Wall clock time and date at job start Tue Mar 31 2020 14:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38200 * 119.94935 * 2 1 4 4 C 1.38785 * 119.95185 * 180.02562 * 3 2 1 5 5 N 1.39843 * 120.07966 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.53043 * 109.45671 * 275.06483 * 6 5 4 8 8 C 1.53198 * 109.30903 * 178.61322 * 7 6 5 9 9 N 1.46918 * 108.77708 * 54.63481 * 8 7 6 10 10 C 1.36939 * 120.63220 * 126.36606 * 9 8 7 11 11 H 1.08002 * 119.99986 * 327.43375 * 10 9 8 12 12 C 1.38812 * 120.00195 * 147.43140 * 10 9 8 13 13 N 1.31618 * 119.99711 * 351.33769 * 12 10 9 14 14 Si 1.86799 * 120.00120 * 171.33340 * 12 10 9 15 15 H 1.48493 * 109.46995 * 60.00369 * 14 12 10 16 16 H 1.48505 * 109.46982 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47184 * 299.99782 * 14 12 10 18 18 C 1.46930 * 118.73863 * 306.38860 * 9 8 7 19 19 C 1.53037 * 109.46418 * 154.99665 * 6 5 4 20 20 C 1.39122 * 119.84234 * 0.02562 * 4 3 2 21 21 F 1.35100 * 120.05751 * 179.97438 * 20 4 3 22 22 C 1.38238 * 119.88727 * 359.97438 * 20 4 3 23 23 C 1.38233 * 119.94502 * 179.72561 * 2 1 3 24 24 N 1.48011 * 119.91389 * 0.02562 * 23 2 1 25 25 O 1.21803 * 119.99494 * 186.90524 * 24 23 2 26 26 O 1.21798 * 120.00452 * 6.89854 * 24 23 2 27 27 H 1.09003 * 109.47145 * 98.42138 * 1 2 3 28 28 H 1.09001 * 109.46626 * 338.42301 * 1 2 3 29 29 H 1.09002 * 109.47250 * 218.42590 * 1 2 3 30 30 H 1.07998 * 120.01766 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00031 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.46330 * 35.02253 * 6 5 4 33 33 H 1.08990 * 109.49719 * 298.56255 * 7 6 5 34 34 H 1.08997 * 109.50055 * 58.66475 * 7 6 5 35 35 H 1.09001 * 109.58669 * 294.84462 * 8 7 6 36 36 H 1.09003 * 109.70008 * 174.49028 * 8 7 6 37 37 H 0.97012 * 120.00080 * 179.97438 * 13 12 10 38 38 H 1.08989 * 109.58750 * 293.82060 * 18 9 8 39 39 H 1.09005 * 109.70392 * 173.46455 * 18 9 8 40 40 H 1.09004 * 109.49281 * 301.33719 * 19 6 5 41 41 H 1.08996 * 109.49771 * 61.43196 * 19 6 5 42 42 H 1.07993 * 119.97703 * 179.97438 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1975 0.0000 4 6 3.5847 1.1975 -0.0005 5 7 4.2856 2.4076 0.0000 6 6 3.5548 3.6774 0.0017 7 6 3.1890 4.0569 -1.4351 8 6 2.3951 5.3671 -1.4264 9 7 3.1745 6.3876 -0.7125 10 6 3.4488 7.5937 -1.3001 11 1 3.5892 7.6540 -2.3692 12 6 3.5462 8.7389 -0.5216 13 7 3.2093 8.7006 0.7502 14 14 4.1555 10.3341 -1.2789 15 1 3.2532 10.7310 -2.3895 16 1 4.1673 11.4000 -0.2450 17 1 5.5308 10.1392 -1.8040 18 6 3.6545 6.0893 0.6438 19 6 4.4343 4.7711 0.6119 20 6 4.2771 -0.0092 -0.0016 21 9 5.6281 -0.0142 -0.0027 22 6 3.5803 -1.2031 -0.0016 23 6 2.1970 -1.1978 0.0057 24 7 1.4538 -2.4778 0.0113 25 8 2.0536 -3.5296 0.1432 26 8 0.2424 -2.4793 -0.1159 27 1 -0.3633 -0.1505 -1.0166 28 1 -0.3632 0.9557 0.3779 29 1 -0.3634 -0.8051 0.6387 30 1 1.6564 2.1324 0.0004 31 1 5.2556 2.4063 0.0000 32 1 2.6446 3.5718 0.5921 33 1 4.0994 4.1871 -2.0200 34 1 2.5820 3.2667 -1.8769 35 1 1.4425 5.2138 -0.9193 36 1 2.2154 5.6947 -2.4504 37 1 3.2778 9.5008 1.2943 38 1 2.8047 5.9949 1.3196 39 1 4.3073 6.8918 0.9874 40 1 4.7137 4.4890 1.6270 41 1 5.3330 4.8945 0.0077 42 1 4.1163 -2.1407 -0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314992563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:52 Heat of formation + Delta-G solvation = -16.704278 kcal Electronic energy + Delta-G solvation = -27341.854165 eV Core-core repulsion = 23239.441914 eV Total energy + Delta-G solvation = -4102.412250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.08498 -43.20013 -40.95452 -39.38065 -37.65740 -36.89533 -34.46815 -33.49787 -32.44271 -31.50301 -30.52447 -28.51685 -27.28249 -26.00864 -24.37698 -23.94265 -23.11584 -22.67952 -21.00764 -20.23779 -19.77322 -18.94299 -18.59137 -18.31718 -17.91936 -17.06673 -16.91671 -16.77215 -16.12722 -15.77863 -15.36494 -15.34296 -15.00450 -14.88904 -14.73980 -14.54407 -14.15164 -13.82085 -13.52632 -13.36410 -13.17915 -12.98815 -12.86525 -12.63853 -12.50767 -12.42024 -12.32982 -12.18270 -12.06631 -11.93978 -11.79425 -11.65698 -11.35242 -11.19820 -10.56480 -10.10090 -8.93366 -8.63261 -7.89401 -5.40723 -1.09623 -0.22604 0.34850 0.47801 1.47552 1.48207 1.54746 1.92572 2.10658 2.49396 2.83578 3.23711 3.28889 3.41874 3.61360 3.67222 3.78867 3.94494 4.05169 4.12780 4.24429 4.41882 4.43694 4.48668 4.64176 4.69242 4.73771 4.80188 4.82081 4.93767 5.00836 5.06029 5.11847 5.14560 5.17601 5.32968 5.48783 5.52819 5.63598 5.72769 5.84276 6.32884 6.41335 6.64971 7.15842 7.84472 8.35393 9.16277 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026179 B = 0.002704 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.289497 B =10351.376413 C =10995.683641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.038 3.962 3 C -0.185 4.185 4 C 0.257 3.743 5 N -0.704 5.704 6 C 0.160 3.840 7 C -0.133 4.133 8 C 0.143 3.857 9 N -0.611 5.611 10 C -0.265 4.265 11 H 0.063 0.937 12 C -0.044 4.044 13 N -0.933 5.933 14 Si 0.964 3.036 15 H -0.277 1.277 16 H -0.295 1.295 17 H -0.279 1.279 18 C 0.181 3.819 19 C -0.134 4.134 20 C 0.008 3.992 21 F -0.131 7.131 22 C -0.034 4.034 23 C -0.109 4.109 24 N 0.048 4.952 25 O -0.216 6.216 26 O -0.167 6.167 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.169 0.831 31 H 0.412 0.588 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.054 0.946 37 H 0.251 0.749 38 H 0.006 0.994 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -16.807 -0.766 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.035 3.965 3 C -0.209 4.209 4 C 0.144 3.856 5 N -0.326 5.326 6 C 0.056 3.944 7 C -0.173 4.173 8 C 0.017 3.983 9 N -0.335 5.335 10 C -0.395 4.395 11 H 0.081 0.919 12 C -0.240 4.240 13 N -0.579 5.579 14 Si 0.792 3.208 15 H -0.202 1.202 16 H -0.221 1.221 17 H -0.205 1.205 18 C 0.055 3.945 19 C -0.174 4.174 20 C -0.017 4.017 21 F -0.110 7.110 22 C -0.055 4.055 23 C -0.197 4.197 24 N 0.556 4.444 25 O -0.419 6.419 26 O -0.381 6.381 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.186 0.814 31 H 0.249 0.751 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.313 -15.907 -0.652 15.923 hybrid contribution 0.945 0.731 -0.175 1.207 sum 0.632 -15.176 -0.826 15.211 Atomic orbital electron populations 1.21366 0.87100 1.05300 1.05100 1.19802 0.98788 0.89095 0.88790 1.20649 0.90634 0.98762 1.10832 1.18302 0.92520 0.85428 0.89332 1.45337 1.09463 1.02193 1.75606 1.21026 0.95519 0.80947 0.96891 1.22347 1.00907 0.97976 0.96054 1.21028 0.92745 0.88276 0.96236 1.44271 1.60591 1.13618 1.15007 1.19412 1.42197 0.85353 0.92565 0.91934 1.25872 1.00757 1.00527 0.96807 1.70079 1.52046 1.28657 1.07085 0.85401 0.78455 0.79564 0.77336 1.20250 1.22086 1.20488 1.20534 0.95203 0.93260 0.85549 1.22296 0.98883 0.95621 1.00593 1.16574 0.77486 0.91789 1.15824 1.91509 1.27541 1.97022 1.94955 1.20595 0.91658 0.99316 0.93922 1.20302 0.91536 0.82841 1.24983 1.43537 1.00971 1.02888 0.96961 1.94520 1.70429 1.20924 1.55981 1.94443 0.96725 1.93891 1.53081 0.88317 0.88735 0.89084 0.81364 0.75087 0.89134 0.92622 0.89973 0.95611 0.92704 0.94022 0.97627 0.92440 0.90715 0.92340 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.61 71.23 0.61 -1.38 16 2 C 0.04 0.70 5.88 -19.88 -0.12 0.58 16 3 C -0.19 -3.28 8.47 22.39 0.19 -3.09 16 4 C 0.26 4.96 6.64 38.21 0.25 5.21 16 5 N -0.70 -14.10 5.25 -318.61 -1.67 -15.77 16 6 C 0.16 3.89 2.11 45.02 0.09 3.98 16 7 C -0.13 -3.51 5.59 30.67 0.17 -3.34 16 8 C 0.14 5.02 6.52 86.37 0.56 5.59 16 9 N -0.61 -27.47 2.98 -699.10 -2.09 -29.56 16 10 C -0.26 -13.57 9.57 84.03 0.80 -12.76 16 11 H 0.06 3.15 7.84 -2.91 -0.02 3.12 16 12 C -0.04 -2.30 5.09 84.86 0.43 -1.87 16 13 N -0.93 -51.88 11.03 21.65 0.24 -51.64 16 14 Si 0.96 42.64 29.56 68.60 2.03 44.67 16 15 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 16 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 18 C 0.18 7.64 5.24 86.36 0.45 8.10 16 19 C -0.13 -4.07 5.55 30.67 0.17 -3.90 16 20 C 0.01 0.15 7.31 22.48 0.16 0.32 16 21 F -0.13 -2.69 16.64 44.97 0.75 -1.94 16 22 C -0.03 -0.67 9.53 22.29 0.21 -0.46 16 23 C -0.11 -2.33 6.83 36.40 0.25 -2.08 16 24 N 0.05 1.21 4.45 -46.41 -0.21 1.00 16 25 O -0.22 -5.92 18.46 18.88 0.35 -5.57 16 26 O -0.17 -4.17 15.38 18.89 0.29 -3.88 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.09 8.02 -2.39 -0.02 1.07 16 29 H 0.09 1.54 5.97 -2.39 -0.01 1.52 16 30 H 0.17 2.64 6.13 -2.91 -0.02 2.62 16 31 H 0.41 7.80 8.09 -92.71 -0.75 7.05 16 32 H 0.09 2.11 6.49 -2.39 -0.02 2.10 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.78 7.73 -2.39 -0.02 1.76 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 37 H 0.25 13.64 8.31 -92.70 -0.77 12.87 16 38 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.06 2.86 6.14 -2.38 -0.01 2.85 16 40 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.17 2.95 7.62 -2.91 -0.02 2.93 16 Total: -1.00 -59.39 347.15 4.26 -55.13 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.32 Total: 12.66 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 4.25 Total: -5.10 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -3.73 Total: -95.96 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.64 Total: -9.45 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.75 Total: -1.94 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -59.39 4.26 -55.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314992563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.423 kcal (2) G-P(sol) polarization free energy of solvation -59.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds