Wall clock time and date at job start Tue Mar 31 2020 14:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38200 * 119.94935 * 2 1 4 4 C 1.38785 * 119.95185 * 180.02562 * 3 2 1 5 5 N 1.39843 * 120.07966 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.53043 * 109.45671 * 275.06483 * 6 5 4 8 8 C 1.53198 * 109.30903 * 178.61322 * 7 6 5 9 9 N 1.46918 * 108.77708 * 54.63481 * 8 7 6 10 10 C 1.36939 * 120.63220 * 126.36606 * 9 8 7 11 11 H 1.08002 * 119.99986 * 327.43375 * 10 9 8 12 12 C 1.38812 * 120.00195 * 147.43140 * 10 9 8 13 13 N 1.31618 * 119.99711 * 351.33769 * 12 10 9 14 14 Si 1.86799 * 120.00120 * 171.33340 * 12 10 9 15 15 H 1.48493 * 109.46995 * 60.00369 * 14 12 10 16 16 H 1.48505 * 109.46982 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47184 * 299.99782 * 14 12 10 18 18 C 1.46930 * 118.73863 * 306.38860 * 9 8 7 19 19 C 1.53037 * 109.46418 * 154.99665 * 6 5 4 20 20 C 1.39122 * 119.84234 * 0.02562 * 4 3 2 21 21 F 1.35100 * 120.05751 * 179.97438 * 20 4 3 22 22 C 1.38238 * 119.88727 * 359.97438 * 20 4 3 23 23 C 1.38233 * 119.94502 * 179.72561 * 2 1 3 24 24 N 1.48011 * 119.91389 * 0.02562 * 23 2 1 25 25 O 1.21803 * 119.99494 * 186.90524 * 24 23 2 26 26 O 1.21798 * 120.00452 * 6.89854 * 24 23 2 27 27 H 1.09003 * 109.47145 * 98.42138 * 1 2 3 28 28 H 1.09001 * 109.46626 * 338.42301 * 1 2 3 29 29 H 1.09002 * 109.47250 * 218.42590 * 1 2 3 30 30 H 1.07998 * 120.01766 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00031 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.46330 * 35.02253 * 6 5 4 33 33 H 1.08990 * 109.49719 * 298.56255 * 7 6 5 34 34 H 1.08997 * 109.50055 * 58.66475 * 7 6 5 35 35 H 1.09001 * 109.58669 * 294.84462 * 8 7 6 36 36 H 1.09003 * 109.70008 * 174.49028 * 8 7 6 37 37 H 0.97012 * 120.00080 * 179.97438 * 13 12 10 38 38 H 1.08989 * 109.58750 * 293.82060 * 18 9 8 39 39 H 1.09005 * 109.70392 * 173.46455 * 18 9 8 40 40 H 1.09004 * 109.49281 * 301.33719 * 19 6 5 41 41 H 1.08996 * 109.49771 * 61.43196 * 19 6 5 42 42 H 1.07993 * 119.97703 * 179.97438 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1975 0.0000 4 6 3.5847 1.1975 -0.0005 5 7 4.2856 2.4076 0.0000 6 6 3.5548 3.6774 0.0017 7 6 3.1890 4.0569 -1.4351 8 6 2.3951 5.3671 -1.4264 9 7 3.1745 6.3876 -0.7125 10 6 3.4488 7.5937 -1.3001 11 1 3.5892 7.6540 -2.3692 12 6 3.5462 8.7389 -0.5216 13 7 3.2093 8.7006 0.7502 14 14 4.1555 10.3341 -1.2789 15 1 3.2532 10.7310 -2.3895 16 1 4.1673 11.4000 -0.2450 17 1 5.5308 10.1392 -1.8040 18 6 3.6545 6.0893 0.6438 19 6 4.4343 4.7711 0.6119 20 6 4.2771 -0.0092 -0.0016 21 9 5.6281 -0.0142 -0.0027 22 6 3.5803 -1.2031 -0.0016 23 6 2.1970 -1.1978 0.0057 24 7 1.4538 -2.4778 0.0113 25 8 2.0536 -3.5296 0.1432 26 8 0.2424 -2.4793 -0.1159 27 1 -0.3633 -0.1505 -1.0166 28 1 -0.3632 0.9557 0.3779 29 1 -0.3634 -0.8051 0.6387 30 1 1.6564 2.1324 0.0004 31 1 5.2556 2.4063 0.0000 32 1 2.6446 3.5718 0.5921 33 1 4.0994 4.1871 -2.0200 34 1 2.5820 3.2667 -1.8769 35 1 1.4425 5.2138 -0.9193 36 1 2.2154 5.6947 -2.4504 37 1 3.2778 9.5008 1.2943 38 1 2.8047 5.9949 1.3196 39 1 4.3073 6.8918 0.9874 40 1 4.7137 4.4890 1.6270 41 1 5.3330 4.8945 0.0077 42 1 4.1163 -2.1407 -0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314992563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:53 Heat of formation + Delta-G solvation = -3.564714 kcal Electronic energy + Delta-G solvation = -27341.284390 eV Core-core repulsion = 23239.441914 eV Total energy + Delta-G solvation = -4101.842476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -49.21326 -42.22701 -40.00677 -38.13499 -36.65515 -35.61338 -33.07102 -32.48439 -31.08732 -30.08371 -29.25747 -27.69526 -25.93665 -24.69605 -23.29566 -22.58536 -21.97333 -21.55215 -19.65927 -19.29885 -18.74896 -17.69326 -17.60435 -17.05440 -16.81852 -16.08642 -16.01844 -15.19056 -14.95580 -14.64385 -14.24541 -14.10372 -13.88158 -13.73771 -13.44382 -13.18723 -13.12599 -12.70514 -12.48547 -12.38930 -12.05368 -11.70411 -11.42227 -11.30216 -11.18560 -11.14231 -10.95732 -10.88244 -10.74584 -10.57555 -10.37737 -10.14613 -9.87533 -9.82305 -9.27358 -8.64815 -7.99218 -6.80884 -5.95414 -3.45552 -0.13888 0.60548 1.29928 1.41149 2.90201 2.96661 3.27924 3.33847 3.34218 3.70014 4.06906 4.22637 4.34701 4.48954 4.84227 4.92381 5.01474 5.14224 5.19381 5.25423 5.27515 5.32717 5.40361 5.44782 5.57261 5.67918 5.78518 5.87563 5.95979 5.99702 6.16446 6.18593 6.24201 6.36024 6.46296 6.55318 6.71441 6.83183 7.10503 7.24484 7.46568 7.63829 7.67845 8.31293 9.05167 9.65133 10.22501 11.13138 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026179 B = 0.002704 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.289497 B =10351.376413 C =10995.683641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.034 3.966 3 C -0.188 4.188 4 C 0.257 3.743 5 N -0.708 5.708 6 C 0.146 3.854 7 C -0.147 4.147 8 C 0.147 3.853 9 N -0.591 5.591 10 C -0.259 4.259 11 H 0.064 0.936 12 C 0.008 3.992 13 N -0.905 5.905 14 Si 0.907 3.093 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.283 1.283 18 C 0.175 3.825 19 C -0.148 4.148 20 C 0.008 3.992 21 F -0.130 7.130 22 C -0.036 4.036 23 C -0.100 4.100 24 N 0.048 4.952 25 O -0.187 6.187 26 O -0.170 6.170 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.407 0.593 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.020 0.980 36 H 0.059 0.941 37 H 0.257 0.743 38 H 0.022 0.978 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 -15.872 -0.140 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.031 3.969 3 C -0.212 4.212 4 C 0.143 3.857 5 N -0.330 5.330 6 C 0.043 3.957 7 C -0.187 4.187 8 C 0.020 3.980 9 N -0.314 5.314 10 C -0.389 4.389 11 H 0.082 0.918 12 C -0.191 4.191 13 N -0.549 5.549 14 Si 0.736 3.264 15 H -0.207 1.207 16 H -0.215 1.215 17 H -0.209 1.209 18 C 0.049 3.951 19 C -0.188 4.188 20 C -0.017 4.017 21 F -0.109 7.109 22 C -0.057 4.057 23 C -0.188 4.188 24 N 0.560 4.440 25 O -0.396 6.396 26 O -0.382 6.382 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.175 0.825 31 H 0.243 0.757 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.210 -14.886 -0.013 14.888 hybrid contribution 0.962 0.463 -0.346 1.123 sum 0.752 -14.423 -0.359 14.447 Atomic orbital electron populations 1.21304 0.88290 1.04485 1.04724 1.19610 0.97908 0.89600 0.89795 1.20541 0.90942 0.98438 1.11286 1.18255 0.92256 0.85797 0.89349 1.45653 1.09349 1.02842 1.75107 1.21356 0.95703 0.80878 0.97737 1.22539 1.01505 0.99413 0.95252 1.20890 0.92377 0.87702 0.97044 1.44018 1.59433 1.13469 1.14492 1.19115 1.43303 0.84010 0.92439 0.91797 1.25215 0.99755 0.97802 0.96355 1.69922 1.50375 1.28492 1.06079 0.86313 0.78865 0.82923 0.78281 1.20717 1.21485 1.20910 1.20777 0.96065 0.91822 0.86443 1.22587 0.99573 0.97448 0.99225 1.16592 0.77560 0.91818 1.15743 1.91508 1.27405 1.97021 1.94924 1.20497 0.91826 0.98869 0.94546 1.20156 0.91212 0.83268 1.24135 1.43333 1.00946 1.02508 0.97215 1.94521 1.70387 1.20182 1.54522 1.94458 0.96429 1.93745 1.53581 0.89073 0.90564 0.88429 0.82487 0.75661 0.90046 0.91746 0.92657 0.96174 0.92224 0.93329 0.95959 0.88665 0.92463 0.91921 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.61 36.00 0.31 -0.87 16 2 C 0.03 0.36 5.88 -104.64 -0.62 -0.26 16 3 C -0.19 -1.99 8.47 -39.39 -0.33 -2.32 16 4 C 0.26 2.88 6.64 -83.67 -0.56 2.32 16 5 N -0.71 -8.18 5.25 -52.06 -0.27 -8.45 16 6 C 0.15 1.98 2.11 -67.89 -0.14 1.83 16 7 C -0.15 -2.14 5.59 -26.61 -0.15 -2.29 16 8 C 0.15 2.69 6.52 -3.71 -0.02 2.67 16 9 N -0.59 -13.34 2.98 -172.32 -0.51 -13.85 16 10 C -0.26 -6.60 9.57 -15.06 -0.14 -6.75 16 11 H 0.06 1.61 7.84 -52.49 -0.41 1.20 16 12 C 0.01 0.20 5.09 -17.43 -0.09 0.12 16 13 N -0.90 -24.58 11.03 55.49 0.61 -23.96 16 14 Si 0.91 20.55 29.56 -169.99 -5.03 15.52 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.18 3.69 5.24 -3.71 -0.02 3.67 16 19 C -0.15 -2.36 5.55 -26.61 -0.15 -2.51 16 20 C 0.01 0.08 7.31 -39.25 -0.29 -0.20 16 21 F -0.13 -1.48 16.64 2.25 0.04 -1.44 16 22 C -0.04 -0.40 9.53 -39.54 -0.38 -0.77 16 23 C -0.10 -1.17 6.83 -79.92 -0.55 -1.72 16 24 N 0.05 0.64 4.45 33.98 0.15 0.79 16 25 O -0.19 -2.62 18.46 -29.46 -0.54 -3.16 16 26 O -0.17 -2.25 15.38 -29.46 -0.45 -2.70 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.57 8.02 -51.93 -0.42 0.15 16 29 H 0.10 0.93 5.97 -51.93 -0.31 0.62 16 30 H 0.16 1.56 6.13 -52.49 -0.32 1.24 16 31 H 0.41 4.44 8.09 -40.82 -0.33 4.11 16 32 H 0.08 1.09 6.49 -51.93 -0.34 0.75 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.71 7.73 -51.93 -0.40 0.31 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 1.10 7.93 -51.93 -0.41 0.68 16 37 H 0.26 6.80 8.31 -40.81 -0.34 6.46 16 38 H 0.02 0.49 8.14 -51.94 -0.42 0.07 16 39 H 0.10 2.31 6.14 -51.93 -0.32 1.99 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.16 1.52 7.62 -52.49 -0.40 1.12 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -27.41 347.15 -9.23 -36.64 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.33 Total: 2.47 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -3.12 Total: -7.07 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.02 Total: -45.48 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -1.00 Total: -5.86 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.41 -9.23 -36.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314992563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.071 kcal (2) G-P(sol) polarization free energy of solvation -27.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds