Wall clock time and date at job start Tue Mar 31 2020 14:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 C 1.53009 * 109.45003 * 181.24476 * 12 11 10 14 14 N 1.46502 * 109.47028 * 64.78861 * 13 12 11 15 15 C 1.39842 * 119.99815 * 180.02562 * 14 13 12 16 16 C 1.38829 * 120.07924 * 359.72144 * 15 14 13 17 17 C 1.38158 * 119.95168 * 179.74861 * 16 15 14 18 18 C 1.38271 * 120.10641 * 0.50591 * 17 16 15 19 19 N 1.48009 * 119.91749 * 179.74834 * 18 17 16 20 20 O 1.21798 * 119.99931 * 180.02562 * 19 18 17 21 21 O 1.21801 * 120.00217 * 0.02562 * 19 18 17 22 22 C 1.38286 * 120.16571 * 359.76982 * 18 17 16 23 23 C 1.38287 * 120.04647 * 359.97438 * 22 18 17 24 24 F 1.35100 * 120.05514 * 179.97438 * 23 22 18 25 25 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 26 26 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 27 27 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 29 29 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 30 30 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 31 31 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 32 32 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 33 33 H 1.08997 * 109.46629 * 184.78935 * 13 12 11 34 34 H 1.09001 * 109.46604 * 304.78868 * 13 12 11 35 35 H 0.96993 * 120.00363 * 359.97438 * 14 13 12 36 36 H 1.08005 * 120.02472 * 359.97438 * 16 15 14 37 37 H 1.08002 * 119.94736 * 180.25749 * 17 16 15 38 38 H 1.07995 * 119.98020 * 179.97438 * 22 18 17 39 39 H 1.09002 * 109.49848 * 178.74812 * 25 12 11 40 40 H 1.08999 * 109.49849 * 58.64620 * 25 12 11 41 41 H 1.09004 * 109.59094 * 246.19900 * 26 9 7 42 42 H 1.09001 * 109.59077 * 6.49172 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 6 6.1998 -2.6893 -3.1896 14 7 6.9262 -1.7199 -4.0136 15 6 7.6231 -2.1492 -5.1475 16 6 7.6324 -3.4945 -5.4905 17 6 8.3175 -3.9150 -6.6142 18 6 9.0025 -2.9997 -7.3919 19 7 9.7396 -3.4557 -8.5917 20 8 10.3439 -2.6508 -9.2775 21 8 9.7419 -4.6358 -8.8931 22 6 9.0010 -1.6595 -7.0513 23 6 8.3132 -1.2305 -5.9309 24 9 8.3121 0.0787 -5.5977 25 6 4.8755 -2.9898 -1.0921 26 6 4.2351 -2.2628 0.0946 27 1 -0.4850 0.8401 0.0004 28 1 2.9908 0.3501 -1.7559 29 1 4.5579 0.3822 -0.9097 30 1 3.7035 -1.5726 -3.0945 31 1 4.9277 -0.2876 -3.2372 32 1 6.2781 -1.3980 -1.4672 33 1 6.8970 -3.4329 -2.8037 34 1 5.4397 -3.1833 -3.7948 35 1 6.9232 -0.7802 -3.7732 36 1 7.1015 -4.2112 -4.8814 37 1 8.3212 -4.9610 -6.8833 38 1 9.5374 -0.9472 -7.6606 39 1 5.6320 -3.6849 -0.7278 40 1 4.1091 -3.5392 -1.6388 41 1 5.0116 -1.7874 0.6940 42 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301598992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:08 Heat of formation + Delta-G solvation = -2.209629 kcal Electronic energy + Delta-G solvation = -26720.544548 eV Core-core repulsion = 22618.760833 eV Total energy + Delta-G solvation = -4101.783715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -49.40255 -42.31235 -40.03526 -38.53642 -36.71358 -36.28658 -33.61318 -31.63641 -31.46268 -30.60739 -30.26825 -27.52387 -25.75974 -24.43316 -23.30914 -22.98662 -22.31706 -21.27348 -19.81389 -19.62800 -18.93355 -18.04678 -17.69379 -17.12767 -16.94574 -16.77221 -16.25277 -15.50486 -15.17368 -14.99275 -14.71094 -14.29010 -14.23749 -13.92741 -13.55493 -13.42214 -13.18014 -12.97628 -12.72844 -12.34510 -12.20534 -11.96195 -11.72182 -11.61638 -11.36284 -11.31314 -11.11727 -10.95523 -10.79277 -10.64123 -10.29518 -10.06869 -9.83562 -9.73416 -9.54264 -8.73566 -8.28103 -7.10745 -6.05268 -3.41968 -0.36014 0.39539 1.10454 1.21387 2.62514 2.78409 3.21556 3.39287 3.41035 3.47622 3.88717 4.17229 4.27879 4.42280 4.53802 4.71533 4.73218 4.79474 4.81329 5.01052 5.21389 5.23777 5.26903 5.28485 5.35710 5.41352 5.55331 5.66264 5.76524 5.86476 5.99265 6.11629 6.13528 6.18737 6.25673 6.42385 6.47211 6.49755 6.52861 6.78122 6.92570 7.47956 7.84881 8.22291 8.82786 9.61076 9.97803 11.10586 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025725 B = 0.002455 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.185782 B =11401.402492 C =11971.905537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.125 3.875 11 C -0.130 4.130 12 C -0.092 4.092 13 C 0.117 3.883 14 N -0.712 5.712 15 C 0.248 3.752 16 C -0.180 4.180 17 C -0.006 4.006 18 C -0.093 4.093 19 N 0.042 4.958 20 O -0.175 6.175 21 O -0.171 6.171 22 C -0.040 4.040 23 C 0.018 3.982 24 F -0.127 7.127 25 C -0.125 4.125 26 C 0.148 3.852 27 H 0.263 0.737 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.412 0.588 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.022 0.978 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.850 -6.523 -10.485 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.391 4.391 8 H 0.104 0.896 9 N -0.329 5.329 10 C -0.001 4.001 11 C -0.169 4.169 12 C -0.111 4.111 13 C -0.006 4.006 14 N -0.336 5.336 15 C 0.135 3.865 16 C -0.204 4.204 17 C -0.026 4.026 18 C -0.180 4.180 19 N 0.558 4.442 20 O -0.387 6.387 21 O -0.384 6.384 22 C -0.060 4.060 23 C -0.006 4.006 24 F -0.105 7.105 25 C -0.165 4.165 26 C 0.022 3.978 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.250 0.750 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.180 0.820 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.184 -6.300 -9.701 20.715 hybrid contribution 0.584 1.625 -0.200 1.738 sum 17.768 -4.675 -9.901 20.871 Atomic orbital electron populations 1.69834 1.05730 1.26646 1.52697 1.25295 0.95235 0.97604 0.99420 0.86958 0.80006 0.84726 0.76953 1.21698 1.23058 1.19655 1.18914 0.84949 0.94784 1.40441 0.89641 1.44348 1.08661 1.33370 1.46529 1.21320 0.97321 0.92062 0.89360 1.22106 0.97676 0.98212 0.98920 1.21315 0.97517 0.97562 0.94687 1.21865 0.95079 0.91378 0.92326 1.45248 1.51723 1.12020 1.24578 1.18261 0.88691 0.92964 0.86584 1.20552 1.06403 0.93487 0.99923 1.20825 0.90246 1.00506 0.91015 1.20373 1.09638 0.94642 0.93324 1.43397 0.98932 1.00564 1.01318 1.94535 1.43058 1.50909 1.50239 1.94528 1.67346 1.01010 1.75518 1.20582 0.95955 0.94654 0.94852 1.16619 1.07014 0.78756 0.98245 1.91539 1.95486 1.31500 1.92004 1.21986 0.99413 0.96979 0.98127 1.20907 0.92457 0.91455 0.92953 0.92678 0.90843 0.95848 0.91328 0.93139 0.90925 0.91157 0.90859 0.75039 0.82628 0.82458 0.82022 0.92339 0.91441 0.96020 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.05 13.97 55.49 0.78 -26.28 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 3 Si 0.88 21.63 24.34 -169.99 -4.14 17.49 16 4 H -0.29 -6.82 6.62 56.52 0.37 -6.45 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.27 -6.51 6.64 56.52 0.38 -6.13 16 7 C -0.26 -7.00 10.03 -15.06 -0.15 -7.15 16 8 H 0.09 2.44 8.06 -52.49 -0.42 2.01 16 9 N -0.61 -13.28 2.77 -172.32 -0.48 -13.75 16 10 C 0.13 2.48 4.20 -3.71 -0.02 2.47 16 11 C -0.13 -1.92 5.25 -26.59 -0.14 -2.06 16 12 C -0.09 -1.07 2.18 -90.56 -0.20 -1.27 16 13 C 0.12 0.99 4.31 -4.04 -0.02 0.97 16 14 N -0.71 -6.08 5.45 -58.56 -0.32 -6.40 16 15 C 0.25 2.08 6.66 -83.68 -0.56 1.52 16 16 C -0.18 -1.26 9.31 -39.39 -0.37 -1.63 16 17 C -0.01 -0.04 9.55 -39.60 -0.38 -0.42 16 18 C -0.09 -0.89 6.85 -79.92 -0.55 -1.44 16 19 N 0.04 0.50 4.45 33.98 0.15 0.65 16 20 O -0.17 -2.22 18.44 -29.46 -0.54 -2.77 16 21 O -0.17 -2.10 18.44 -29.46 -0.54 -2.65 16 22 C -0.04 -0.35 9.53 -39.55 -0.38 -0.73 16 23 C 0.02 0.17 7.31 -39.25 -0.29 -0.12 16 24 F -0.13 -1.26 16.64 2.25 0.04 -1.23 16 25 C -0.13 -1.61 5.37 -26.61 -0.14 -1.76 16 26 C 0.15 2.57 6.52 -3.71 -0.02 2.55 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.07 1.65 4.49 -51.93 -0.23 1.42 16 29 H 0.02 0.46 7.07 -51.93 -0.37 0.10 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.65 7.15 -51.93 -0.37 0.28 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.49 7.94 -51.93 -0.41 0.08 16 34 H 0.07 0.61 7.96 -51.93 -0.41 0.20 16 35 H 0.41 3.64 7.13 -40.82 -0.29 3.35 16 36 H 0.16 0.79 6.74 -52.48 -0.35 0.44 16 37 H 0.16 0.93 7.60 -52.49 -0.40 0.53 16 38 H 0.16 1.29 7.60 -52.49 -0.40 0.89 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -30.58 345.87 -8.52 -39.10 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.38 Total: -0.89 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -3.29 Total: -8.49 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.13 Total: -45.78 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -1.09 Total: -5.41 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.58 -8.52 -39.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301598992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.885 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds