Wall clock time and date at job start Tue Mar 31 2020 15:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33515 * 125.68831 * 2 1 4 4 C 1.32560 * 109.15989 * 180.31018 * 3 2 1 5 5 C 1.40935 * 132.32344 * 179.75399 * 4 3 2 6 6 C 1.36024 * 119.32464 * 179.97438 * 5 4 3 7 7 C 1.40473 * 119.69461 * 0.02562 * 6 5 4 8 8 C 1.34955 * 120.29791 * 359.97438 * 7 6 5 9 9 N 1.36490 * 120.61142 * 0.02562 * 8 7 6 10 10 C 1.35103 * 125.68856 * 179.86216 * 2 1 3 11 11 C 1.50703 * 126.40952 * 359.95007 * 10 2 1 12 12 N 1.46504 * 109.47206 * 269.69593 * 11 10 2 13 13 C 1.39782 * 119.99703 * 180.02562 * 12 11 10 14 14 C 1.38949 * 120.00671 * 359.72819 * 13 12 11 15 15 C 1.38012 * 119.99050 * 179.72628 * 14 13 12 16 16 C 1.38898 * 120.00551 * 0.54247 * 15 14 13 17 17 O 1.35803 * 119.99392 * 179.70483 * 16 15 14 18 18 C 1.34812 * 117.00123 * 174.48490 * 17 16 15 19 19 H 1.07998 * 119.99716 * 5.05712 * 18 17 16 20 20 C 1.38612 * 119.99865 * 185.05868 * 18 17 16 21 21 N 1.31584 * 119.99801 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00179 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47124 * 90.00205 * 22 20 18 24 24 H 1.48499 * 109.47179 * 209.99928 * 22 20 18 25 25 H 1.48502 * 109.47214 * 329.99889 * 22 20 18 26 26 C 1.38899 * 120.01323 * 359.73396 * 16 15 14 27 27 C 1.38007 * 120.00519 * 359.97438 * 26 16 15 28 28 H 1.09002 * 109.47011 * 270.14470 * 1 2 3 29 29 H 1.08999 * 109.47586 * 30.14049 * 1 2 3 30 30 H 1.09000 * 109.47230 * 150.14659 * 1 2 3 31 31 H 1.07993 * 120.34371 * 359.96171 * 5 4 3 32 32 H 1.07997 * 120.15735 * 179.97438 * 6 5 4 33 33 H 1.07993 * 119.85772 * 180.02562 * 7 6 5 34 34 H 1.08007 * 119.69511 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.46773 * 149.69611 * 11 10 2 36 36 H 1.08998 * 109.46848 * 29.69412 * 11 10 2 37 37 H 0.96997 * 120.00192 * 359.97438 * 12 11 10 38 38 H 1.07995 * 120.00128 * 359.97438 * 14 13 12 39 39 H 1.08006 * 119.99635 * 180.25574 * 15 14 13 40 40 H 0.97004 * 120.00022 * 179.97438 * 21 20 18 41 41 H 1.07998 * 119.99545 * 179.97438 * 26 16 15 42 42 H 1.07999 * 120.00518 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0844 0.0000 4 6 3.5567 0.7073 -0.0068 5 6 4.7628 1.4363 -0.0143 6 6 5.9464 0.7659 -0.0197 7 6 5.9505 -0.6388 -0.0184 8 6 4.7873 -1.3230 -0.0112 9 7 3.5927 -0.6629 -0.0057 10 6 2.2951 -1.0973 0.0026 11 6 1.8319 -2.5314 0.0071 12 7 1.6897 -2.9943 1.3898 13 6 1.2693 -4.3019 1.6493 14 6 0.9807 -5.1609 0.5959 15 6 0.5710 -6.4537 0.8524 16 6 0.4363 -6.8925 2.1634 17 8 0.0274 -8.1627 2.4155 18 6 0.0269 -8.5613 3.7033 19 1 0.2638 -7.8566 4.4867 20 6 -0.2775 -9.8755 4.0219 21 7 -0.2775 -10.2646 5.2789 22 14 -0.6879 -11.0940 2.6669 23 1 0.5576 -11.7562 2.2029 24 1 -1.6275 -12.1181 3.1900 25 1 -1.3200 -10.3766 1.5307 26 6 0.7192 -6.0321 3.2165 27 6 1.1347 -4.7412 2.9606 28 1 -0.3633 0.0026 1.0277 29 1 -0.3634 0.8887 -0.5160 30 1 -0.3634 -0.8913 -0.5115 31 1 4.7476 2.5161 -0.0158 32 1 6.8786 1.3111 -0.0259 33 1 6.8887 -1.1737 -0.0223 34 1 4.8018 -2.4030 -0.0099 35 1 2.5641 -3.1513 -0.5101 36 1 0.8704 -2.6041 -0.5010 37 1 1.8881 -2.3937 2.1252 38 1 1.0808 -4.8183 -0.4233 39 1 0.3507 -7.1227 0.0337 40 1 -0.4910 -11.1842 5.5019 41 1 0.6140 -6.3735 4.2357 42 1 1.3543 -4.0722 3.7795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315843148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:29 Heat of formation + Delta-G solvation = 95.843337 kcal Electronic energy + Delta-G solvation = -25360.596423 eV Core-core repulsion = 21693.833828 eV Total energy + Delta-G solvation = -3666.762595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.16960 -39.20785 -37.97074 -37.26119 -34.93042 -33.77489 -32.30870 -31.94332 -30.42166 -29.91708 -28.50015 -27.23387 -25.86278 -24.55624 -23.23416 -22.71778 -21.94946 -20.78087 -20.48351 -17.99516 -17.60399 -17.38351 -17.16663 -16.55171 -16.26222 -15.88485 -15.25074 -15.19147 -14.37191 -14.10221 -14.01326 -13.66911 -13.57291 -13.46844 -13.26616 -13.16762 -12.91467 -12.73304 -12.32084 -12.25396 -12.12595 -11.94088 -11.76087 -11.61195 -11.54895 -11.27884 -10.85871 -10.64909 -10.31273 -10.12034 -9.33543 -9.27950 -8.96022 -8.58608 -8.29488 -8.12504 -6.57079 -6.32692 -3.97432 0.41011 0.87694 2.07413 2.23232 2.41938 2.43519 3.20189 3.26585 3.29986 3.45215 3.81552 3.87170 4.11490 4.29884 4.30622 4.48543 4.55124 4.66301 4.72746 4.91586 4.98958 5.04067 5.16878 5.18914 5.32557 5.51772 5.53095 5.54236 5.57086 5.60719 5.73753 5.76494 5.88334 6.07840 6.11989 6.15363 6.36628 6.38794 6.73639 6.73684 6.76572 6.95198 7.30792 7.43328 7.58545 7.72863 7.87756 8.03362 8.16035 9.03731 9.69184 10.75787 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.002287 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.470680 B =12239.568037 C =12662.306111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.084 3.916 3 N -0.494 5.494 4 C 0.228 3.772 5 C -0.084 4.084 6 C -0.098 4.098 7 C -0.147 4.147 8 C 0.064 3.936 9 N -0.352 5.352 10 C -0.084 4.084 11 C 0.218 3.782 12 N -0.756 5.756 13 C 0.131 3.869 14 C -0.149 4.149 15 C -0.149 4.149 16 C 0.118 3.882 17 O -0.227 6.227 18 C -0.385 4.385 19 H 0.103 0.897 20 C 0.060 3.940 21 N -0.887 5.887 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.260 1.260 26 C -0.175 4.175 27 C -0.141 4.141 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.392 0.608 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.277 0.723 41 H 0.134 0.866 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.555 21.274 -12.362 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 N -0.215 5.215 4 C -0.015 4.015 5 C -0.105 4.105 6 C -0.122 4.122 7 C -0.168 4.168 8 C -0.058 4.058 9 N -0.024 5.024 10 C -0.197 4.197 11 C 0.092 3.908 12 N -0.393 5.393 13 C 0.033 3.967 14 C -0.172 4.172 15 C -0.169 4.169 16 C 0.067 3.933 17 O -0.133 6.133 18 C -0.461 4.461 19 H 0.121 0.879 20 C -0.142 4.142 21 N -0.526 5.526 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.184 1.184 26 C -0.195 4.195 27 C -0.163 4.163 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.226 0.774 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.087 0.913 41 H 0.151 0.849 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.091 21.624 -12.561 26.967 hybrid contribution 0.405 -1.158 0.038 1.227 sum 10.497 20.466 -12.523 26.189 Atomic orbital electron populations 1.20215 0.86543 1.03266 1.03222 1.20782 0.96813 0.87221 1.00137 1.70698 0.98135 1.29186 1.23441 1.20931 0.94622 0.80240 1.05730 1.20270 0.87823 1.00594 1.01771 1.21064 0.98241 0.93985 0.98932 1.20834 0.97364 0.94756 1.03837 1.21716 0.83022 0.99281 1.01829 1.42677 1.05654 1.08787 1.45257 1.20959 0.81200 0.97671 1.19839 1.19265 1.00162 0.85612 0.85723 1.44330 1.78669 1.11204 1.05054 1.17415 1.01242 0.84710 0.93349 1.20135 1.06785 0.93465 0.96770 1.20006 1.06709 0.95915 0.94286 1.18972 0.95783 0.85605 0.92918 1.83576 1.75601 1.24433 1.29718 1.20700 1.48432 0.96768 0.80170 0.87941 1.24430 0.96350 0.96652 0.96805 1.69665 1.47865 1.18646 1.16446 0.86181 0.78706 0.80061 0.81913 1.20084 1.20987 1.18440 1.21113 1.04901 0.93380 1.00081 1.20283 1.05740 0.96315 0.93930 0.90392 0.90649 0.90471 0.83220 0.83979 0.83114 0.81902 0.92527 0.90301 0.77401 0.87054 0.86506 0.91283 0.84853 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.21 36.00 0.37 -0.34 16 2 C 0.08 1.01 7.06 -82.98 -0.59 0.42 16 3 N -0.49 -6.55 11.32 -9.01 -0.10 -6.65 16 4 C 0.23 2.65 7.81 -156.05 -1.22 1.43 16 5 C -0.08 -0.71 10.11 -39.36 -0.40 -1.10 16 6 C -0.10 -0.60 10.07 -39.54 -0.40 -1.00 16 7 C -0.15 -0.92 9.99 -39.91 -0.40 -1.32 16 8 C 0.06 0.54 10.85 -16.64 -0.18 0.35 16 9 N -0.35 -3.81 2.94 -58.46 -0.17 -3.98 16 10 C -0.08 -0.95 6.40 -81.47 -0.52 -1.48 16 11 C 0.22 2.36 5.12 -5.19 -0.03 2.33 16 12 N -0.76 -9.59 5.73 -59.75 -0.34 -9.93 16 13 C 0.13 2.08 6.66 -83.71 -0.56 1.53 16 14 C -0.15 -2.43 9.31 -39.40 -0.37 -2.80 16 15 C -0.15 -2.89 9.98 -39.42 -0.39 -3.28 16 16 C 0.12 2.71 6.65 -39.09 -0.26 2.45 16 17 O -0.23 -6.01 8.58 -0.06 0.00 -6.01 16 18 C -0.38 -10.92 9.94 30.87 0.31 -10.61 16 19 H 0.10 2.97 5.43 -52.49 -0.28 2.68 16 20 C 0.06 1.69 5.49 -17.52 -0.10 1.59 16 21 N -0.89 -25.96 13.96 55.48 0.77 -25.19 16 22 Si 0.91 21.94 28.62 -169.99 -4.86 17.08 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.18 -3.73 9.16 -39.42 -0.36 -4.09 16 27 C -0.14 -2.50 9.89 -39.40 -0.39 -2.89 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.64 7.12 -51.93 -0.37 0.27 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 33 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 34 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.06 0.59 7.96 -51.93 -0.41 0.18 16 36 H 0.08 0.81 6.92 -51.93 -0.36 0.45 16 37 H 0.39 4.87 8.48 -40.82 -0.35 4.52 16 38 H 0.11 1.50 6.73 -52.49 -0.35 1.15 16 39 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 40 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.13 3.01 5.63 -52.49 -0.30 2.71 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -32.68 358.36 -9.72 -42.40 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.94 Total: 5.69 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -5.48 Total: -18.81 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.16 Total: -45.75 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: 0.00 Total: -6.01 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.86 Total: 17.08 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.68 -9.72 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315843148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.241 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds