Wall clock time and date at job start Tue Mar 31 2020 15:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34693 * 125.66500 * 2 1 4 4 C 1.40978 * 107.02758 * 180.02562 * 3 2 1 5 5 C 1.35917 * 106.74023 * 359.97438 * 4 3 2 6 6 C 1.47861 * 125.92721 * 179.97438 * 5 4 3 7 7 N 1.31807 * 126.06586 * 325.02468 * 6 5 4 8 8 N 1.40071 * 108.08149 * 180.02562 * 7 6 5 9 9 H 0.97000 * 125.90792 * 179.97438 * 8 7 6 10 10 C 1.35065 * 108.17814 * 0.24013 * 8 7 6 11 11 C 1.35028 * 108.03017 * 359.61020 * 10 8 7 12 12 C 1.50701 * 126.07628 * 180.11099 * 11 10 8 13 13 N 1.46496 * 109.47126 * 260.32329 * 12 11 10 14 14 C 1.39694 * 119.99987 * 180.02562 * 13 12 11 15 15 C 1.39335 * 119.95195 * 359.72945 * 14 13 12 16 16 C 1.38468 * 120.42504 * 179.72154 * 15 14 13 17 17 C 1.37690 * 120.32465 * 0.54935 * 16 15 14 18 18 C 1.40747 * 119.89048 * 359.73378 * 17 16 15 19 19 C 1.41418 * 120.20795 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99757 * 24.39733 * 19 18 17 21 21 C 1.39924 * 119.99973 * 204.40433 * 19 18 17 22 22 N 1.30833 * 120.00186 * 17.88045 * 21 19 18 23 23 Si 1.86799 * 120.00031 * 197.88170 * 21 19 18 24 24 H 1.48498 * 109.46958 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47002 * 120.00105 * 23 21 19 26 26 H 1.48504 * 109.47401 * 239.99983 * 23 21 19 27 27 C 1.38278 * 119.95024 * 180.02562 * 14 13 12 28 28 O 1.34340 * 125.66476 * 180.26349 * 2 1 3 29 29 H 1.08997 * 109.46824 * 90.00227 * 1 2 3 30 30 H 1.08998 * 109.46562 * 210.00433 * 1 2 3 31 31 H 1.08999 * 109.47107 * 329.99543 * 1 2 3 32 32 H 1.08002 * 126.49095 * 359.95930 * 3 2 1 33 33 H 1.07998 * 126.63354 * 179.97438 * 4 3 2 34 34 H 1.08001 * 125.98222 * 179.75785 * 10 8 7 35 35 H 1.08998 * 109.47786 * 20.32689 * 12 11 10 36 36 H 1.09006 * 109.47161 * 140.32788 * 12 11 10 37 37 H 0.96997 * 119.99920 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.78635 * 359.97438 * 15 14 13 39 39 H 1.08002 * 119.84129 * 180.28240 * 16 15 14 40 40 H 1.08001 * 120.05655 * 179.74549 * 17 16 15 41 41 H 0.96998 * 120.00646 * 180.02562 * 22 21 19 42 42 H 1.07999 * 120.16217 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2924 1.0943 0.0000 4 6 3.6282 0.6438 -0.0006 5 6 3.5833 -0.7147 -0.0004 6 6 4.7512 -1.6214 -0.0013 7 7 5.8989 -1.4078 -0.6132 8 7 6.7340 -2.5049 -0.3664 9 1 7.6398 -2.6158 -0.6953 10 6 6.0576 -3.3844 0.4039 11 6 4.8346 -2.8686 0.6517 12 6 3.7493 -3.5140 1.4743 13 7 2.7756 -4.1511 0.5843 14 6 1.6713 -4.8180 1.1203 15 6 1.4999 -4.8814 2.5016 16 6 0.4059 -5.5349 3.0432 17 6 -0.5194 -6.1394 2.2220 18 6 -0.3564 -6.0887 0.8249 19 6 -1.3029 -6.7068 -0.0247 20 1 -2.3140 -6.8670 0.3194 21 6 -0.9295 -7.1110 -1.3112 22 7 0.3364 -7.2472 -1.6125 23 14 -2.2382 -7.4561 -2.5986 24 1 -3.5829 -7.2305 -2.0103 25 1 -2.0451 -6.5469 -3.7568 26 1 -2.1271 -8.8658 -3.0521 27 6 0.7531 -5.4195 0.2793 28 8 2.2903 -1.0914 -0.0050 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.9615 2.1224 -0.0006 33 1 4.5158 1.2590 -0.0012 34 1 6.4307 -4.3329 0.7611 35 1 4.1887 -4.2659 2.1299 36 1 3.2493 -2.7549 2.0760 37 1 2.8977 -4.1099 -0.3770 38 1 2.2229 -4.4144 3.1539 39 1 0.2799 -5.5744 4.1151 40 1 -1.3689 -6.6515 2.6492 41 1 0.5954 -7.5270 -2.5044 42 1 0.8873 -5.3747 -0.7914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313414883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:26 Heat of formation + Delta-G solvation = 110.540171 kcal Electronic energy + Delta-G solvation = -26312.350261 eV Core-core repulsion = 22646.224968 eV Total energy + Delta-G solvation = -3666.125292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.45777 -41.21536 -37.68105 -35.00795 -33.32313 -33.12466 -32.84448 -31.04026 -30.67384 -29.34169 -27.71112 -26.57604 -25.16038 -24.48056 -22.59673 -21.30864 -21.06291 -20.36561 -19.83691 -19.55616 -17.95696 -17.12024 -16.41974 -16.07555 -15.68988 -14.93467 -14.69620 -14.61939 -14.55188 -14.17098 -13.92812 -13.18473 -13.05718 -12.96992 -12.87613 -12.73627 -12.54927 -12.48798 -12.24523 -11.94753 -11.70955 -11.51926 -11.06563 -10.95466 -10.83424 -10.48438 -10.34278 -10.14984 -9.70559 -9.59826 -9.37562 -9.16009 -8.79033 -8.64429 -8.03248 -7.22163 -6.65624 -6.02805 -4.23489 1.23723 1.85817 2.29891 2.46528 2.91506 2.93562 3.14085 3.19657 3.23782 3.32126 3.42113 4.03176 4.41229 4.62505 4.73099 4.81160 4.95126 5.06552 5.11347 5.27893 5.44276 5.56505 5.57336 5.78012 5.78282 5.91622 5.99172 6.01560 6.16454 6.28098 6.35183 6.38844 6.57676 6.68304 6.96813 7.01079 7.20186 7.21522 7.22325 7.44584 7.48027 7.55076 7.91646 8.05992 8.20988 8.26843 8.58556 8.84381 8.94400 9.10092 9.22115 10.32821 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.003830 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.251840 B = 7308.505882 C = 7862.475433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.012 3.988 3 C -0.224 4.224 4 C -0.169 4.169 5 C 0.049 3.951 6 C 0.163 3.837 7 N -0.271 5.271 8 N -0.470 5.470 9 H 0.443 0.557 10 C 0.078 3.922 11 C -0.225 4.225 12 C 0.215 3.785 13 N -0.750 5.750 14 C 0.222 3.778 15 C -0.299 4.299 16 C -0.066 4.066 17 C -0.259 4.259 18 C 0.139 3.861 19 C -0.465 4.465 20 H 0.075 0.925 21 C 0.079 3.921 22 N -0.793 5.793 23 Si 0.901 3.099 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.276 1.276 27 C -0.231 4.231 28 O -0.143 6.143 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.184 0.816 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.389 0.611 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.275 0.725 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 12.029 1.110 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.040 4.040 3 C -0.243 4.243 4 C -0.190 4.190 5 C -0.003 4.003 6 C -0.002 4.002 7 N -0.097 5.097 8 N -0.179 5.179 9 H 0.288 0.712 10 C -0.069 4.069 11 C -0.236 4.236 12 C 0.089 3.911 13 N -0.383 5.383 14 C 0.123 3.877 15 C -0.322 4.322 16 C -0.085 4.085 17 C -0.280 4.280 18 C 0.136 3.864 19 C -0.496 4.496 20 H 0.093 0.907 21 C -0.138 4.138 22 N -0.419 5.419 23 Si 0.726 3.274 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.202 1.202 27 C -0.255 4.255 28 O -0.036 6.036 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.201 0.799 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.222 0.778 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.432 12.473 0.386 16.265 hybrid contribution -0.163 -0.716 -0.687 1.006 sum 10.270 11.757 -0.301 15.613 Atomic orbital electron populations 1.20387 0.84833 1.04534 1.03802 1.22659 0.94210 0.83870 1.03276 1.21451 0.92367 0.99377 1.11150 1.21708 0.98185 0.92904 1.06200 1.18639 0.81136 0.90945 1.09570 1.19057 0.90579 0.93284 0.97308 1.77606 1.01831 1.07863 1.22421 1.46167 1.15368 1.14578 1.41803 0.71205 1.22432 0.93000 0.96307 0.95203 1.20365 0.97332 0.96447 1.09493 1.19165 0.86377 0.94768 0.90761 1.44407 1.25131 1.61832 1.06968 1.17622 0.86577 0.91272 0.92193 1.19867 1.03429 1.16493 0.92423 1.20262 0.94501 0.97083 0.96661 1.20836 1.02372 1.10940 0.93839 1.17306 0.90906 0.87386 0.90779 1.19568 0.97953 1.34748 0.97284 0.90669 1.25846 0.95647 0.93158 0.99174 1.69880 1.16960 1.34117 1.20947 0.86392 0.82157 0.78354 0.80545 1.18462 1.19907 1.20198 1.20701 0.98906 1.07436 0.98437 1.84204 1.14906 1.34257 1.70283 0.89889 0.89592 0.89381 0.83336 0.83405 0.79866 0.92646 0.92764 0.77832 0.89755 0.89804 0.89566 0.91383 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.41 36.01 0.37 -0.53 16 2 C 0.01 0.17 7.32 -35.56 -0.26 -0.09 16 3 C -0.22 -2.88 10.78 -39.80 -0.43 -3.31 16 4 C -0.17 -2.35 10.85 -39.38 -0.43 -2.77 16 5 C 0.05 0.78 6.98 -36.48 -0.25 0.53 16 6 C 0.16 2.49 7.07 -82.88 -0.59 1.91 16 7 N -0.27 -3.80 12.75 33.36 0.43 -3.38 16 8 N -0.47 -4.84 7.35 30.41 0.22 -4.61 16 9 H 0.44 2.79 8.96 -182.62 -1.64 1.15 16 10 C 0.08 0.85 11.87 -17.27 -0.21 0.65 16 11 C -0.22 -3.24 5.50 -104.71 -0.58 -3.81 16 12 C 0.22 3.54 5.06 -5.20 -0.03 3.51 16 13 N -0.75 -14.82 5.72 -59.86 -0.34 -15.16 16 14 C 0.22 5.24 6.64 -83.85 -0.56 4.68 16 15 C -0.30 -6.86 9.32 -39.09 -0.36 -7.22 16 16 C -0.07 -1.54 10.01 -39.70 -0.40 -1.94 16 17 C -0.26 -6.61 9.79 -38.83 -0.38 -6.99 16 18 C 0.14 3.82 5.57 -106.85 -0.60 3.22 16 19 C -0.47 -12.70 9.05 -37.74 -0.34 -13.04 16 20 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 21 C 0.08 2.03 5.14 -17.35 -0.09 1.94 16 22 N -0.79 -21.02 10.95 55.55 0.61 -20.41 16 23 Si 0.90 19.15 29.60 -169.99 -5.03 14.12 16 24 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 27 C -0.23 -6.11 8.53 -38.68 -0.33 -6.44 16 28 O -0.14 -2.44 10.55 4.60 0.05 -2.40 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 36 H 0.05 0.95 7.95 -51.93 -0.41 0.54 16 37 H 0.39 7.80 8.47 -40.82 -0.35 7.46 16 38 H 0.08 1.75 6.70 -52.49 -0.35 1.40 16 39 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 41 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.12 3.18 6.15 -52.49 -0.32 2.86 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -31.88 365.23 -10.42 -42.30 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -6.41 Total: 13.72 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -5.44 Total: -29.69 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.91 Total: -43.57 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: 0.05 Total: -2.40 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.88 -10.42 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313414883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.844 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds