Wall clock time and date at job start Tue Mar 31 2020 14:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99872 * 2 1 4 4 H 1.48491 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47009 * 300.00607 * 3 2 1 6 6 H 1.48509 * 109.46818 * 60.00257 * 3 2 1 7 7 C 1.37875 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.30103 * 119.99625 * 115.44161 * 10 9 7 12 12 O 1.35093 * 119.99502 * 185.31380 * 11 10 9 13 13 N 1.37331 * 120.00194 * 5.31794 * 11 10 9 14 14 C 1.46933 * 120.62942 * 264.86312 * 13 11 10 15 15 C 1.52763 * 109.00804 * 233.58027 * 14 13 11 16 16 C 1.53037 * 109.38567 * 305.59362 * 15 14 13 17 17 C 1.53036 * 109.54081 * 61.23316 * 16 15 14 18 18 H 1.09003 * 109.49436 * 58.59174 * 17 16 15 19 19 O 1.42908 * 109.52206 * 178.66772 * 17 16 15 20 20 C 1.35732 * 116.99778 * 209.85743 * 19 17 16 21 21 N 1.32222 * 119.69850 * 0.02562 * 20 19 17 22 22 C 1.31962 * 121.67303 * 179.97438 * 21 20 19 23 23 C 1.38062 * 120.87922 * 359.97438 * 22 21 20 24 24 C 1.38798 * 119.30729 * 0.02562 * 23 22 21 25 25 C 1.38580 * 118.46216 * 359.74495 * 24 23 22 26 26 F 1.35095 * 120.46303 * 180.24073 * 25 24 23 27 27 C 1.46932 * 120.63274 * 85.14089 * 13 11 10 28 28 H 0.97000 * 120.00107 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47393 * 59.99529 * 9 7 2 30 30 H 1.08999 * 109.47071 * 299.99754 * 9 7 2 31 31 H 0.96697 * 114.00361 * 0.02562 * 12 11 10 32 32 H 1.08993 * 109.58508 * 353.42160 * 14 13 11 33 33 H 1.09007 * 109.58422 * 113.84227 * 14 13 11 34 34 H 1.08991 * 109.56580 * 185.55049 * 15 14 13 35 35 H 1.09005 * 109.35507 * 65.50283 * 15 14 13 36 36 H 1.09006 * 109.45713 * 301.21725 * 16 15 14 37 37 H 1.08996 * 109.46000 * 181.26166 * 16 15 14 38 38 H 1.08002 * 119.55985 * 179.97438 * 22 21 20 39 39 H 1.07993 * 120.34688 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.76806 * 180.02562 * 24 23 22 41 41 H 1.08995 * 109.58471 * 246.15610 * 27 13 11 42 42 H 1.08993 * 109.58555 * 6.43891 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2032 -3.6127 -0.0027 11 6 2.2580 -4.4225 1.0141 12 8 3.2067 -5.3831 1.0620 13 7 1.3515 -4.3009 2.0385 14 6 1.6818 -3.5259 3.2423 15 6 1.4551 -4.4000 4.4745 16 6 0.0267 -4.9489 4.4521 17 6 -0.1708 -5.8109 3.2032 18 1 0.5527 -6.6262 3.2057 19 8 -1.4950 -6.3484 3.1985 20 6 -1.6701 -7.5500 2.5918 21 7 -0.6356 -8.1633 2.0422 22 6 -0.7614 -9.3323 1.4431 23 6 -1.9877 -9.9621 1.3686 24 6 -3.0998 -9.3526 1.9328 25 6 -2.9350 -8.1275 2.5593 26 9 -3.9889 -7.5008 3.1261 27 6 0.0352 -4.9482 1.9542 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5564 -0.8919 30 1 0.6242 -2.5575 0.8880 31 1 3.7982 -5.3903 0.2971 32 1 2.7261 -3.2165 3.2025 33 1 1.0400 -2.6466 3.2984 34 1 1.6023 -3.8053 5.3760 35 1 2.1634 -5.2285 4.4650 36 1 -0.6807 -4.1197 4.4366 37 1 -0.1435 -5.5546 5.3421 38 1 0.1066 -9.8026 1.0051 39 1 -2.0807 -10.9189 0.8766 40 1 -4.0703 -9.8244 1.8886 41 1 -0.7436 -4.1873 1.9031 42 1 -0.0074 -5.5750 1.0635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331164028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:34 Heat of formation + Delta-G solvation = -72.155078 kcal Electronic energy + Delta-G solvation = -27703.542918 eV Core-core repulsion = 23598.726141 eV Total energy + Delta-G solvation = -4104.816778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.94611 -41.75277 -40.57270 -39.33484 -37.76769 -36.07298 -34.48863 -33.35791 -32.70588 -32.04936 -30.61293 -29.13014 -26.16708 -25.51414 -24.63402 -24.36318 -23.54888 -22.15167 -20.61055 -19.69591 -18.86815 -18.52776 -18.22286 -18.14342 -17.67382 -17.40738 -16.62608 -16.30497 -16.28416 -15.98545 -15.69689 -15.51866 -14.99003 -14.90529 -14.64678 -14.30540 -14.23044 -14.05897 -13.89105 -13.84200 -13.74730 -13.34117 -13.17802 -12.87169 -12.67038 -12.28197 -12.21286 -12.05310 -11.92650 -11.75364 -11.59909 -10.90170 -10.85399 -10.75395 -10.30401 -9.86439 -9.55114 -9.07685 -8.22703 -6.35294 -0.10248 0.08288 1.34576 1.38546 1.42047 1.53099 1.62980 2.01777 2.39520 2.57371 2.97180 3.08138 3.28522 3.34430 3.63106 3.68813 3.73476 3.91919 3.95698 4.04941 4.12051 4.26508 4.32983 4.46198 4.58597 4.67512 4.75910 4.78850 4.88439 4.92862 4.97015 4.98989 5.00899 5.21706 5.29222 5.31781 5.44697 5.66100 6.01467 6.08346 6.21102 6.32641 6.63323 6.68547 6.82006 7.28212 7.49044 8.87121 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.003277 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.541669 B = 8541.801651 C = 8740.617055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.051 0.949 9 C 0.214 3.786 10 N -0.600 5.600 11 C 0.548 3.452 12 O -0.487 6.487 13 N -0.661 5.661 14 C 0.141 3.859 15 C -0.115 4.115 16 C -0.109 4.109 17 C 0.090 3.910 18 H 0.094 0.906 19 O -0.311 6.311 20 C 0.270 3.730 21 N -0.536 5.536 22 C 0.123 3.877 23 C -0.166 4.166 24 C -0.067 4.067 25 C 0.001 3.999 26 F -0.138 7.138 27 C 0.148 3.852 28 H 0.266 0.734 29 H -0.009 1.009 30 H 0.006 0.994 31 H 0.421 0.579 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.195 0.805 39 H 0.191 0.809 40 H 0.185 0.815 41 H 0.039 0.961 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 -22.099 8.642 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.087 3.913 10 N -0.338 5.338 11 C 0.234 3.766 12 O -0.282 6.282 13 N -0.402 5.402 14 C 0.017 3.983 15 C -0.153 4.153 16 C -0.147 4.147 17 C 0.032 3.968 18 H 0.112 0.888 19 O -0.217 6.217 20 C 0.091 3.909 21 N -0.260 5.260 22 C -0.032 4.032 23 C -0.185 4.185 24 C -0.093 4.093 25 C -0.022 4.022 26 F -0.117 7.117 27 C 0.023 3.977 28 H 0.075 0.925 29 H 0.009 0.991 30 H 0.023 0.977 31 H 0.278 0.722 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.212 0.788 39 H 0.209 0.791 40 H 0.202 0.798 41 H 0.057 0.943 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.861 -21.421 8.557 23.142 hybrid contribution -0.923 1.001 -0.244 1.383 sum -2.784 -20.420 8.313 22.223 Atomic orbital electron populations 1.70095 1.07631 1.27957 1.51204 1.25892 0.95800 1.02995 0.94476 0.85292 0.78695 0.78292 0.78060 1.19094 1.20187 1.19769 1.21363 0.93099 0.90959 1.51047 0.93023 1.19116 0.90253 0.87357 0.94607 1.72218 1.28902 1.08233 1.24402 1.19951 0.85459 0.86722 0.84459 1.84714 1.42797 1.51014 1.49671 1.45961 1.12580 1.60564 1.21100 1.21337 1.00365 0.92954 0.83620 1.21820 0.95327 1.00131 0.98068 1.21592 0.98153 0.99159 0.95797 1.22764 0.81573 0.96048 0.96387 0.88840 1.86324 1.33349 1.30708 1.71359 1.20204 0.89954 0.87297 0.93443 1.67442 1.31098 1.13532 1.13883 1.23243 0.99759 0.88016 0.92200 1.22405 0.91135 1.03459 1.01531 1.21984 1.03183 0.90737 0.93382 1.18071 0.82172 0.96020 1.05898 1.91487 1.54696 1.82307 1.83235 1.21377 0.84221 0.94551 0.97570 0.92513 0.99134 0.97657 0.72167 0.91040 0.93903 0.87545 0.90602 0.91548 0.89133 0.78790 0.79144 0.79777 0.94284 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.53 -31.64 9.39 25.60 0.24 -31.40 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.21 12.39 6.07 85.63 0.52 12.91 16 10 N -0.60 -29.46 10.48 -469.72 -4.92 -34.38 16 11 C 0.55 22.55 7.33 179.63 1.32 23.87 16 12 O -0.49 -16.03 13.62 -83.68 -1.14 -17.17 16 13 N -0.66 -25.45 1.55 -820.03 -1.27 -26.72 16 14 C 0.14 4.79 6.30 86.22 0.54 5.33 16 15 C -0.11 -2.82 6.06 30.53 0.19 -2.63 16 16 C -0.11 -2.84 5.54 30.62 0.17 -2.67 16 17 C 0.09 2.74 2.53 30.67 0.08 2.82 16 18 H 0.09 2.86 6.99 -2.39 -0.02 2.84 16 19 O -0.31 -9.92 9.64 -90.56 -0.87 -10.80 16 20 C 0.27 7.68 7.46 84.84 0.63 8.31 16 21 N -0.54 -13.70 8.65 -308.76 -2.67 -16.37 16 22 C 0.12 2.01 11.17 84.63 0.95 2.96 16 23 C -0.17 -1.84 10.10 22.36 0.23 -1.62 16 24 C -0.07 -0.99 10.16 22.49 0.23 -0.76 16 25 C 0.00 0.01 7.35 22.56 0.17 0.18 16 26 F -0.14 -3.79 17.13 44.97 0.77 -3.02 16 27 C 0.15 5.51 5.75 86.36 0.50 6.01 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.01 0.33 6.08 -2.39 -0.01 0.32 16 31 H 0.42 10.73 8.97 -74.06 -0.66 10.07 16 32 H 0.07 2.45 7.93 -2.39 -0.02 2.43 16 33 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.84 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 40 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 41 H 0.04 1.64 8.07 -2.39 -0.02 1.62 16 42 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 Total: -1.00 -77.85 360.99 -1.19 -79.05 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.39 Total: 14.70 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 6.21 Total: 24.16 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -8.58 Total: -134.31 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -2.01 Total: -27.97 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.77 Total: -3.02 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.85 -1.19 -79.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331164028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.892 kcal (2) G-P(sol) polarization free energy of solvation -77.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds