Wall clock time and date at job start Tue Mar 31 2020 15:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38633 * 120.40927 * 2 1 4 4 C 1.38598 * 118.54323 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.40397 * 180.02562 * 4 3 2 6 6 C 1.52994 * 117.50418 * 343.62741 * 5 4 3 7 7 C 1.52995 * 60.00177 * 252.50798 * 6 5 4 8 8 N 1.32281 * 119.18693 * 359.73886 * 4 3 2 9 9 C 1.32423 * 120.74703 * 0.54079 * 8 4 3 10 10 N 1.38810 * 119.20149 * 179.71962 * 9 8 4 11 11 C 1.34780 * 119.99595 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00105 * 359.72565 * 11 10 9 13 13 C 1.47573 * 119.99951 * 179.72547 * 11 10 9 14 14 C 1.40044 * 119.89788 * 359.72788 * 13 11 10 15 15 C 1.36304 * 120.10386 * 179.71952 * 14 13 11 16 16 C 1.40908 * 119.89382 * 0.57343 * 15 14 13 17 17 C 1.41086 * 120.09895 * 179.67612 * 16 15 14 18 18 H 1.08009 * 119.99617 * 205.08236 * 17 16 15 19 19 C 1.40229 * 120.00582 * 25.08683 * 17 16 15 20 20 N 1.30644 * 119.99775 * 18.01619 * 19 17 16 21 21 Si 1.86798 * 120.00540 * 198.01642 * 19 17 16 22 22 H 1.48499 * 109.47424 * 94.52363 * 21 19 17 23 23 H 1.48498 * 109.47259 * 214.52863 * 21 19 17 24 24 H 1.48503 * 109.46929 * 334.52654 * 21 19 17 25 25 C 1.40895 * 119.79567 * 359.70029 * 16 15 14 26 26 C 1.36305 * 119.89808 * 359.97438 * 25 16 15 27 27 N 1.32258 * 120.40345 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46544 * 269.97342 * 1 2 3 29 29 H 1.08997 * 109.46820 * 29.97278 * 1 2 3 30 30 H 1.09001 * 109.47107 * 149.97618 * 1 2 3 31 31 H 1.08006 * 120.72838 * 0.04982 * 3 2 1 32 32 H 1.08999 * 115.54316 * 129.33837 * 5 4 3 33 33 H 1.09005 * 117.49609 * 0.02562 * 6 5 4 34 34 H 1.09001 * 117.49949 * 145.01213 * 6 5 4 35 35 H 1.08998 * 117.49860 * 252.50799 * 7 6 5 36 36 H 1.09004 * 117.51821 * 107.47982 * 7 6 5 37 37 H 0.97001 * 120.00490 * 359.73100 * 10 9 8 38 38 H 1.07991 * 119.94659 * 359.97438 * 14 13 11 39 39 H 1.07995 * 120.05548 * 180.24568 * 15 14 13 40 40 H 0.96996 * 120.00413 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.05250 * 179.97438 * 25 16 15 42 42 H 1.08001 * 119.95197 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2088 1.1956 0.0000 4 6 3.5940 1.1505 -0.0005 5 6 4.3986 2.4247 0.0000 6 6 3.6748 3.7175 -0.3814 7 6 4.6753 3.0862 -1.3516 8 7 4.2012 -0.0248 0.0042 9 6 3.5008 -1.1486 -0.0013 10 7 4.1710 -2.3642 -0.0020 11 6 3.4741 -3.5178 -0.0080 12 8 2.2585 -3.4938 -0.0079 13 6 4.1865 -4.8102 -0.0149 14 6 5.5867 -4.8354 -0.0208 15 6 6.2490 -6.0267 -0.0214 16 6 5.5226 -7.2341 -0.0282 17 6 6.2037 -8.4696 -0.0357 18 1 5.7223 -9.3492 -0.4372 19 6 7.5056 -8.5558 0.4782 20 7 7.9592 -7.6196 1.2685 21 14 8.5913 -10.0092 0.0330 22 1 9.4436 -9.6526 -1.1297 23 1 9.4537 -10.3559 1.1911 24 1 7.7397 -11.1745 -0.3164 25 6 4.1140 -7.2037 -0.0280 26 6 3.4602 -6.0077 -0.0207 27 7 2.1764 -1.1407 -0.0005 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6874 2.1415 0.0008 32 1 5.1770 2.4888 0.7604 33 1 2.6164 3.6465 -0.6323 34 1 3.9767 4.6325 0.1283 35 1 5.6354 3.5859 -1.4802 36 1 4.2756 2.5996 -2.2413 37 1 5.1408 -2.3835 -0.0024 38 1 6.1425 -3.9096 -0.0208 39 1 7.3288 -6.0453 -0.0219 40 1 8.8598 -7.6789 1.6237 41 1 3.5530 -8.1266 -0.0337 42 1 2.3805 -5.9833 -0.0202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291622441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:46 Heat of formation + Delta-G solvation = 52.261414 kcal Electronic energy + Delta-G solvation = -25366.475318 eV Core-core repulsion = 21697.822869 eV Total energy + Delta-G solvation = -3668.652449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.45186 -40.77438 -39.05143 -38.21186 -36.27980 -35.72286 -34.86771 -32.74466 -31.66787 -31.35520 -29.44618 -27.95688 -26.11108 -24.74364 -23.56682 -23.10828 -22.75489 -22.23269 -20.88339 -19.46624 -19.30771 -18.49727 -17.61205 -17.23012 -17.05658 -16.81825 -16.15202 -15.91442 -15.78074 -15.43015 -15.18289 -15.06976 -14.55487 -14.33892 -14.00688 -13.95924 -13.74147 -13.37584 -13.28083 -12.95027 -12.89878 -12.68954 -12.49925 -12.40026 -12.30767 -11.99195 -11.75514 -11.56380 -11.42614 -11.41547 -11.16325 -11.01204 -10.81414 -10.01913 -9.73197 -9.62050 -9.45257 -8.83942 -6.52826 -0.18882 0.08659 0.43447 1.11493 1.37952 1.42231 1.53726 1.54235 2.00708 2.15216 2.60100 2.75192 2.87117 3.06540 3.24464 3.57790 3.63886 3.89157 4.03422 4.08380 4.12490 4.22908 4.25965 4.33786 4.40210 4.48794 4.70360 4.78043 4.79120 4.88626 4.97554 4.98694 5.02823 5.09098 5.13177 5.17437 5.23367 5.26608 5.52078 5.55221 5.71667 5.83614 5.94722 6.14210 6.16119 6.18701 6.48978 6.71955 6.82945 7.12693 7.30476 8.11415 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.002480 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.585731 B =11287.638325 C =12421.607018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.181 3.819 3 C -0.253 4.253 4 C 0.223 3.777 5 C -0.134 4.134 6 C -0.141 4.141 7 C -0.160 4.160 8 N -0.568 5.568 9 C 0.528 3.472 10 N -0.638 5.638 11 C 0.569 3.431 12 O -0.530 6.530 13 C -0.294 4.294 14 C -0.055 4.055 15 C -0.195 4.195 16 C 0.103 3.897 17 C -0.465 4.465 18 H 0.089 0.911 19 C 0.037 3.963 20 N -0.794 5.794 21 Si 0.990 3.010 22 H -0.259 1.259 23 H -0.265 1.265 24 H -0.256 1.256 25 C -0.250 4.250 26 C -0.025 4.025 27 N -0.547 5.547 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.187 0.813 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.426 0.574 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.299 0.701 41 H 0.109 0.891 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 19.661 -2.343 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.035 3.965 3 C -0.276 4.276 4 C 0.077 3.923 5 C -0.153 4.153 6 C -0.178 4.178 7 C -0.197 4.197 8 N -0.291 5.291 9 C 0.172 3.828 10 N -0.288 5.288 11 C 0.363 3.637 12 O -0.406 6.406 13 C -0.299 4.299 14 C -0.074 4.074 15 C -0.215 4.215 16 C 0.100 3.900 17 C -0.491 4.491 18 H 0.107 0.893 19 C -0.183 4.183 20 N -0.417 5.417 21 Si 0.809 3.191 22 H -0.183 1.183 23 H -0.189 1.189 24 H -0.179 1.179 25 C -0.269 4.269 26 C -0.044 4.044 27 N -0.269 5.269 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.204 0.796 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.266 0.734 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.138 18.738 -2.165 19.311 hybrid contribution 0.755 -0.365 0.096 0.844 sum -3.383 18.373 -2.069 18.796 Atomic orbital electron populations 1.20873 0.85326 1.04815 1.04593 1.22449 0.99302 0.87159 0.87603 1.22710 0.94873 1.01169 1.08858 1.21118 0.91826 0.91387 0.88008 1.20860 1.03391 0.88414 1.02615 1.23271 0.98963 0.94467 1.01084 1.23057 1.02489 1.02370 0.91827 1.67546 1.41695 0.97983 1.21829 1.19613 0.85930 0.86177 0.91052 1.43214 1.11486 1.02110 1.72015 1.18681 0.86823 0.83404 0.74804 1.90726 1.14239 1.87030 1.48597 1.18914 0.93575 0.90751 1.26663 1.20709 0.92366 0.97722 0.96566 1.20987 0.99618 0.91783 1.09066 1.18165 0.91844 0.94166 0.85858 1.20181 0.99162 0.96145 1.33657 0.89251 1.26986 0.98958 1.00727 0.91656 1.69761 1.18523 1.33717 1.19727 0.85062 0.77565 0.77280 0.79168 1.18334 1.18929 1.17912 1.20863 0.94314 0.96577 1.15183 1.20481 0.98311 0.91669 0.93915 1.68380 1.07293 1.31962 1.19291 0.88581 0.86462 0.91571 0.79613 0.85456 0.86932 0.85495 0.86451 0.89660 0.73385 0.86343 0.86732 0.89015 0.87261 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 10.22 71.24 0.73 -1.20 16 2 C 0.18 5.11 6.82 42.59 0.29 5.40 16 3 C -0.25 -5.55 9.11 22.45 0.20 -5.34 16 4 C 0.22 5.67 6.50 42.58 0.28 5.95 16 5 C -0.13 -2.31 6.25 -11.54 -0.07 -2.38 16 6 C -0.14 -1.33 9.83 30.59 0.30 -1.03 16 7 C -0.16 -2.15 10.23 30.59 0.31 -1.83 16 8 N -0.57 -18.88 10.39 -185.80 -1.93 -20.81 16 9 C 0.53 20.38 8.38 261.33 2.19 22.57 16 10 N -0.64 -25.43 5.35 -316.53 -1.69 -27.12 16 11 C 0.57 26.10 7.72 86.71 0.67 26.77 16 12 O -0.53 -26.77 14.51 -3.98 -0.06 -26.82 16 13 C -0.29 -13.89 5.89 -19.94 -0.12 -14.01 16 14 C -0.05 -2.48 9.47 22.26 0.21 -2.27 16 15 C -0.20 -9.74 8.63 22.47 0.19 -9.55 16 16 C 0.10 5.34 5.57 -21.28 -0.12 5.22 16 17 C -0.46 -23.18 9.04 23.45 0.21 -22.97 16 18 H 0.09 4.25 7.91 -2.91 -0.02 4.23 16 19 C 0.04 1.67 5.13 85.35 0.44 2.11 16 20 N -0.79 -37.81 10.99 21.87 0.24 -37.57 16 21 Si 0.99 34.40 29.60 68.60 2.03 36.43 16 22 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 23 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 24 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16 25 C -0.25 -12.35 9.73 22.47 0.22 -12.13 16 26 C -0.02 -1.19 9.52 22.26 0.21 -0.98 16 27 N -0.55 -21.17 7.80 -185.79 -1.45 -22.62 16 28 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.12 1.30 8.09 -2.39 -0.02 1.28 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.19 2.29 6.38 -2.91 -0.02 2.28 16 32 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.11 0.81 6.46 -2.38 -0.02 0.80 16 34 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.43 15.04 6.81 -92.71 -0.63 14.41 16 38 H 0.12 4.53 6.37 -2.92 -0.02 4.51 16 39 H 0.11 5.77 6.19 -2.91 -0.02 5.75 16 40 H 0.30 12.60 8.29 -92.71 -0.77 11.83 16 41 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 42 H 0.11 4.98 7.63 -2.91 -0.02 4.96 16 Total: -1.00 -68.49 359.07 3.73 -64.76 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: 0.45 Total: 39.43 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 6.15 Total: -5.68 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -4.83 Total: -108.12 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.06 Total: -26.82 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Total: -68.49 3.73 -64.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291622441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.017 kcal (2) G-P(sol) polarization free energy of solvation -68.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds