Wall clock time and date at job start Tue Mar 31 2020 14:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86796 * 120.00225 * 2 1 4 4 H 1.48507 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47203 * 299.99997 * 3 2 1 6 6 H 1.48499 * 109.47176 * 59.99915 * 3 2 1 7 7 C 1.38822 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99617 * 163.53238 * 7 2 1 9 9 N 1.36932 * 120.00031 * 343.53081 * 7 2 1 10 10 C 1.46919 * 120.63374 * 331.67749 * 9 7 2 11 11 C 1.53192 * 108.89478 * 233.51563 * 10 9 7 12 12 C 1.53072 * 109.29256 * 305.57416 * 11 10 9 13 13 C 1.53002 * 109.45234 * 181.24333 * 12 11 10 14 14 N 1.46498 * 109.47099 * 64.79055 * 13 12 11 15 15 C 1.39824 * 120.00157 * 180.02562 * 14 13 12 16 16 C 1.38901 * 120.04700 * 5.62799 * 15 14 13 17 17 C 1.38101 * 119.95146 * 180.02562 * 16 15 14 18 18 C 1.38478 * 120.04788 * 0.02562 * 17 16 15 19 19 F 1.35102 * 119.95083 * 179.97438 * 18 17 16 20 20 C 1.38449 * 120.10084 * 0.02562 * 18 17 16 21 21 C 1.38143 * 120.04579 * 359.67921 * 20 18 17 22 22 N 1.48010 * 120.02290 * 180.29491 * 21 20 18 23 23 O 1.21794 * 119.99875 * 36.94704 * 22 21 20 24 24 O 1.21801 * 119.99536 * 216.94489 * 22 21 20 25 25 C 1.53039 * 109.65793 * 61.15361 * 12 11 10 26 26 C 1.46928 * 120.62992 * 151.65322 * 9 7 2 27 27 H 0.96995 * 120.00134 * 0.02562 * 1 2 3 28 28 H 1.09009 * 109.58492 * 353.37079 * 10 9 7 29 29 H 1.09007 * 109.59227 * 113.65303 * 10 9 7 30 30 H 1.08998 * 109.50033 * 65.38681 * 11 10 9 31 31 H 1.09000 * 109.49797 * 185.48234 * 11 10 9 32 32 H 1.08998 * 109.33790 * 301.13609 * 12 11 10 33 33 H 1.09002 * 109.46857 * 184.79193 * 13 12 11 34 34 H 1.08997 * 109.46976 * 304.79196 * 13 12 11 35 35 H 0.96998 * 119.99920 * 0.02562 * 14 13 12 36 36 H 1.08007 * 120.02563 * 0.02562 * 16 15 14 37 37 H 1.08000 * 119.97629 * 180.02562 * 17 16 15 38 38 H 1.07994 * 119.97583 * 179.97438 * 20 18 17 39 39 H 1.09005 * 109.50223 * 178.74543 * 25 12 11 40 40 H 1.09003 * 109.49687 * 58.64897 * 25 12 11 41 41 H 1.09007 * 109.58437 * 246.20742 * 26 9 7 42 42 H 1.09000 * 109.58505 * 6.48115 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0569 -1.2215 -0.2646 9 7 1.3676 -2.3636 0.3372 10 6 0.2196 -2.3454 1.2539 11 6 0.4816 -3.3313 2.3967 12 6 0.8012 -4.7096 1.8124 13 6 1.0330 -5.7046 2.9512 14 7 -0.2090 -5.8782 3.7085 15 6 -0.2440 -6.7452 4.8049 16 6 0.9237 -7.3523 5.2490 17 6 0.8868 -8.2087 6.3318 18 6 -0.3133 -8.4627 6.9744 19 9 -0.3473 -9.3012 8.0332 20 6 -1.4786 -7.8595 6.5328 21 6 -1.4453 -6.9974 5.4539 22 7 -2.6903 -6.3477 4.9863 23 8 -3.5291 -5.9875 5.7926 24 8 -2.8759 -6.1733 3.7952 25 6 2.0604 -4.6225 0.9471 26 6 1.8128 -3.6517 -0.2118 27 1 -0.4850 0.8400 -0.0004 28 1 0.0918 -1.3416 1.6594 29 1 -0.6819 -2.6399 0.7166 30 1 1.3279 -2.9846 2.9897 31 1 -0.4034 -3.3983 3.0295 32 1 -0.0366 -5.0457 1.2015 33 1 1.3436 -6.6641 2.5377 34 1 1.8117 -5.3248 3.6126 35 1 -1.0071 -5.3917 3.4493 36 1 1.8599 -7.1549 4.7479 37 1 1.7945 -8.6807 6.6777 38 1 -2.4135 -8.0593 7.0352 39 1 2.2983 -5.6095 0.5503 40 1 2.8930 -4.2625 1.5515 41 1 1.0417 -4.0552 -0.8681 42 1 2.7347 -3.5096 -0.7756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301618434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:36 Heat of formation + Delta-G solvation = -19.752804 kcal Electronic energy + Delta-G solvation = -27183.396315 eV Core-core repulsion = 23080.851871 eV Total energy + Delta-G solvation = -4102.544444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.94283 -43.33804 -40.72011 -39.49955 -37.80350 -36.91160 -34.89535 -33.16933 -32.68905 -31.54609 -30.34318 -28.22446 -27.35517 -25.89024 -24.03140 -23.91756 -23.23789 -22.31288 -20.84307 -20.41279 -19.88181 -19.11220 -18.71940 -18.21515 -17.58067 -17.43654 -16.85229 -16.69782 -16.13529 -15.95308 -15.63841 -15.38791 -15.31079 -14.89675 -14.42785 -14.36379 -14.23679 -13.88260 -13.79575 -13.37674 -13.09592 -12.97970 -12.85389 -12.79111 -12.59588 -12.35586 -12.28677 -12.16258 -11.97751 -11.87868 -11.61382 -11.32518 -11.18615 -11.04026 -10.73149 -10.56405 -8.83227 -8.69030 -7.88575 -5.34811 -1.14868 -0.05548 0.05377 0.33274 1.44348 1.46251 1.56672 1.98614 2.15284 2.49821 3.03884 3.20301 3.26133 3.62197 3.67844 3.73226 3.79794 3.86857 3.91513 4.03892 4.24156 4.49888 4.52203 4.59132 4.64532 4.65806 4.73206 4.75129 4.89144 4.91039 5.01574 5.10842 5.14979 5.23828 5.29544 5.38657 5.40652 5.52675 5.63915 5.73933 5.85021 6.15712 6.38156 6.38939 7.13684 7.86183 8.37251 9.17605 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002758 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.651698 B =10148.963257 C =10752.376601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.055 4.055 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.259 4.259 8 H 0.070 0.930 9 N -0.611 5.611 10 C 0.177 3.823 11 C -0.120 4.120 12 C -0.085 4.085 13 C 0.126 3.874 14 N -0.722 5.722 15 C 0.269 3.731 16 C -0.159 4.159 17 C -0.032 4.032 18 C 0.039 3.961 19 F -0.134 7.134 20 C -0.058 4.058 21 C -0.123 4.123 22 N 0.042 4.958 23 O -0.174 6.174 24 O -0.201 6.201 25 C -0.109 4.109 26 C 0.136 3.864 27 H 0.248 0.752 28 H 0.047 0.953 29 H -0.012 1.012 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.404 0.596 36 H 0.186 0.814 37 H 0.191 0.809 38 H 0.158 0.842 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.009 0.991 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.293 -20.828 13.774 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.250 4.250 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.390 4.390 8 H 0.088 0.912 9 N -0.335 5.335 10 C 0.051 3.949 11 C -0.159 4.159 12 C -0.104 4.104 13 C 0.004 3.996 14 N -0.349 5.349 15 C 0.156 3.844 16 C -0.181 4.181 17 C -0.052 4.052 18 C 0.017 3.983 19 F -0.113 7.113 20 C -0.078 4.078 21 C -0.213 4.213 22 N 0.553 4.447 23 O -0.390 6.390 24 O -0.406 6.406 25 C -0.148 4.148 26 C 0.011 3.989 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.007 0.993 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.243 0.757 36 H 0.203 0.797 37 H 0.208 0.792 38 H 0.176 0.824 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.027 0.973 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.969 -20.965 13.785 25.792 hybrid contribution -1.336 1.739 -0.348 2.220 sum 4.633 -19.227 13.438 23.910 Atomic orbital electron populations 1.70198 1.06819 1.25685 1.55710 1.25854 0.96017 1.01702 1.01473 0.85220 0.78809 0.79881 0.76638 1.18665 1.22083 1.21935 1.19582 0.92759 0.85944 1.40697 0.91231 1.44333 1.35417 1.02711 1.50995 1.20519 0.87688 0.97441 0.89275 1.22006 1.00038 0.96080 0.97764 1.21185 0.99340 0.93753 0.96120 1.21811 0.84961 1.00211 0.92601 1.45708 1.15811 1.44340 1.28997 1.17894 0.91647 0.88707 0.86169 1.20993 0.96768 1.00516 0.99835 1.21706 0.97919 0.93664 0.91892 1.17046 0.93690 0.97291 0.90271 1.91540 1.97112 1.68925 1.53693 1.20590 1.00863 0.93526 0.92812 1.20206 0.82693 1.11704 1.06730 1.43753 1.02462 0.98295 1.00235 1.94520 1.40663 1.52640 1.51187 1.94509 1.84183 1.61564 1.00332 1.21819 0.96258 0.99873 0.96832 1.21120 0.97255 0.86015 0.94554 0.94273 0.93458 0.99343 0.92519 0.93342 0.91924 0.88174 0.89494 0.75701 0.79692 0.79157 0.82436 0.88747 0.91451 0.97326 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.45 11.18 21.65 0.24 -56.21 16 2 C -0.06 -3.11 4.93 84.87 0.42 -2.69 16 3 Si 0.97 44.89 29.58 68.60 2.03 46.92 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.26 -14.10 9.58 84.04 0.81 -13.30 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 9 N -0.61 -29.98 2.99 -699.08 -2.09 -32.07 16 10 C 0.18 8.52 5.29 86.36 0.46 8.97 16 11 C -0.12 -4.21 5.25 30.68 0.16 -4.05 16 12 C -0.08 -2.27 2.18 -10.76 -0.02 -2.30 16 13 C 0.13 2.23 4.35 86.38 0.38 2.61 16 14 N -0.72 -15.38 5.23 -339.35 -1.78 -17.15 16 15 C 0.27 5.01 6.61 38.17 0.25 5.26 16 16 C -0.16 -1.69 9.32 22.40 0.21 -1.48 16 17 C -0.03 -0.28 10.02 22.29 0.22 -0.05 16 18 C 0.04 0.54 7.30 22.38 0.16 0.70 16 19 F -0.13 -2.00 17.26 44.97 0.78 -1.22 16 20 C -0.06 -1.03 9.63 22.30 0.21 -0.81 16 21 C -0.12 -2.73 6.52 36.50 0.24 -2.50 16 22 N 0.04 1.20 4.30 -46.17 -0.20 1.00 16 23 O -0.17 -5.34 18.93 18.89 0.36 -4.98 16 24 O -0.20 -6.40 16.69 18.88 0.32 -6.09 16 25 C -0.11 -2.90 5.36 30.67 0.16 -2.74 16 26 C 0.14 5.21 6.52 86.36 0.56 5.77 16 27 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.05 2.64 6.06 -2.38 -0.01 2.62 16 29 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.64 7.15 -2.39 -0.02 1.63 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 1.22 8.13 -2.39 -0.02 1.20 16 34 H 0.09 1.28 7.73 -2.39 -0.02 1.26 16 35 H 0.40 10.74 5.19 -92.71 -0.48 10.26 16 36 H 0.19 0.92 6.73 -2.91 -0.02 0.90 16 37 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 38 H 0.16 2.61 8.00 -2.91 -0.02 2.58 16 39 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 42 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 Total: -1.00 -70.28 350.41 4.45 -65.83 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.57 Total: 10.58 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 4.22 Total: -6.59 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -3.83 Total: -104.44 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.67 Total: -11.07 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.78 Total: -1.22 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.28 4.45 -65.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301618434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.075 kcal (2) G-P(sol) polarization free energy of solvation -70.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds