Wall clock time and date at job start Tue Mar 31 2020 15:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38643 * 120.40493 * 2 1 4 4 C 1.38585 * 118.53618 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.40799 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49521 * 343.61918 * 5 4 3 7 7 C 1.52997 * 60.00026 * 252.51279 * 6 5 4 8 8 N 1.32288 * 119.19172 * 359.74681 * 4 3 2 9 9 C 1.32418 * 120.74779 * 0.51024 * 8 4 3 10 10 N 1.38834 * 119.20737 * 179.75823 * 9 8 4 11 11 C 1.34772 * 120.00287 * 179.73137 * 10 9 8 12 12 O 1.21542 * 119.99542 * 359.97438 * 11 10 9 13 13 C 1.47837 * 120.00206 * 180.02562 * 11 10 9 14 14 C 1.39936 * 120.02861 * 359.95120 * 13 11 10 15 15 C 1.38325 * 120.35822 * 179.97438 * 14 13 11 16 16 C 1.37757 * 120.41387 * 0.04520 * 15 14 13 17 17 C 1.40757 * 120.04261 * 359.97438 * 16 15 14 18 18 C 1.41439 * 120.17482 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00172 * 335.20263 * 18 17 16 20 20 C 1.39938 * 119.99845 * 155.20907 * 18 17 16 21 21 N 1.30823 * 120.00173 * 342.29192 * 20 18 17 22 22 Si 1.86799 * 119.99730 * 162.29595 * 20 18 17 23 23 H 1.48496 * 109.47610 * 59.99930 * 22 20 18 24 24 H 1.48499 * 109.46890 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47212 * 299.99406 * 22 20 18 26 26 C 1.39020 * 120.02543 * 179.97438 * 13 11 10 27 27 N 1.32248 * 120.40527 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46761 * 269.97531 * 1 2 3 29 29 H 1.09003 * 109.47403 * 29.97355 * 1 2 3 30 30 H 1.08995 * 109.47167 * 149.97874 * 1 2 3 31 31 H 1.07997 * 120.72973 * 0.02562 * 3 2 1 32 32 H 1.09000 * 115.55122 * 129.32582 * 5 4 3 33 33 H 1.09005 * 117.50057 * 0.02562 * 6 5 4 34 34 H 1.09003 * 117.49898 * 145.01850 * 6 5 4 35 35 H 1.09005 * 117.49353 * 252.51277 * 7 6 5 36 36 H 1.08997 * 117.51675 * 107.48479 * 7 6 5 37 37 H 0.97000 * 120.00233 * 359.72681 * 10 9 8 38 38 H 1.08001 * 119.82106 * 0.02562 * 14 13 11 39 39 H 1.07991 * 119.79316 * 180.02562 * 15 14 13 40 40 H 1.07998 * 119.97967 * 180.02562 * 16 15 14 41 41 H 0.97001 * 120.00593 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.20578 * 0.25590 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1958 0.0000 4 6 3.5938 1.1506 -0.0005 5 6 4.3986 2.4247 0.0000 6 6 3.6748 3.7175 -0.3816 7 6 4.6753 3.0861 -1.3516 8 7 4.2010 -0.0247 0.0041 9 6 3.5008 -1.1486 -0.0010 10 7 4.1710 -2.3644 -0.0010 11 6 3.4742 -3.5180 -0.0007 12 8 2.2590 -3.4939 0.0002 13 6 4.1879 -4.8127 -0.0001 14 6 5.5869 -4.8411 -0.0011 15 6 6.2617 -6.0486 0.0000 16 6 5.5648 -7.2369 0.0010 17 6 4.1572 -7.2284 0.0015 18 6 3.4389 -8.4468 0.0030 19 1 3.8958 -9.3436 -0.3884 20 6 2.1360 -8.4901 0.5117 21 7 1.7043 -7.5293 1.2875 22 14 1.0131 -9.9201 0.0831 23 1 1.6247 -11.1885 0.5547 24 1 -0.3035 -9.7307 0.7432 25 1 0.8256 -9.9783 -1.3889 26 6 3.4696 -6.0030 0.0008 27 7 2.1764 -1.1406 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5141 31 1 1.6874 2.1415 0.0004 32 1 5.1768 2.4889 0.7605 33 1 2.6164 3.6466 -0.6327 34 1 3.9766 4.6326 0.1280 35 1 5.6355 3.5857 -1.4803 36 1 4.2756 2.5994 -2.2413 37 1 5.1408 -2.3837 -0.0014 38 1 6.1429 -3.9152 -0.0017 39 1 7.3415 -6.0599 -0.0003 40 1 6.0987 -8.1757 0.0022 41 1 0.8013 -7.5595 1.6405 42 1 2.3897 -5.9860 -0.0031 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291620132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:43 Heat of formation + Delta-G solvation = 54.708913 kcal Electronic energy + Delta-G solvation = -25680.838252 eV Core-core repulsion = 22012.291935 eV Total energy + Delta-G solvation = -3668.546317 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.52034 -40.90128 -38.97742 -38.22628 -36.40594 -35.61693 -34.90056 -32.80547 -31.65759 -31.30025 -29.47155 -27.33168 -26.33471 -25.18130 -23.67606 -23.09900 -22.78747 -22.18222 -20.91274 -19.77959 -18.88641 -18.48071 -17.49435 -17.15718 -16.93529 -16.85460 -16.45017 -16.17722 -15.78049 -15.50116 -15.21042 -15.07411 -14.57907 -14.35700 -14.31827 -14.04640 -13.52647 -13.39537 -13.03039 -12.95363 -12.83292 -12.61751 -12.46593 -12.36757 -12.24001 -12.11840 -11.81473 -11.62235 -11.56519 -11.42163 -11.09021 -11.04934 -10.89340 -10.07401 -9.78784 -9.52155 -9.43945 -8.69164 -6.40854 -0.25981 0.05010 0.38898 0.97278 1.35728 1.41839 1.46858 1.49938 1.94899 2.17820 2.61085 2.74942 2.83126 3.02819 3.17281 3.52002 3.64802 3.88487 3.89616 4.02592 4.09739 4.20903 4.30128 4.36630 4.46414 4.52803 4.66057 4.72902 4.79301 4.86010 4.93984 5.02018 5.04457 5.09189 5.12101 5.14825 5.26412 5.27219 5.45103 5.49150 5.74714 5.84874 5.98663 6.05942 6.09729 6.25298 6.54483 6.84224 6.89600 6.99173 7.22275 8.27640 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.002889 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.692744 B = 9691.015329 C =10993.622125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.182 3.818 3 C -0.250 4.250 4 C 0.224 3.776 5 C -0.132 4.132 6 C -0.143 4.143 7 C -0.158 4.158 8 N -0.561 5.561 9 C 0.527 3.473 10 N -0.630 5.630 11 C 0.560 3.440 12 O -0.510 6.510 13 C -0.135 4.135 14 C -0.201 4.201 15 C -0.092 4.092 16 C -0.212 4.212 17 C 0.068 3.932 18 C -0.494 4.494 19 H 0.087 0.913 20 C 0.029 3.971 21 N -0.824 5.824 22 Si 0.983 3.017 23 H -0.251 1.251 24 H -0.273 1.273 25 H -0.260 1.260 26 C -0.124 4.124 27 N -0.553 5.553 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.062 0.938 31 H 0.188 0.812 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.431 0.569 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.113 0.887 41 H 0.287 0.713 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 21.417 -2.637 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.035 3.965 3 C -0.273 4.273 4 C 0.078 3.922 5 C -0.151 4.151 6 C -0.180 4.180 7 C -0.196 4.196 8 N -0.283 5.283 9 C 0.171 3.829 10 N -0.281 5.281 11 C 0.349 3.651 12 O -0.382 6.382 13 C -0.138 4.138 14 C -0.221 4.221 15 C -0.109 4.109 16 C -0.232 4.232 17 C 0.066 3.934 18 C -0.523 4.523 19 H 0.105 0.895 20 C -0.186 4.186 21 N -0.449 5.449 22 Si 0.804 3.196 23 H -0.175 1.175 24 H -0.197 1.197 25 H -0.185 1.185 26 C -0.144 4.144 27 N -0.276 5.276 28 H 0.113 0.887 29 H 0.138 0.862 30 H 0.081 0.919 31 H 0.205 0.795 32 H 0.148 0.852 33 H 0.129 0.871 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.273 0.727 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.604 20.495 -2.472 20.706 hybrid contribution -0.468 -0.439 0.114 0.652 sum 1.137 20.056 -2.357 20.226 Atomic orbital electron populations 1.20885 0.85597 1.04768 1.04561 1.22402 0.99196 0.87177 0.87680 1.22729 0.95014 1.01039 1.08474 1.21152 0.91732 0.91482 0.87876 1.20863 1.03362 0.88174 1.02713 1.23279 0.98959 0.94544 1.01224 1.23064 1.02500 1.02267 0.91762 1.67546 1.41396 0.97767 1.21548 1.19561 0.85808 0.86198 0.91304 1.43109 1.11659 1.01737 1.71592 1.19024 0.87015 0.83960 0.75098 1.90784 1.14675 1.86992 1.45725 1.19534 0.94901 0.90542 1.08864 1.20845 0.91175 0.98566 1.11496 1.20919 0.99777 0.91588 0.98657 1.21448 0.93351 0.98040 1.10335 1.17940 0.92696 0.92980 0.89813 1.19854 0.99100 0.96157 1.37214 0.89460 1.26881 0.99741 1.00113 0.91877 1.69878 1.18790 1.33604 1.22671 0.85230 0.76784 0.77990 0.79641 1.17487 1.19724 1.18472 1.21413 0.99314 0.91246 1.02459 1.68351 1.07643 1.32291 1.19267 0.88667 0.86225 0.91906 0.79499 0.85167 0.87076 0.85447 0.86280 0.89681 0.72720 0.84970 0.84050 0.86887 0.90227 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.17 10.22 71.24 0.73 -1.44 16 2 C 0.18 5.32 6.82 42.59 0.29 5.61 16 3 C -0.25 -5.52 9.11 22.45 0.20 -5.32 16 4 C 0.22 5.56 6.50 42.57 0.28 5.83 16 5 C -0.13 -2.14 6.25 -11.54 -0.07 -2.21 16 6 C -0.14 -1.27 9.83 30.59 0.30 -0.97 16 7 C -0.16 -1.97 10.23 30.59 0.31 -1.66 16 8 N -0.56 -18.03 10.39 -185.79 -1.93 -19.97 16 9 C 0.53 20.28 8.38 261.32 2.19 22.47 16 10 N -0.63 -24.70 5.35 -316.31 -1.69 -26.39 16 11 C 0.56 26.76 7.73 86.78 0.67 27.44 16 12 O -0.51 -28.03 14.53 -3.85 -0.06 -28.08 16 13 C -0.13 -6.61 5.87 -20.14 -0.12 -6.72 16 14 C -0.20 -8.18 9.55 22.70 0.22 -7.97 16 15 C -0.09 -3.66 10.01 22.18 0.22 -3.44 16 16 C -0.21 -9.89 9.78 22.77 0.22 -9.66 16 17 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 18 C -0.49 -26.85 9.05 23.47 0.21 -26.64 16 19 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 20 C 0.03 1.53 5.14 85.26 0.44 1.97 16 21 N -0.82 -46.30 10.97 21.82 0.24 -46.06 16 22 Si 0.98 39.73 29.59 68.60 2.03 41.76 16 23 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 C -0.12 -6.97 8.23 23.01 0.19 -6.78 16 27 N -0.55 -22.15 7.81 -185.77 -1.45 -23.60 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 29 H 0.12 1.50 8.10 -2.39 -0.02 1.48 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.19 2.34 6.38 -2.91 -0.02 2.32 16 32 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.11 0.78 6.46 -2.38 -0.02 0.76 16 34 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.43 14.12 6.83 -92.71 -0.63 13.48 16 38 H 0.13 4.23 6.38 -2.91 -0.02 4.21 16 39 H 0.14 4.38 8.06 -2.92 -0.02 4.35 16 40 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 42 H 0.10 6.29 5.77 -2.91 -0.02 6.28 16 Total: -1.00 -75.76 359.30 3.75 -72.01 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.44 Total: 36.23 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 6.17 Total: -5.90 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -4.83 Total: -116.02 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.06 Total: -28.08 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -75.76 3.75 -72.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291620132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.720 kcal (2) G-P(sol) polarization free energy of solvation -75.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds