvation = -25664.914314 eV Core-core repulsion = 22093.074027 eV Total energy + Delta-G solvation = -3571.840287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.50605 -39.39921 -38.05324 -37.32535 -35.72340 -33.68381 -32.86957 -31.65848 -30.42802 -29.27522 -28.10352 -27.27607 -24.66906 -23.58816 -22.59073 -21.91376 -21.04538 -20.82559 -18.46853 -17.75968 -17.26547 -16.88552 -16.59118 -16.36639 -16.25808 -15.97638 -15.52164 -15.26179 -15.01156 -14.64385 -14.29700 -14.18096 -13.98302 -13.89719 -13.23691 -12.97110 -12.87482 -12.75987 -12.54690 -12.44586 -12.41014 -12.20672 -12.12600 -11.92175 -11.83320 -11.76439 -11.70359 -11.64196 -11.49793 -11.14107 -11.06608 -10.73601 -10.45070 -9.77594 -9.54935 -8.37530 -7.72484 -5.35651 0.23109 0.37311 1.17335 1.42200 1.47845 1.56095 2.53036 2.69650 3.27424 3.54686 3.79120 3.84605 3.95337 4.07822 4.09158 4.18195 4.26523 4.29715 4.38250 4.49484 4.53922 4.64475 4.71400 4.77537 4.82470 4.88416 4.98076 4.99235 5.02381 5.06278 5.11244 5.26456 5.28604 5.29192 5.36636 5.40153 5.47647 5.63008 5.66093 5.68218 5.74040 5.74559 5.84919 5.90480 6.56007 7.09268 7.27954 7.98820 8.49758 9.18878 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.003976 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.183850 B = 7040.652194 C = 8690.495673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.030 4.030 3 Si 0.939 3.061 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.043 0.957 9 N -0.580 5.580 10 C 0.123 3.877 11 C 0.114 3.886 12 H 0.059 0.941 13 O -0.559 6.559 14 C -0.104 4.104 15 C -0.062 4.062 16 C -0.131 4.131 17 C -0.106 4.106 18 C -0.125 4.125 19 C -0.043 4.043 20 Cl -0.074 7.074 21 C -0.105 4.105 22 C 0.176 3.824 23 C -0.130 4.130 24 C -0.114 4.114 25 C -0.115 4.115 26 C -0.123 4.123 27 H 0.249 0.751 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.371 0.629 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -9.205 11.755 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.227 4.227 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.061 0.939 9 N -0.298 5.298 10 C -0.004 4.004 11 C 0.053 3.947 12 H 0.077 0.923 13 O -0.364 6.364 14 C -0.142 4.142 15 C -0.062 4.062 16 C -0.149 4.149 17 C -0.124 4.124 18 C -0.144 4.144 19 C -0.070 4.070 20 Cl -0.045 7.045 21 C -0.123 4.123 22 C 0.069 3.931 23 C -0.170 4.170 24 C -0.152 4.152 25 C -0.153 4.153 26 C -0.162 4.162 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.218 0.782 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.146 0.854 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.062 -8.851 11.868 14.948 hybrid contribution -0.181 0.970 -0.273 1.023 sum 1.881 -7.882 11.594 14.145 Atomic orbital electron populations 1.70096 1.06275 1.25544 1.53929 1.25624 0.95529 1.00589 1.00995 0.85648 0.78896 0.81626 0.76950 1.20125 1.22141 1.21270 1.18943 0.93185 0.86525 1.38542 0.93931 1.43771 1.51326 1.03594 1.31158 1.21524 0.91225 1.01554 0.86060 1.22283 0.94335 0.84943 0.93175 0.92288 1.86575 1.38094 1.15681 1.96013 1.21274 0.97596 1.04015 0.91360 1.19841 0.97914 0.92760 0.95681 1.21415 0.98532 0.98841 0.96081 1.21350 0.97705 0.97869 0.95510 1.21262 1.00963 0.90908 1.01242 1.21044 1.02578 0.86744 0.96605 1.98352 1.94663 1.26785 1.84733 1.20975 0.98948 0.98085 0.94324 1.21445 0.93992 0.87318 0.90321 1.22632 0.97984 0.98042 0.98331 1.22030 0.97128 0.98021 0.98010 1.22043 0.98277 0.99508 0.95459 1.22560 0.98322 0.97771 0.97553 0.94134 0.91281 0.94688 0.78213 0.90315 0.89181 0.85415 0.82882 0.83361 0.84553 0.91847 0.94172 0.94106 0.92407 0.90846 0.90628 0.92320 0.92133 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.88 11.48 21.65 0.25 -50.63 16 2 C -0.03 -1.62 4.97 84.86 0.42 -1.20 16 3 Si 0.94 43.90 29.60 68.60 2.03 45.93 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.24 -12.72 7.78 84.03 0.65 -12.06 16 8 H 0.04 2.37 6.78 -2.91 -0.02 2.35 16 9 N -0.58 -26.98 2.41 -670.74 -1.61 -28.60 16 10 C 0.12 5.20 4.98 86.38 0.43 5.63 16 11 C 0.11 4.06 3.23 30.59 0.10 4.16 16 12 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 13 O -0.56 -18.48 11.71 -148.98 -1.74 -20.22 16 14 C -0.10 -2.95 5.03 29.85 0.15 -2.80 16 15 C -0.06 -1.66 4.96 -19.87 -0.10 -1.76 16 16 C -0.13 -3.36 9.70 22.27 0.22 -3.14 16 17 C -0.11 -2.31 10.05 22.26 0.22 -2.08 16 18 C -0.13 -2.70 9.83 22.29 0.22 -2.48 16 19 C -0.04 -1.03 6.32 22.33 0.14 -0.89 16 20 Cl -0.07 -1.61 28.96 -2.72 -0.08 -1.69 16 21 C -0.10 -2.65 9.20 22.29 0.20 -2.44 16 22 C 0.18 7.03 2.87 46.31 0.13 7.16 16 23 C -0.13 -5.18 6.35 31.70 0.20 -4.98 16 24 C -0.11 -3.48 6.80 31.32 0.21 -3.27 16 25 C -0.11 -3.40 6.80 31.32 0.21 -3.19 16 26 C -0.12 -4.52 6.39 31.67 0.20 -4.32 16 27 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 28 H 0.07 3.41 5.55 -2.39 -0.01 3.40 16 29 H 0.03 1.37 7.92 -2.39 -0.02 1.35 16 30 H 0.37 9.63 9.05 -74.05 -0.67 8.96 16 31 H 0.08 2.29 8.09 -2.39 -0.02 2.27 16 32 H 0.09 2.19 8.08 -2.39 -0.02 2.17 16 33 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 37 H 0.06 2.32 7.85 -2.39 -0.02 2.31 16 38 H 0.04 1.87 7.07 -2.39 -0.02 1.86 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 2.18 7.66 -2.38 -0.02 2.16 16 45 H 0.03 1.42 6.67 -2.39 -0.02 1.41 16 Total: -1.00 -59.97 374.84 2.78 -57.19 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.31 Total: 25.68 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 3.62 Total: -27.67 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -1.36 Total: -79.23 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.74 Total: -20.22 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -59.97 2.78 -57.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287844636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.399 kcal (2) G-P(sol) polarization free energy of solvation -59.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds