Wall clock time and date at job start Tue Mar 31 2020 14:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86796 * 120.00225 * 2 1 4 4 H 1.48507 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47203 * 299.99997 * 3 2 1 6 6 H 1.48499 * 109.47176 * 59.99915 * 3 2 1 7 7 C 1.38822 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99617 * 163.53238 * 7 2 1 9 9 N 1.36932 * 120.00031 * 343.53081 * 7 2 1 10 10 C 1.46919 * 120.63374 * 331.67749 * 9 7 2 11 11 C 1.53192 * 108.89478 * 233.51563 * 10 9 7 12 12 C 1.53072 * 109.29256 * 305.57416 * 11 10 9 13 13 C 1.53002 * 109.45234 * 181.24333 * 12 11 10 14 14 N 1.46498 * 109.47099 * 64.79055 * 13 12 11 15 15 C 1.39824 * 120.00157 * 180.02562 * 14 13 12 16 16 C 1.38901 * 120.04700 * 5.62799 * 15 14 13 17 17 C 1.38101 * 119.95146 * 180.02562 * 16 15 14 18 18 C 1.38478 * 120.04788 * 0.02562 * 17 16 15 19 19 F 1.35102 * 119.95083 * 179.97438 * 18 17 16 20 20 C 1.38449 * 120.10084 * 0.02562 * 18 17 16 21 21 C 1.38143 * 120.04579 * 359.67921 * 20 18 17 22 22 N 1.48010 * 120.02290 * 180.29491 * 21 20 18 23 23 O 1.21794 * 119.99875 * 36.94704 * 22 21 20 24 24 O 1.21801 * 119.99536 * 216.94489 * 22 21 20 25 25 C 1.53039 * 109.65793 * 61.15361 * 12 11 10 26 26 C 1.46928 * 120.62992 * 151.65322 * 9 7 2 27 27 H 0.96995 * 120.00134 * 0.02562 * 1 2 3 28 28 H 1.09009 * 109.58492 * 353.37079 * 10 9 7 29 29 H 1.09007 * 109.59227 * 113.65303 * 10 9 7 30 30 H 1.08998 * 109.50033 * 65.38681 * 11 10 9 31 31 H 1.09000 * 109.49797 * 185.48234 * 11 10 9 32 32 H 1.08998 * 109.33790 * 301.13609 * 12 11 10 33 33 H 1.09002 * 109.46857 * 184.79193 * 13 12 11 34 34 H 1.08997 * 109.46976 * 304.79196 * 13 12 11 35 35 H 0.96998 * 119.99920 * 0.02562 * 14 13 12 36 36 H 1.08007 * 120.02563 * 0.02562 * 16 15 14 37 37 H 1.08000 * 119.97629 * 180.02562 * 17 16 15 38 38 H 1.07994 * 119.97583 * 179.97438 * 20 18 17 39 39 H 1.09005 * 109.50223 * 178.74543 * 25 12 11 40 40 H 1.09003 * 109.49687 * 58.64897 * 25 12 11 41 41 H 1.09007 * 109.58437 * 246.20742 * 26 9 7 42 42 H 1.09000 * 109.58505 * 6.48115 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0569 -1.2215 -0.2646 9 7 1.3676 -2.3636 0.3372 10 6 0.2196 -2.3454 1.2539 11 6 0.4816 -3.3313 2.3967 12 6 0.8012 -4.7096 1.8124 13 6 1.0330 -5.7046 2.9512 14 7 -0.2090 -5.8782 3.7085 15 6 -0.2440 -6.7452 4.8049 16 6 0.9237 -7.3523 5.2490 17 6 0.8868 -8.2087 6.3318 18 6 -0.3133 -8.4627 6.9744 19 9 -0.3473 -9.3012 8.0332 20 6 -1.4786 -7.8595 6.5328 21 6 -1.4453 -6.9974 5.4539 22 7 -2.6903 -6.3477 4.9863 23 8 -3.5291 -5.9875 5.7926 24 8 -2.8759 -6.1733 3.7952 25 6 2.0604 -4.6225 0.9471 26 6 1.8128 -3.6517 -0.2118 27 1 -0.4850 0.8400 -0.0004 28 1 0.0918 -1.3416 1.6594 29 1 -0.6819 -2.6399 0.7166 30 1 1.3279 -2.9846 2.9897 31 1 -0.4034 -3.3983 3.0295 32 1 -0.0366 -5.0457 1.2015 33 1 1.3436 -6.6641 2.5377 34 1 1.8117 -5.3248 3.6126 35 1 -1.0071 -5.3917 3.4493 36 1 1.8599 -7.1549 4.7479 37 1 1.7945 -8.6807 6.6777 38 1 -2.4135 -8.0593 7.0352 39 1 2.2983 -5.6095 0.5503 40 1 2.8930 -4.2625 1.5515 41 1 1.0417 -4.0552 -0.8681 42 1 2.7347 -3.5096 -0.7756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301618434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:37 Heat of formation + Delta-G solvation = -3.593659 kcal Electronic energy + Delta-G solvation = -27182.695602 eV Core-core repulsion = 23080.851871 eV Total energy + Delta-G solvation = -4101.843731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -49.26633 -42.35943 -39.91658 -38.18526 -36.74140 -35.75695 -33.35872 -32.40484 -31.11346 -29.95492 -29.31726 -26.98558 -26.36567 -24.41346 -22.98862 -22.64473 -22.09676 -21.06689 -19.67110 -19.24470 -18.86574 -18.18213 -17.48182 -16.89262 -16.76368 -16.63309 -16.01871 -15.29478 -14.97678 -14.88755 -14.75914 -13.96567 -13.67862 -13.57240 -13.53673 -13.48720 -13.10577 -12.64218 -12.40357 -12.20072 -12.07992 -11.70181 -11.48311 -11.24197 -11.18711 -11.05315 -10.77832 -10.70791 -10.44798 -10.33308 -10.25240 -10.07815 -9.96249 -9.65271 -9.52244 -8.51583 -8.06579 -6.71719 -5.82638 -3.26172 -0.24632 0.63013 0.91986 1.21983 2.80955 2.82075 3.34103 3.42152 3.43974 3.72069 3.90310 4.21261 4.44806 4.45898 4.53773 4.80967 4.90262 4.97767 5.19375 5.24020 5.30581 5.33804 5.45067 5.48421 5.53531 5.68069 5.83252 5.96138 6.01792 6.17067 6.21223 6.33551 6.46630 6.53252 6.63208 6.65339 6.71551 6.89690 7.12126 7.30360 7.49398 7.61311 7.75768 8.41152 9.17214 9.80456 10.37040 11.25789 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002758 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.651698 B =10148.963257 C =10752.376601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.135 4.135 12 C -0.091 4.091 13 C 0.117 3.883 14 N -0.711 5.711 15 C 0.278 3.722 16 C -0.169 4.169 17 C -0.053 4.053 18 C 0.036 3.964 19 F -0.132 7.132 20 C -0.048 4.048 21 C -0.105 4.105 22 N 0.038 4.962 23 O -0.151 6.151 24 O -0.169 6.169 25 C -0.123 4.123 26 C 0.145 3.855 27 H 0.254 0.746 28 H 0.088 0.912 29 H 0.019 0.981 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -18.329 12.423 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.175 4.175 12 C -0.110 4.110 13 C -0.006 4.006 14 N -0.338 5.338 15 C 0.164 3.836 16 C -0.192 4.192 17 C -0.073 4.073 18 C 0.014 3.986 19 F -0.111 7.111 20 C -0.068 4.068 21 C -0.195 4.195 22 N 0.556 4.444 23 O -0.370 6.370 24 O -0.379 6.379 25 C -0.163 4.163 26 C 0.019 3.981 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.257 0.743 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.624 -18.430 12.442 22.391 hybrid contribution -0.347 1.057 0.056 1.114 sum 2.277 -17.373 12.498 21.522 Atomic orbital electron populations 1.70026 1.05269 1.25486 1.53763 1.25074 0.95300 0.98473 1.00794 0.86237 0.79329 0.83961 0.77325 1.20261 1.21663 1.21557 1.19211 0.92399 0.84724 1.42077 0.91659 1.44048 1.35524 1.01655 1.50253 1.20753 0.88694 0.98068 0.87990 1.22261 0.99845 0.95324 1.00041 1.21316 0.99852 0.95004 0.94864 1.21877 0.85025 0.99981 0.93766 1.45666 1.16003 1.43879 1.28246 1.17593 0.91098 0.88484 0.86436 1.20623 0.97020 1.01624 0.99966 1.21295 0.97430 0.95184 0.93371 1.16894 0.93463 0.97810 0.90462 1.91534 1.97097 1.68916 1.53572 1.20498 0.99861 0.93395 0.93040 1.20038 0.83734 1.10418 1.05269 1.43361 1.01751 0.98685 1.00650 1.94550 1.39271 1.51820 1.51322 1.94529 1.83480 1.60273 0.99630 1.21981 0.96156 0.99369 0.98752 1.20879 0.97782 0.86931 0.92545 0.93602 0.89427 0.96285 0.92537 0.93786 0.90750 0.91358 0.91311 0.74309 0.82664 0.83001 0.82649 0.92853 0.92053 0.96422 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 11.18 55.49 0.62 -25.33 16 2 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 3 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.30 2.99 -172.31 -0.52 -14.82 16 10 C 0.17 3.95 5.29 -3.71 -0.02 3.93 16 11 C -0.14 -2.40 5.25 -26.59 -0.14 -2.53 16 12 C -0.09 -1.32 2.18 -90.56 -0.20 -1.52 16 13 C 0.12 1.27 4.35 -4.04 -0.02 1.25 16 14 N -0.71 -8.35 5.23 -58.61 -0.31 -8.66 16 15 C 0.28 2.96 6.61 -83.74 -0.55 2.41 16 16 C -0.17 -1.32 9.32 -39.39 -0.37 -1.69 16 17 C -0.05 -0.36 10.02 -39.54 -0.40 -0.76 16 18 C 0.04 0.31 7.30 -39.41 -0.29 0.02 16 19 F -0.13 -1.19 17.26 2.25 0.04 -1.15 16 20 C -0.05 -0.46 9.63 -39.54 -0.38 -0.84 16 21 C -0.10 -1.21 6.52 -79.76 -0.52 -1.73 16 22 N 0.04 0.53 4.30 34.05 0.15 0.67 16 23 O -0.15 -2.20 18.93 -29.46 -0.56 -2.76 16 24 O -0.17 -2.57 16.69 -29.46 -0.49 -3.07 16 25 C -0.12 -1.84 5.36 -26.61 -0.14 -1.99 16 26 C 0.15 2.85 6.52 -3.71 -0.02 2.83 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.09 2.31 6.06 -51.92 -0.31 1.99 16 29 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.73 7.15 -51.93 -0.37 0.36 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 34 H 0.07 0.70 7.73 -51.93 -0.40 0.30 16 35 H 0.42 5.60 5.19 -40.82 -0.21 5.39 16 36 H 0.16 0.92 6.73 -52.48 -0.35 0.57 16 37 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.16 1.30 8.00 -52.49 -0.42 0.88 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -29.99 350.41 -9.51 -39.50 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.41 Total: 1.57 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -3.28 Total: -7.63 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.06 Total: -48.13 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -1.05 Total: -5.83 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.99 -9.51 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301618434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.902 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds