Wall clock time and date at job start Tue Mar 31 2020 15:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33515 * 125.68831 * 2 1 4 4 C 1.32560 * 109.15989 * 180.31018 * 3 2 1 5 5 C 1.40935 * 132.32344 * 179.75399 * 4 3 2 6 6 C 1.36024 * 119.32464 * 179.97438 * 5 4 3 7 7 C 1.40473 * 119.69461 * 0.02562 * 6 5 4 8 8 C 1.34955 * 120.29791 * 359.97438 * 7 6 5 9 9 N 1.36490 * 120.61142 * 0.02562 * 8 7 6 10 10 C 1.35103 * 125.68856 * 179.86216 * 2 1 3 11 11 C 1.50703 * 126.40952 * 359.95007 * 10 2 1 12 12 N 1.46504 * 109.47206 * 269.69593 * 11 10 2 13 13 C 1.39782 * 119.99703 * 180.02562 * 12 11 10 14 14 C 1.38949 * 120.00671 * 359.72819 * 13 12 11 15 15 C 1.38012 * 119.99050 * 179.72628 * 14 13 12 16 16 C 1.38898 * 120.00551 * 0.54247 * 15 14 13 17 17 O 1.35803 * 119.99392 * 179.70483 * 16 15 14 18 18 C 1.34812 * 117.00123 * 174.48490 * 17 16 15 19 19 H 1.07998 * 119.99716 * 5.05712 * 18 17 16 20 20 C 1.38612 * 119.99865 * 185.05868 * 18 17 16 21 21 N 1.31584 * 119.99801 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00179 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47124 * 90.00205 * 22 20 18 24 24 H 1.48499 * 109.47179 * 209.99928 * 22 20 18 25 25 H 1.48502 * 109.47214 * 329.99889 * 22 20 18 26 26 C 1.38899 * 120.01323 * 359.73396 * 16 15 14 27 27 C 1.38007 * 120.00519 * 359.97438 * 26 16 15 28 28 H 1.09002 * 109.47011 * 270.14470 * 1 2 3 29 29 H 1.08999 * 109.47586 * 30.14049 * 1 2 3 30 30 H 1.09000 * 109.47230 * 150.14659 * 1 2 3 31 31 H 1.07993 * 120.34371 * 359.96171 * 5 4 3 32 32 H 1.07997 * 120.15735 * 179.97438 * 6 5 4 33 33 H 1.07993 * 119.85772 * 180.02562 * 7 6 5 34 34 H 1.08007 * 119.69511 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.46773 * 149.69611 * 11 10 2 36 36 H 1.08998 * 109.46848 * 29.69412 * 11 10 2 37 37 H 0.96997 * 120.00192 * 359.97438 * 12 11 10 38 38 H 1.07995 * 120.00128 * 359.97438 * 14 13 12 39 39 H 1.08006 * 119.99635 * 180.25574 * 15 14 13 40 40 H 0.97004 * 120.00022 * 179.97438 * 21 20 18 41 41 H 1.07998 * 119.99545 * 179.97438 * 26 16 15 42 42 H 1.07999 * 120.00518 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0844 0.0000 4 6 3.5567 0.7073 -0.0068 5 6 4.7628 1.4363 -0.0143 6 6 5.9464 0.7659 -0.0197 7 6 5.9505 -0.6388 -0.0184 8 6 4.7873 -1.3230 -0.0112 9 7 3.5927 -0.6629 -0.0057 10 6 2.2951 -1.0973 0.0026 11 6 1.8319 -2.5314 0.0071 12 7 1.6897 -2.9943 1.3898 13 6 1.2693 -4.3019 1.6493 14 6 0.9807 -5.1609 0.5959 15 6 0.5710 -6.4537 0.8524 16 6 0.4363 -6.8925 2.1634 17 8 0.0274 -8.1627 2.4155 18 6 0.0269 -8.5613 3.7033 19 1 0.2638 -7.8566 4.4867 20 6 -0.2775 -9.8755 4.0219 21 7 -0.2775 -10.2646 5.2789 22 14 -0.6879 -11.0940 2.6669 23 1 0.5576 -11.7562 2.2029 24 1 -1.6275 -12.1181 3.1900 25 1 -1.3200 -10.3766 1.5307 26 6 0.7192 -6.0321 3.2165 27 6 1.1347 -4.7412 2.9606 28 1 -0.3633 0.0026 1.0277 29 1 -0.3634 0.8887 -0.5160 30 1 -0.3634 -0.8913 -0.5115 31 1 4.7476 2.5161 -0.0158 32 1 6.8786 1.3111 -0.0259 33 1 6.8887 -1.1737 -0.0223 34 1 4.8018 -2.4030 -0.0099 35 1 2.5641 -3.1513 -0.5101 36 1 0.8704 -2.6041 -0.5010 37 1 1.8881 -2.3937 2.1252 38 1 1.0808 -4.8183 -0.4233 39 1 0.3507 -7.1227 0.0337 40 1 -0.4910 -11.1842 5.5019 41 1 0.6140 -6.3735 4.2357 42 1 1.3543 -4.0722 3.7795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315843148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:28 Heat of formation + Delta-G solvation = 76.901248 kcal Electronic energy + Delta-G solvation = -25361.417813 eV Core-core repulsion = 21693.833828 eV Total energy + Delta-G solvation = -3667.583986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.89722 -40.80776 -38.97407 -38.46144 -36.13584 -34.60110 -34.26396 -32.80792 -31.86386 -30.83698 -29.47580 -28.36458 -27.21830 -26.02023 -23.99785 -23.79121 -23.02507 -22.20340 -21.36933 -19.68500 -19.10332 -18.58920 -17.90812 -17.65922 -17.16159 -16.69281 -16.44662 -15.93801 -15.86828 -15.56482 -15.49858 -15.23283 -14.80114 -14.37551 -14.30692 -14.18395 -14.00146 -13.92925 -13.79688 -13.53119 -13.12765 -13.07127 -12.94162 -12.60842 -12.54474 -12.42215 -12.36575 -11.96099 -11.91403 -11.20733 -11.15305 -10.97469 -10.32220 -9.79759 -9.66964 -8.84367 -8.42656 -8.02030 -6.10686 -0.18188 0.19487 0.56621 0.87913 1.34517 1.39025 1.54520 1.55868 1.66997 2.33570 2.54074 2.74202 2.85258 3.17216 3.17911 3.30638 3.45505 3.63905 3.91742 3.99921 4.10397 4.13163 4.15843 4.21466 4.42348 4.49337 4.56499 4.61460 4.64730 4.79302 4.90770 4.93427 4.95938 5.08616 5.16288 5.20904 5.22941 5.26037 5.47588 5.56300 5.61641 5.63324 5.82920 5.86959 6.07333 6.13993 6.53836 6.80754 6.86680 6.93183 7.73243 8.69712 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.002287 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.470680 B =12239.568037 C =12662.306111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.069 3.931 3 N -0.535 5.535 4 C 0.211 3.789 5 C -0.109 4.109 6 C -0.079 4.079 7 C -0.135 4.135 8 C 0.039 3.961 9 N -0.355 5.355 10 C -0.098 4.098 11 C 0.220 3.780 12 N -0.743 5.743 13 C 0.163 3.837 14 C -0.143 4.143 15 C -0.140 4.140 16 C 0.068 3.932 17 O -0.254 6.254 18 C -0.390 4.390 19 H 0.077 0.923 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.271 1.271 25 H -0.262 1.262 26 C -0.187 4.187 27 C -0.150 4.150 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.179 0.821 33 H 0.185 0.815 34 H 0.176 0.824 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.396 0.604 38 H 0.152 0.848 39 H 0.131 0.869 40 H 0.282 0.718 41 H 0.106 0.894 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.622 22.814 -15.117 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 N -0.257 5.257 4 C -0.032 4.032 5 C -0.129 4.129 6 C -0.103 4.103 7 C -0.155 4.155 8 C -0.083 4.083 9 N -0.026 5.026 10 C -0.211 4.211 11 C 0.095 3.905 12 N -0.377 5.377 13 C 0.063 3.937 14 C -0.165 4.165 15 C -0.159 4.159 16 C 0.019 3.981 17 O -0.162 6.162 18 C -0.467 4.467 19 H 0.095 0.905 20 C -0.194 4.194 21 N -0.574 5.574 22 Si 0.795 3.205 23 H -0.192 1.192 24 H -0.196 1.196 25 H -0.186 1.186 26 C -0.207 4.207 27 C -0.172 4.172 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.179 0.821 32 H 0.196 0.804 33 H 0.202 0.798 34 H 0.193 0.807 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.231 0.769 38 H 0.170 0.830 39 H 0.149 0.851 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.189 23.235 -15.343 30.395 hybrid contribution 0.029 -1.189 0.784 1.424 sum 12.217 22.046 -14.559 29.108 Atomic orbital electron populations 1.20256 0.85517 1.03945 1.03332 1.21164 0.97746 0.87389 1.00211 1.70657 0.99303 1.30253 1.25504 1.21450 0.95087 0.81067 1.05586 1.20607 0.87614 1.01430 1.03234 1.21555 0.98798 0.94202 0.95736 1.21362 0.97995 0.95032 1.01115 1.22197 0.82867 1.00200 1.03049 1.42792 1.06162 1.08668 1.45020 1.20896 0.81592 0.97455 1.21117 1.19390 1.01222 0.85640 0.84201 1.44437 1.76986 1.09723 1.06567 1.17477 0.98016 0.85766 0.92489 1.20492 1.05225 0.92035 0.98740 1.20308 1.05316 0.97294 0.93010 1.19482 0.98800 0.84921 0.94852 1.83504 1.78233 1.26530 1.27980 1.20659 1.48284 0.96784 0.80969 0.90549 1.25271 0.96561 0.98409 0.99167 1.69758 1.50004 1.19393 1.18244 0.85185 0.78861 0.77705 0.78755 1.19186 1.19577 1.18621 1.21039 1.05976 0.94980 0.98661 1.20408 1.05855 0.95179 0.95760 0.90472 0.90543 0.89237 0.82081 0.80363 0.79758 0.80691 0.91138 0.89021 0.76935 0.83019 0.85122 0.90879 0.87650 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.21 71.24 0.73 -0.57 16 2 C 0.07 1.57 7.06 41.58 0.29 1.87 16 3 N -0.54 -13.99 11.32 -182.41 -2.06 -16.05 16 4 C 0.21 4.65 7.81 134.11 1.05 5.70 16 5 C -0.11 -1.59 10.11 22.42 0.23 -1.36 16 6 C -0.08 -0.66 10.07 22.30 0.22 -0.44 16 7 C -0.13 -1.13 9.99 22.06 0.22 -0.91 16 8 C 0.04 0.53 10.85 83.21 0.90 1.43 16 9 N -0.36 -6.94 2.94 -338.87 -1.00 -7.94 16 10 C -0.10 -2.02 6.40 41.06 0.26 -1.76 16 11 C 0.22 3.97 5.12 85.63 0.44 4.41 16 12 N -0.74 -16.39 5.73 -342.96 -1.96 -18.36 16 13 C 0.16 4.73 6.66 38.21 0.25 4.99 16 14 C -0.14 -4.15 9.31 22.39 0.21 -3.94 16 15 C -0.14 -5.18 9.98 22.37 0.22 -4.95 16 16 C 0.07 3.17 6.65 22.59 0.15 3.32 16 17 O -0.25 -13.92 8.58 -23.14 -0.20 -14.12 16 18 C -0.39 -23.38 9.94 67.91 0.68 -22.70 16 19 H 0.08 4.81 5.43 -2.91 -0.02 4.79 16 20 C 0.00 0.16 5.49 84.82 0.47 0.63 16 21 N -0.93 -56.84 13.96 21.61 0.30 -56.54 16 22 Si 0.97 46.25 28.62 68.60 1.96 48.22 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 26 C -0.19 -8.25 9.16 22.37 0.20 -8.05 16 27 C -0.15 -5.18 9.89 22.39 0.22 -4.96 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.30 7.12 -2.39 -0.02 1.29 16 31 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.18 0.19 8.06 -2.91 -0.02 0.16 16 33 H 0.19 0.29 8.06 -2.91 -0.02 0.26 16 34 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.07 1.14 7.96 -2.39 -0.02 1.12 16 36 H 0.09 1.49 6.92 -2.39 -0.02 1.48 16 37 H 0.40 8.71 8.48 -92.71 -0.79 7.92 16 38 H 0.15 3.25 6.73 -2.91 -0.02 3.23 16 39 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 40 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.11 5.18 5.63 -2.91 -0.02 5.16 16 42 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -75.83 358.36 4.07 -71.77 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.28 Total: 20.34 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 6.75 Total: -27.31 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -4.73 Total: -98.89 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.20 Total: -14.12 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.96 Total: 48.22 kcal Total: -75.83 4.07 -71.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315843148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.667 kcal (2) G-P(sol) polarization free energy of solvation -75.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds