Wall clock time and date at job start Tue Mar 31 2020 14:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99872 * 2 1 4 4 H 1.48491 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47009 * 300.00607 * 3 2 1 6 6 H 1.48509 * 109.46818 * 60.00257 * 3 2 1 7 7 C 1.37875 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.30103 * 119.99625 * 115.44161 * 10 9 7 12 12 O 1.35093 * 119.99502 * 185.31380 * 11 10 9 13 13 N 1.37331 * 120.00194 * 5.31794 * 11 10 9 14 14 C 1.46933 * 120.62942 * 264.86312 * 13 11 10 15 15 C 1.52763 * 109.00804 * 233.58027 * 14 13 11 16 16 C 1.53037 * 109.38567 * 305.59362 * 15 14 13 17 17 C 1.53036 * 109.54081 * 61.23316 * 16 15 14 18 18 H 1.09003 * 109.49436 * 58.59174 * 17 16 15 19 19 O 1.42908 * 109.52206 * 178.66772 * 17 16 15 20 20 C 1.35732 * 116.99778 * 209.85743 * 19 17 16 21 21 N 1.32222 * 119.69850 * 0.02562 * 20 19 17 22 22 C 1.31962 * 121.67303 * 179.97438 * 21 20 19 23 23 C 1.38062 * 120.87922 * 359.97438 * 22 21 20 24 24 C 1.38798 * 119.30729 * 0.02562 * 23 22 21 25 25 C 1.38580 * 118.46216 * 359.74495 * 24 23 22 26 26 F 1.35095 * 120.46303 * 180.24073 * 25 24 23 27 27 C 1.46932 * 120.63274 * 85.14089 * 13 11 10 28 28 H 0.97000 * 120.00107 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47393 * 59.99529 * 9 7 2 30 30 H 1.08999 * 109.47071 * 299.99754 * 9 7 2 31 31 H 0.96697 * 114.00361 * 0.02562 * 12 11 10 32 32 H 1.08993 * 109.58508 * 353.42160 * 14 13 11 33 33 H 1.09007 * 109.58422 * 113.84227 * 14 13 11 34 34 H 1.08991 * 109.56580 * 185.55049 * 15 14 13 35 35 H 1.09005 * 109.35507 * 65.50283 * 15 14 13 36 36 H 1.09006 * 109.45713 * 301.21725 * 16 15 14 37 37 H 1.08996 * 109.46000 * 181.26166 * 16 15 14 38 38 H 1.08002 * 119.55985 * 179.97438 * 22 21 20 39 39 H 1.07993 * 120.34688 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.76806 * 180.02562 * 24 23 22 41 41 H 1.08995 * 109.58471 * 246.15610 * 27 13 11 42 42 H 1.08993 * 109.58555 * 6.43891 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2032 -3.6127 -0.0027 11 6 2.2580 -4.4225 1.0141 12 8 3.2067 -5.3831 1.0620 13 7 1.3515 -4.3009 2.0385 14 6 1.6818 -3.5259 3.2423 15 6 1.4551 -4.4000 4.4745 16 6 0.0267 -4.9489 4.4521 17 6 -0.1708 -5.8109 3.2032 18 1 0.5527 -6.6262 3.2057 19 8 -1.4950 -6.3484 3.1985 20 6 -1.6701 -7.5500 2.5918 21 7 -0.6356 -8.1633 2.0422 22 6 -0.7614 -9.3323 1.4431 23 6 -1.9877 -9.9621 1.3686 24 6 -3.0998 -9.3526 1.9328 25 6 -2.9350 -8.1275 2.5593 26 9 -3.9889 -7.5008 3.1261 27 6 0.0352 -4.9482 1.9542 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5564 -0.8919 30 1 0.6242 -2.5575 0.8880 31 1 3.7982 -5.3903 0.2971 32 1 2.7261 -3.2165 3.2025 33 1 1.0400 -2.6466 3.2984 34 1 1.6023 -3.8053 5.3760 35 1 2.1634 -5.2285 4.4650 36 1 -0.6807 -4.1197 4.4366 37 1 -0.1435 -5.5546 5.3421 38 1 0.1066 -9.8026 1.0051 39 1 -2.0807 -10.9189 0.8766 40 1 -4.0703 -9.8244 1.8886 41 1 -0.7436 -4.1873 1.9031 42 1 -0.0074 -5.5750 1.0635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331164028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:35 Heat of formation + Delta-G solvation = -45.268585 kcal Electronic energy + Delta-G solvation = -27702.377032 eV Core-core repulsion = 23598.726141 eV Total energy + Delta-G solvation = -4103.650892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.00872 -40.80462 -39.25740 -38.09032 -36.45968 -34.25926 -32.61780 -32.51807 -31.12317 -30.94627 -29.57371 -27.06813 -24.63254 -24.53748 -23.58293 -22.65358 -22.42030 -20.71071 -19.21911 -18.68826 -17.84552 -17.37473 -16.84711 -16.43601 -16.25979 -15.81096 -15.54736 -15.32166 -14.74415 -14.65768 -14.29696 -14.13849 -14.05102 -13.73072 -13.27843 -13.22538 -12.97827 -12.73161 -12.54033 -12.41906 -12.18237 -12.07796 -11.70451 -11.10592 -10.93052 -10.84380 -10.72079 -10.70794 -10.46349 -10.09021 -10.06862 -9.91433 -9.65664 -8.82095 -8.64706 -8.23345 -7.96686 -7.58632 -6.01771 -4.03841 0.68904 0.84595 2.64351 3.16765 3.30247 3.35153 3.37933 3.39029 3.44087 3.85821 4.08465 4.38590 4.45349 4.60190 4.77652 4.88527 4.91572 4.97413 5.13668 5.27250 5.32833 5.34023 5.44069 5.55353 5.63938 5.65632 5.81081 5.96817 5.98686 6.04700 6.07114 6.17777 6.27517 6.31228 6.52473 7.05949 7.40695 7.48593 7.54249 7.65972 7.84664 8.00102 8.27857 8.36816 8.97366 9.20229 9.60789 11.07971 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.003277 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.541669 B = 8541.801651 C = 8740.617055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.193 3.807 10 N -0.563 5.563 11 C 0.521 3.479 12 O -0.504 6.504 13 N -0.649 5.649 14 C 0.144 3.856 15 C -0.131 4.131 16 C -0.112 4.112 17 C 0.074 3.926 18 H 0.094 0.906 19 O -0.292 6.292 20 C 0.306 3.694 21 N -0.510 5.510 22 C 0.134 3.866 23 C -0.190 4.190 24 C -0.076 4.076 25 C 0.026 3.974 26 F -0.124 7.124 27 C 0.140 3.860 28 H 0.261 0.739 29 H 0.031 0.969 30 H 0.022 0.978 31 H 0.403 0.597 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.167 0.833 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.067 0.933 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 -20.187 7.858 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.067 3.933 10 N -0.299 5.299 11 C 0.206 3.794 12 O -0.297 6.297 13 N -0.389 5.389 14 C 0.019 3.981 15 C -0.170 4.170 16 C -0.150 4.150 17 C 0.017 3.983 18 H 0.112 0.888 19 O -0.197 6.197 20 C 0.125 3.875 21 N -0.233 5.233 22 C -0.022 4.022 23 C -0.210 4.210 24 C -0.102 4.102 25 C 0.003 3.997 26 F -0.103 7.103 27 C 0.014 3.986 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.257 0.743 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.184 0.816 39 H 0.164 0.836 40 H 0.170 0.830 41 H 0.085 0.915 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.770 -19.463 7.763 21.137 hybrid contribution -0.639 0.641 0.074 0.908 sum -3.409 -18.823 7.837 20.672 Atomic orbital electron populations 1.69970 1.05950 1.26646 1.50986 1.24959 0.94895 0.99134 0.95475 0.86435 0.80029 0.83367 0.77563 1.19761 1.20969 1.21002 1.21123 0.93329 0.89611 1.50191 0.92341 1.19601 0.90361 0.86060 0.97319 1.72317 1.28183 1.07359 1.22053 1.19895 0.86152 0.88041 0.85334 1.84699 1.43461 1.52832 1.48724 1.45848 1.12411 1.59888 1.20779 1.21259 1.01237 0.92927 0.82628 1.21930 0.95434 1.00385 0.99263 1.21573 0.98214 0.99452 0.95747 1.23037 0.81172 0.96636 0.97475 0.88758 1.86357 1.33583 1.29323 1.70470 1.19964 0.88786 0.87162 0.91629 1.67485 1.30909 1.11885 1.13023 1.22576 0.97641 0.88989 0.93007 1.21907 0.92696 1.02630 1.03762 1.21512 1.01168 0.92398 0.95154 1.17670 0.82975 0.94554 1.04459 1.91533 1.54256 1.81738 1.82734 1.21516 0.85538 0.95267 0.96241 0.92951 0.95100 0.96044 0.74252 0.90716 0.91535 0.90419 0.91531 0.90558 0.91472 0.81589 0.83604 0.83012 0.91488 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.50 -14.66 9.39 -34.44 -0.32 -14.98 16 8 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.19 5.28 6.07 -5.19 -0.03 5.25 16 10 N -0.56 -13.35 10.48 -63.71 -0.67 -14.02 16 11 C 0.52 10.53 7.33 -88.57 -0.65 9.88 16 12 O -0.50 -8.58 13.62 -16.98 -0.23 -8.81 16 13 N -0.65 -12.09 1.55 -175.63 -0.27 -12.36 16 14 C 0.14 2.41 6.30 -3.93 -0.02 2.38 16 15 C -0.13 -1.69 6.06 -26.83 -0.16 -1.86 16 16 C -0.11 -1.48 5.54 -26.69 -0.15 -1.62 16 17 C 0.07 1.10 2.53 -26.62 -0.07 1.04 16 18 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 19 O -0.29 -4.46 9.64 -18.90 -0.18 -4.64 16 20 C 0.31 4.25 7.46 -17.07 -0.13 4.12 16 21 N -0.51 -6.62 8.65 -13.27 -0.11 -6.73 16 22 C 0.13 1.24 11.17 -17.56 -0.20 1.05 16 23 C -0.19 -1.40 10.10 -39.44 -0.40 -1.80 16 24 C -0.08 -0.66 10.16 -39.25 -0.40 -1.06 16 25 C 0.03 0.32 7.35 -39.14 -0.29 0.03 16 26 F -0.12 -1.65 17.13 2.25 0.04 -1.61 16 27 C 0.14 2.45 5.75 -3.71 -0.02 2.43 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.02 0.60 6.08 -51.93 -0.32 0.29 16 31 H 0.40 5.45 8.97 45.56 0.41 5.85 16 32 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 42 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -33.88 360.99 -8.07 -41.95 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.86 Total: 3.54 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -2.93 Total: 6.39 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.32 Total: -59.15 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.41 Total: -13.45 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.88 -8.07 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331164028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.321 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds