Wall clock time and date at job start Tue Mar 31 2020 15:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34693 * 125.66500 * 2 1 4 4 C 1.40978 * 107.02758 * 180.02562 * 3 2 1 5 5 C 1.35917 * 106.74023 * 359.97438 * 4 3 2 6 6 C 1.47861 * 125.92721 * 179.97438 * 5 4 3 7 7 N 1.31807 * 126.06586 * 325.02468 * 6 5 4 8 8 N 1.40071 * 108.08149 * 180.02562 * 7 6 5 9 9 H 0.97000 * 125.90792 * 179.97438 * 8 7 6 10 10 C 1.35065 * 108.17814 * 0.24013 * 8 7 6 11 11 C 1.35028 * 108.03017 * 359.61020 * 10 8 7 12 12 C 1.50701 * 126.07628 * 180.11099 * 11 10 8 13 13 N 1.46496 * 109.47126 * 260.32329 * 12 11 10 14 14 C 1.39694 * 119.99987 * 180.02562 * 13 12 11 15 15 C 1.39335 * 119.95195 * 359.72945 * 14 13 12 16 16 C 1.38468 * 120.42504 * 179.72154 * 15 14 13 17 17 C 1.37690 * 120.32465 * 0.54935 * 16 15 14 18 18 C 1.40747 * 119.89048 * 359.73378 * 17 16 15 19 19 C 1.41418 * 120.20795 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99757 * 24.39733 * 19 18 17 21 21 C 1.39924 * 119.99973 * 204.40433 * 19 18 17 22 22 N 1.30833 * 120.00186 * 17.88045 * 21 19 18 23 23 Si 1.86799 * 120.00031 * 197.88170 * 21 19 18 24 24 H 1.48498 * 109.46958 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47002 * 120.00105 * 23 21 19 26 26 H 1.48504 * 109.47401 * 239.99983 * 23 21 19 27 27 C 1.38278 * 119.95024 * 180.02562 * 14 13 12 28 28 O 1.34340 * 125.66476 * 180.26349 * 2 1 3 29 29 H 1.08997 * 109.46824 * 90.00227 * 1 2 3 30 30 H 1.08998 * 109.46562 * 210.00433 * 1 2 3 31 31 H 1.08999 * 109.47107 * 329.99543 * 1 2 3 32 32 H 1.08002 * 126.49095 * 359.95930 * 3 2 1 33 33 H 1.07998 * 126.63354 * 179.97438 * 4 3 2 34 34 H 1.08001 * 125.98222 * 179.75785 * 10 8 7 35 35 H 1.08998 * 109.47786 * 20.32689 * 12 11 10 36 36 H 1.09006 * 109.47161 * 140.32788 * 12 11 10 37 37 H 0.96997 * 119.99920 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.78635 * 359.97438 * 15 14 13 39 39 H 1.08002 * 119.84129 * 180.28240 * 16 15 14 40 40 H 1.08001 * 120.05655 * 179.74549 * 17 16 15 41 41 H 0.96998 * 120.00646 * 180.02562 * 22 21 19 42 42 H 1.07999 * 120.16217 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2924 1.0943 0.0000 4 6 3.6282 0.6438 -0.0006 5 6 3.5833 -0.7147 -0.0004 6 6 4.7512 -1.6214 -0.0013 7 7 5.8989 -1.4078 -0.6132 8 7 6.7340 -2.5049 -0.3664 9 1 7.6398 -2.6158 -0.6953 10 6 6.0576 -3.3844 0.4039 11 6 4.8346 -2.8686 0.6517 12 6 3.7493 -3.5140 1.4743 13 7 2.7756 -4.1511 0.5843 14 6 1.6713 -4.8180 1.1203 15 6 1.4999 -4.8814 2.5016 16 6 0.4059 -5.5349 3.0432 17 6 -0.5194 -6.1394 2.2220 18 6 -0.3564 -6.0887 0.8249 19 6 -1.3029 -6.7068 -0.0247 20 1 -2.3140 -6.8670 0.3194 21 6 -0.9295 -7.1110 -1.3112 22 7 0.3364 -7.2472 -1.6125 23 14 -2.2382 -7.4561 -2.5986 24 1 -3.5829 -7.2305 -2.0103 25 1 -2.0451 -6.5469 -3.7568 26 1 -2.1271 -8.8658 -3.0521 27 6 0.7531 -5.4195 0.2793 28 8 2.2903 -1.0914 -0.0050 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.9615 2.1224 -0.0006 33 1 4.5158 1.2590 -0.0012 34 1 6.4307 -4.3329 0.7611 35 1 4.1887 -4.2659 2.1299 36 1 3.2493 -2.7549 2.0760 37 1 2.8977 -4.1099 -0.3770 38 1 2.2229 -4.4144 3.1539 39 1 0.2799 -5.5744 4.1151 40 1 -1.3689 -6.6515 2.6492 41 1 0.5954 -7.5270 -2.5044 42 1 0.8873 -5.3747 -0.7914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313414883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:25 Heat of formation + Delta-G solvation = 91.694844 kcal Electronic energy + Delta-G solvation = -26313.167455 eV Core-core repulsion = 22646.224968 eV Total energy + Delta-G solvation = -3666.942487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.54715 -42.21077 -39.51874 -36.65440 -35.13978 -34.20681 -33.92045 -32.33541 -31.69273 -31.28766 -29.29076 -27.58582 -27.08691 -25.92029 -23.62635 -22.88907 -22.34118 -21.73445 -21.40161 -20.67594 -19.08662 -18.93898 -17.49851 -17.43581 -17.19426 -16.48268 -16.41531 -16.04965 -15.63797 -15.45186 -15.30159 -14.67632 -14.38130 -14.34702 -14.03818 -13.97600 -13.78760 -13.77162 -13.57515 -13.40502 -13.29559 -12.79654 -12.71349 -12.67264 -12.46440 -12.07582 -11.89522 -11.50907 -11.27303 -11.17539 -11.03826 -10.72504 -10.42995 -9.84194 -9.19618 -9.08858 -8.58652 -7.81462 -6.27790 0.17645 0.87692 1.11712 1.30362 1.38825 1.40290 1.47530 1.53643 1.60331 1.90550 2.24538 2.27256 2.85789 3.10118 3.44561 3.70152 3.92519 3.93228 4.06179 4.09823 4.34627 4.47408 4.56823 4.58542 4.65845 4.68798 4.80297 4.81363 4.86284 4.99567 5.04423 5.06157 5.17837 5.23701 5.30699 5.36402 5.50606 5.59926 5.65702 6.01774 6.09335 6.16944 6.27164 6.30774 6.32952 6.47440 6.63651 7.00094 7.10720 7.11664 7.30856 8.41620 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.003830 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.251840 B = 7308.505882 C = 7862.475433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.012 4.012 3 C -0.215 4.215 4 C -0.169 4.169 5 C 0.020 3.980 6 C 0.145 3.855 7 N -0.291 5.291 8 N -0.449 5.449 9 H 0.462 0.538 10 C 0.107 3.893 11 C -0.258 4.258 12 C 0.222 3.778 13 N -0.742 5.742 14 C 0.228 3.772 15 C -0.301 4.301 16 C -0.061 4.061 17 C -0.286 4.286 18 C 0.111 3.889 19 C -0.504 4.504 20 H 0.071 0.929 21 C 0.038 3.962 22 N -0.823 5.823 23 Si 0.976 3.024 24 H -0.258 1.258 25 H -0.267 1.267 26 H -0.266 1.266 27 C -0.258 4.258 28 O -0.175 6.175 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.224 0.776 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.385 0.615 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.283 0.717 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.979 12.811 1.233 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C -0.234 4.234 4 C -0.190 4.190 5 C -0.031 4.031 6 C -0.019 4.019 7 N -0.118 5.118 8 N -0.160 5.160 9 H 0.311 0.689 10 C -0.042 4.042 11 C -0.269 4.269 12 C 0.097 3.903 13 N -0.373 5.373 14 C 0.127 3.873 15 C -0.324 4.324 16 C -0.080 4.080 17 C -0.306 4.306 18 C 0.108 3.892 19 C -0.534 4.534 20 H 0.089 0.911 21 C -0.176 4.176 22 N -0.450 5.450 23 Si 0.797 3.203 24 H -0.182 1.182 25 H -0.192 1.192 26 H -0.190 1.190 27 C -0.283 4.283 28 O -0.071 6.071 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.198 0.802 33 H 0.182 0.818 34 H 0.241 0.759 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.217 0.783 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.846 13.289 0.510 17.809 hybrid contribution -0.419 -0.885 -0.669 1.186 sum 11.426 12.404 -0.159 16.866 Atomic orbital electron populations 1.20505 0.83342 1.04939 1.04484 1.23306 0.95326 0.83890 1.03832 1.21817 0.91578 1.00427 1.09567 1.22018 0.99293 0.92451 1.05210 1.19062 0.81074 0.92099 1.10869 1.19191 0.90871 0.93840 0.97982 1.77542 1.01930 1.09425 1.22895 1.46206 1.15817 1.13371 1.40614 0.68897 1.22918 0.91516 0.96789 0.92996 1.20252 0.98293 0.96972 1.11418 1.19157 0.86112 0.94490 0.90532 1.44529 1.24635 1.60818 1.07278 1.17723 0.86807 0.90332 0.92465 1.20185 1.03801 1.15997 0.92369 1.20621 0.93577 0.95547 0.98233 1.20990 1.03574 1.12511 0.93574 1.17675 0.91594 0.87977 0.91959 1.19813 0.98000 1.36597 0.98979 0.91106 1.26672 0.97893 0.92379 1.00672 1.69939 1.18792 1.34445 1.21786 0.85266 0.79024 0.78607 0.77432 1.18156 1.19180 1.19046 1.20592 1.00327 1.09591 0.97770 1.84170 1.15821 1.35926 1.71155 0.89048 0.91848 0.86198 0.80161 0.81835 0.75947 0.91141 0.94159 0.78285 0.87114 0.86455 0.89313 0.90674 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 10.41 71.24 0.74 -1.00 16 2 C -0.01 -0.35 7.32 24.87 0.18 -0.17 16 3 C -0.22 -5.27 10.78 22.13 0.24 -5.03 16 4 C -0.17 -4.59 10.85 22.40 0.24 -4.35 16 5 C 0.02 0.66 6.98 24.28 0.17 0.83 16 6 C 0.15 4.40 7.07 42.38 0.30 4.70 16 7 N -0.29 -7.80 12.75 -48.37 -0.62 -8.42 16 8 N -0.45 -8.07 7.35 -57.69 -0.42 -8.49 16 9 H 0.46 4.35 8.96 -213.34 -1.91 2.44 16 10 C 0.11 2.03 11.87 83.46 0.99 3.02 16 11 C -0.26 -7.11 5.50 -19.92 -0.11 -7.22 16 12 C 0.22 7.12 5.06 85.63 0.43 7.55 16 13 N -0.74 -29.59 5.72 -343.29 -1.96 -31.55 16 14 C 0.23 10.92 6.64 38.16 0.25 11.17 16 15 C -0.30 -13.56 9.32 22.59 0.21 -13.35 16 16 C -0.06 -2.81 10.01 22.19 0.22 -2.59 16 17 C -0.29 -14.91 9.79 22.75 0.22 -14.68 16 18 C 0.11 6.33 5.57 -21.31 -0.12 6.21 16 19 C -0.50 -28.67 9.05 23.46 0.21 -28.46 16 20 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 21 C 0.04 2.02 5.14 85.25 0.44 2.46 16 22 N -0.82 -44.97 10.95 21.82 0.24 -44.73 16 23 Si 0.98 40.02 29.60 68.60 2.03 42.05 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 26 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 27 C -0.26 -14.25 8.53 22.85 0.20 -14.05 16 28 O -0.18 -6.21 10.55 -6.46 -0.07 -6.28 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 34 H 0.22 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.07 2.05 7.93 -2.39 -0.02 2.03 16 36 H 0.04 1.41 7.95 -2.38 -0.02 1.39 16 37 H 0.38 15.89 8.47 -92.71 -0.79 15.11 16 38 H 0.11 4.36 6.70 -2.91 -0.02 4.34 16 39 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.09 4.43 8.06 -2.91 -0.02 4.40 16 41 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 42 H 0.09 5.49 6.15 -2.91 -0.02 5.47 16 Total: -1.00 -72.61 365.23 2.40 -70.21 By element: Atomic # 1 Polarization: 43.79 SS G_CDS: -1.62 Total: 42.17 kcal Atomic # 6 Polarization: -59.78 SS G_CDS: 4.82 Total: -54.95 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -2.77 Total: -93.20 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.07 Total: -6.28 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -72.61 2.40 -70.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313414883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.908 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds