Wall clock time and date at job start Tue Mar 31 2020 14:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 C 1.53009 * 109.45003 * 181.24476 * 12 11 10 14 14 N 1.46502 * 109.47028 * 64.78861 * 13 12 11 15 15 C 1.39842 * 119.99815 * 180.02562 * 14 13 12 16 16 C 1.38829 * 120.07924 * 359.72144 * 15 14 13 17 17 C 1.38158 * 119.95168 * 179.74861 * 16 15 14 18 18 C 1.38271 * 120.10641 * 0.50591 * 17 16 15 19 19 N 1.48009 * 119.91749 * 179.74834 * 18 17 16 20 20 O 1.21798 * 119.99931 * 180.02562 * 19 18 17 21 21 O 1.21801 * 120.00217 * 0.02562 * 19 18 17 22 22 C 1.38286 * 120.16571 * 359.76982 * 18 17 16 23 23 C 1.38287 * 120.04647 * 359.97438 * 22 18 17 24 24 F 1.35100 * 120.05514 * 179.97438 * 23 22 18 25 25 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 26 26 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 27 27 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 29 29 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 30 30 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 31 31 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 32 32 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 33 33 H 1.08997 * 109.46629 * 184.78935 * 13 12 11 34 34 H 1.09001 * 109.46604 * 304.78868 * 13 12 11 35 35 H 0.96993 * 120.00363 * 359.97438 * 14 13 12 36 36 H 1.08005 * 120.02472 * 359.97438 * 16 15 14 37 37 H 1.08002 * 119.94736 * 180.25749 * 17 16 15 38 38 H 1.07995 * 119.98020 * 179.97438 * 22 18 17 39 39 H 1.09002 * 109.49848 * 178.74812 * 25 12 11 40 40 H 1.08999 * 109.49849 * 58.64620 * 25 12 11 41 41 H 1.09004 * 109.59094 * 246.19900 * 26 9 7 42 42 H 1.09001 * 109.59077 * 6.49172 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 6 6.1998 -2.6893 -3.1896 14 7 6.9262 -1.7199 -4.0136 15 6 7.6231 -2.1492 -5.1475 16 6 7.6324 -3.4945 -5.4905 17 6 8.3175 -3.9150 -6.6142 18 6 9.0025 -2.9997 -7.3919 19 7 9.7396 -3.4557 -8.5917 20 8 10.3439 -2.6508 -9.2775 21 8 9.7419 -4.6358 -8.8931 22 6 9.0010 -1.6595 -7.0513 23 6 8.3132 -1.2305 -5.9309 24 9 8.3121 0.0787 -5.5977 25 6 4.8755 -2.9898 -1.0921 26 6 4.2351 -2.2628 0.0946 27 1 -0.4850 0.8401 0.0004 28 1 2.9908 0.3501 -1.7559 29 1 4.5579 0.3822 -0.9097 30 1 3.7035 -1.5726 -3.0945 31 1 4.9277 -0.2876 -3.2372 32 1 6.2781 -1.3980 -1.4672 33 1 6.8970 -3.4329 -2.8037 34 1 5.4397 -3.1833 -3.7948 35 1 6.9232 -0.7802 -3.7732 36 1 7.1015 -4.2112 -4.8814 37 1 8.3212 -4.9610 -6.8833 38 1 9.5374 -0.9472 -7.6606 39 1 5.6320 -3.6849 -0.7278 40 1 4.1091 -3.5392 -1.6388 41 1 5.0116 -1.7874 0.6940 42 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301598992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:07 Heat of formation + Delta-G solvation = -20.237843 kcal Electronic energy + Delta-G solvation = -26721.326310 eV Core-core repulsion = 22618.760833 eV Total energy + Delta-G solvation = -4102.565477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.10191 -43.13941 -40.72917 -39.68005 -37.58949 -37.26099 -35.03800 -33.25880 -32.08723 -31.92173 -31.24683 -28.63544 -26.76118 -25.58511 -24.44234 -24.14040 -23.19737 -22.37554 -20.93509 -20.48247 -19.77348 -18.94486 -18.59680 -18.52563 -17.80587 -17.44937 -17.21454 -16.95026 -16.06682 -15.87208 -15.78059 -15.46867 -15.30754 -14.93141 -14.78293 -14.44856 -14.26209 -14.13775 -13.85139 -13.61590 -13.41370 -13.03081 -12.89095 -12.60060 -12.59189 -12.29346 -12.24174 -12.21547 -12.11765 -11.76806 -11.70160 -11.56793 -11.29149 -11.16927 -10.68777 -10.33942 -8.94076 -8.91657 -8.19177 -5.49876 -1.15036 -0.20000 0.33728 0.46045 1.25374 1.37587 1.45833 1.96535 2.16291 2.38168 2.83614 3.04219 3.28613 3.35244 3.57335 3.63790 3.74349 3.81874 3.95356 4.11316 4.18532 4.36738 4.39295 4.50514 4.58377 4.65947 4.68319 4.70740 4.76514 4.78507 4.82860 5.00088 5.07637 5.13091 5.15552 5.22728 5.26743 5.37398 5.56829 5.81658 5.86542 6.11064 6.26297 6.56623 6.91782 7.62360 8.01711 9.00847 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025725 B = 0.002455 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.185782 B =11401.402492 C =11971.905537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.039 4.039 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.315 1.315 6 H -0.261 1.261 7 C -0.245 4.245 8 H 0.053 0.947 9 N -0.621 5.621 10 C 0.117 3.883 11 C -0.121 4.121 12 C -0.084 4.084 13 C 0.124 3.876 14 N -0.711 5.711 15 C 0.251 3.749 16 C -0.168 4.168 17 C 0.002 3.998 18 C -0.106 4.106 19 N 0.045 4.955 20 O -0.209 6.209 21 O -0.179 6.179 22 C -0.041 4.041 23 C 0.008 3.992 24 F -0.135 7.135 25 C -0.114 4.114 26 C 0.138 3.862 27 H 0.260 0.740 28 H 0.042 0.958 29 H 0.030 0.970 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.185 0.815 37 H 0.176 0.824 38 H 0.163 0.837 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.033 0.967 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.236 -7.594 -10.631 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.233 4.233 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.244 1.244 6 H -0.185 1.185 7 C -0.375 4.375 8 H 0.070 0.930 9 N -0.346 5.346 10 C -0.008 4.008 11 C -0.160 4.160 12 C -0.103 4.103 13 C 0.002 3.998 14 N -0.334 5.334 15 C 0.138 3.862 16 C -0.192 4.192 17 C -0.018 4.018 18 C -0.194 4.194 19 N 0.554 4.446 20 O -0.415 6.415 21 O -0.393 6.393 22 C -0.062 4.062 23 C -0.016 4.016 24 F -0.113 7.113 25 C -0.154 4.154 26 C 0.013 3.987 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.202 0.798 37 H 0.194 0.806 38 H 0.181 0.819 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.659 -7.366 -9.892 23.208 hybrid contribution -0.203 1.860 -0.051 1.872 sum 19.457 -5.506 -9.943 22.533 Atomic orbital electron populations 1.69970 1.07435 1.27112 1.55973 1.25925 0.95823 1.00958 1.00629 0.85912 0.78714 0.80386 0.77321 1.20383 1.24390 1.18510 1.18890 0.87013 0.93386 1.38204 0.92969 1.44515 1.07726 1.34835 1.47563 1.21381 0.96574 0.92121 0.90737 1.21971 0.98232 0.98845 0.96953 1.21205 0.96571 0.96776 0.95764 1.21795 0.95751 0.91154 0.91134 1.45250 1.51532 1.12103 1.24546 1.18357 0.88234 0.93352 0.86260 1.20831 1.05604 0.93216 0.99524 1.21094 0.89129 1.01049 0.90524 1.20521 1.10561 0.95344 0.92936 1.43707 0.98776 1.00302 1.01789 1.94528 1.44530 1.50951 1.51482 1.94499 1.67470 1.01339 1.75956 1.20621 0.95935 0.94671 0.94961 1.16695 1.07696 0.78645 0.98606 1.91519 1.95607 1.32140 1.92070 1.21846 1.00001 0.97240 0.96276 1.21167 0.91873 0.90491 0.95132 0.93074 0.93995 0.95195 0.92612 0.90923 0.90092 0.88166 0.90093 0.75162 0.79824 0.80648 0.81924 0.88372 0.92242 0.94891 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.42 13.97 21.65 0.30 -59.12 16 2 C -0.04 -2.22 5.23 84.86 0.44 -1.78 16 3 Si 0.95 45.52 24.34 68.60 1.67 47.19 16 4 H -0.28 -12.58 6.62 99.48 0.66 -11.92 16 5 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 6 H -0.26 -11.86 6.64 99.48 0.66 -11.20 16 7 C -0.25 -13.34 10.03 84.03 0.84 -12.50 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 9 N -0.62 -26.74 2.77 -699.09 -1.94 -28.68 16 10 C 0.12 4.43 4.20 86.36 0.36 4.80 16 11 C -0.12 -3.20 5.25 30.68 0.16 -3.04 16 12 C -0.08 -1.57 2.18 -10.75 -0.02 -1.59 16 13 C 0.12 1.39 4.31 86.38 0.37 1.77 16 14 N -0.71 -8.81 5.45 -339.18 -1.85 -10.66 16 15 C 0.25 3.21 6.66 38.21 0.25 3.47 16 16 C -0.17 -1.56 9.31 22.39 0.21 -1.35 16 17 C 0.00 0.03 9.55 22.26 0.21 0.24 16 18 C -0.11 -1.83 6.85 36.40 0.25 -1.58 16 19 N 0.04 1.02 4.45 -46.42 -0.21 0.81 16 20 O -0.21 -5.37 18.44 18.89 0.35 -5.02 16 21 O -0.18 -4.23 18.44 18.89 0.35 -3.89 16 22 C -0.04 -0.67 9.53 22.29 0.21 -0.46 16 23 C 0.01 0.13 7.31 22.48 0.16 0.29 16 24 F -0.13 -2.43 16.64 44.97 0.75 -1.68 16 25 C -0.11 -2.47 5.37 30.67 0.16 -2.31 16 26 C 0.14 4.49 6.52 86.37 0.56 5.05 16 27 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.04 1.85 4.49 -2.39 -0.01 1.84 16 29 H 0.03 1.10 7.07 -2.38 -0.02 1.09 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.61 7.15 -2.39 -0.02 1.59 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 0.66 7.94 -2.39 -0.02 0.64 16 34 H 0.08 0.87 7.96 -2.39 -0.02 0.85 16 35 H 0.41 5.53 7.13 -92.71 -0.66 4.86 16 36 H 0.18 0.70 6.74 -2.91 -0.02 0.68 16 37 H 0.18 1.40 7.60 -2.91 -0.02 1.38 16 38 H 0.16 2.52 7.60 -2.91 -0.02 2.50 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 Total: -1.00 -70.14 345.87 3.92 -66.22 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 0.31 Total: 3.84 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 4.19 Total: -9.00 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -3.69 Total: -97.66 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.70 Total: -8.91 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.75 Total: -1.68 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.67 Total: 47.19 kcal Total: -70.14 3.92 -66.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301598992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.982 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds