Wall clock time and date at job start Tue Mar 31 2020 14:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99735 * 2 1 4 4 H 1.48506 * 109.47010 * 239.99697 * 3 2 1 5 5 H 1.48497 * 109.47575 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47015 * 120.00287 * 3 2 1 7 7 C 1.37877 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99638 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00059 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46856 * 180.02562 * 9 7 2 11 11 C 1.30096 * 120.00006 * 115.43612 * 10 9 7 12 12 O 1.35092 * 120.00156 * 185.30499 * 11 10 9 13 13 N 1.37337 * 120.00048 * 5.31125 * 11 10 9 14 14 C 1.46927 * 120.63527 * 85.13179 * 13 11 10 15 15 C 1.53183 * 108.77738 * 126.41436 * 14 13 11 16 16 C 1.53042 * 109.34428 * 54.61924 * 15 14 13 17 17 C 1.53040 * 109.53400 * 298.68691 * 16 15 14 18 18 H 1.08995 * 109.47313 * 301.35895 * 17 16 15 19 19 O 1.42904 * 109.52081 * 181.29652 * 17 16 15 20 20 C 1.35733 * 116.99935 * 150.11159 * 19 17 16 21 21 N 1.32220 * 119.69504 * 359.72560 * 20 19 17 22 22 C 1.31963 * 121.66803 * 179.75498 * 21 20 19 23 23 C 1.38062 * 120.88034 * 0.52323 * 22 21 20 24 24 C 1.38798 * 119.30745 * 359.74635 * 23 22 21 25 25 C 1.38577 * 118.46310 * 359.97438 * 24 23 22 26 26 F 1.35101 * 120.46392 * 180.02562 * 25 24 23 27 27 C 1.46929 * 120.62946 * 265.15369 * 13 11 10 28 28 H 0.97002 * 119.99952 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47401 * 59.99868 * 9 7 2 30 30 H 1.09001 * 109.47258 * 299.99699 * 9 7 2 31 31 H 0.96702 * 113.99911 * 0.02562 * 12 11 10 32 32 H 1.09003 * 109.58628 * 6.62416 * 14 13 11 33 33 H 1.09004 * 109.70236 * 246.27220 * 14 13 11 34 34 H 1.08999 * 109.50247 * 174.58902 * 15 14 13 35 35 H 1.09000 * 109.49687 * 294.64921 * 15 14 13 36 36 H 1.09000 * 109.45686 * 58.67224 * 16 15 14 37 37 H 1.09000 * 109.46331 * 178.63218 * 16 15 14 38 38 H 1.07995 * 119.56228 * 180.27212 * 22 21 20 39 39 H 1.08002 * 120.35184 * 179.72780 * 23 22 21 40 40 H 1.08002 * 120.76948 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.58403 * 353.37503 * 27 13 11 42 42 H 1.09003 * 109.58702 * 113.79383 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2572 -4.4211 1.0196 12 8 3.2056 -5.3818 1.0695 13 7 1.3500 -4.2979 2.0434 14 6 0.0336 -4.9451 1.9591 15 6 -0.1739 -5.8052 3.2095 16 6 0.0230 -4.9415 4.4574 17 6 1.4513 -4.3924 4.4796 18 1 2.1593 -5.2211 4.4724 19 8 1.6442 -3.6106 5.6602 20 6 2.8999 -3.5695 6.1737 21 7 3.8722 -4.2415 5.5812 22 6 5.1078 -4.2251 6.0442 23 6 5.4297 -3.5083 7.1794 24 6 4.4375 -2.7929 7.8353 25 6 3.1509 -2.8250 7.3215 26 9 2.1542 -2.1432 7.9273 27 6 1.6773 -3.5161 3.2436 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 3.7977 -5.3901 0.3050 32 1 -0.0074 -5.5756 1.0709 33 1 -0.7464 -4.1856 1.9044 34 1 -1.1841 -6.2145 3.2061 35 1 0.5490 -6.6210 3.2140 36 1 -0.6841 -4.1121 4.4403 37 1 -0.1481 -5.5459 5.3482 38 1 5.8767 -4.7831 5.5307 39 1 6.4429 -3.5044 7.5534 40 1 4.6631 -2.2237 8.7250 41 1 2.7207 -3.2038 3.2028 42 1 1.0328 -2.6385 3.2949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331164029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:38 Heat of formation + Delta-G solvation = -45.043426 kcal Electronic energy + Delta-G solvation = -27919.942545 eV Core-core repulsion = 23816.301417 eV Total energy + Delta-G solvation = -4103.641128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.94182 -40.73567 -39.22631 -38.05453 -36.45030 -34.24844 -32.58278 -32.46980 -31.11038 -30.92214 -29.52459 -27.06394 -24.64871 -24.43129 -23.53343 -22.70567 -22.36283 -20.70303 -19.20544 -18.62906 -17.78447 -17.31130 -16.85425 -16.37517 -16.24441 -15.80758 -15.49732 -15.31385 -14.70858 -14.60552 -14.30408 -14.07503 -13.98030 -13.75086 -13.23790 -13.18936 -12.97057 -12.69622 -12.48568 -12.37045 -12.22753 -12.02580 -11.70421 -11.11597 -10.92055 -10.86181 -10.72745 -10.72264 -10.42036 -10.06903 -10.01482 -9.84917 -9.68945 -8.81182 -8.58121 -8.22831 -7.96924 -7.58016 -6.01398 -4.03144 0.75984 0.91644 2.70626 3.16766 3.33595 3.37207 3.38615 3.42028 3.43459 3.91873 4.15485 4.44712 4.46118 4.66840 4.81616 4.92345 4.92975 4.99679 5.12648 5.28411 5.33491 5.36192 5.47758 5.61384 5.64417 5.71944 5.78916 5.92419 6.02907 6.03990 6.07393 6.19330 6.28638 6.33807 6.48710 7.12480 7.40529 7.53066 7.56460 7.66013 7.85149 8.00293 8.27911 8.36948 8.97310 9.20242 9.61272 11.08383 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009826 B = 0.004510 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.956298 B = 6207.221589 C = 7394.566563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.505 4.505 8 H 0.056 0.944 9 C 0.194 3.806 10 N -0.564 5.564 11 C 0.521 3.479 12 O -0.503 6.503 13 N -0.650 5.650 14 C 0.144 3.856 15 C -0.130 4.130 16 C -0.113 4.113 17 C 0.073 3.927 18 H 0.094 0.906 19 O -0.292 6.292 20 C 0.307 3.693 21 N -0.509 5.509 22 C 0.134 3.866 23 C -0.190 4.190 24 C -0.076 4.076 25 C 0.026 3.974 26 F -0.124 7.124 27 C 0.140 3.860 28 H 0.262 0.738 29 H 0.032 0.968 30 H 0.021 0.979 31 H 0.403 0.597 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.167 0.833 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.074 0.926 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -11.708 15.439 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.067 3.933 10 N -0.299 5.299 11 C 0.206 3.794 12 O -0.296 6.296 13 N -0.390 5.390 14 C 0.020 3.980 15 C -0.169 4.169 16 C -0.150 4.150 17 C 0.016 3.984 18 H 0.112 0.888 19 O -0.197 6.197 20 C 0.126 3.874 21 N -0.232 5.232 22 C -0.022 4.022 23 C -0.210 4.210 24 C -0.103 4.103 25 C 0.003 3.997 26 F -0.103 7.103 27 C 0.015 3.985 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.257 0.743 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.184 0.816 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.092 0.908 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.781 -11.947 14.486 19.647 hybrid contribution 0.450 1.577 0.896 1.869 sum 6.232 -10.371 15.382 19.570 Atomic orbital electron populations 1.69940 1.05919 1.26863 1.50841 1.24937 0.94903 0.99069 0.95424 0.86566 0.79495 0.82774 0.78635 1.20158 1.21182 1.20348 1.21040 0.93241 0.89688 1.50451 0.92533 1.19589 0.90352 0.86005 0.97305 1.72318 1.27958 1.07286 1.22385 1.19899 0.86193 0.88035 0.85301 1.84707 1.43441 1.52766 1.48730 1.45837 1.12848 1.60346 1.19950 1.21329 0.84639 0.95206 0.96866 1.21976 1.02057 0.98345 0.94501 1.21568 0.94816 1.00072 0.98563 1.23053 0.98577 0.94453 0.82354 0.88825 1.86347 1.22553 1.67730 1.43100 1.19953 0.86454 0.91556 0.89474 1.67482 1.01481 1.21768 1.32461 1.22567 0.91869 0.95030 0.92714 1.21900 1.00647 1.00589 0.97907 1.21501 0.90100 0.98312 1.00341 1.17668 0.86943 1.00311 0.94754 1.91531 1.59369 1.77450 1.81944 1.21531 1.01656 0.92854 0.82474 0.92838 0.94997 0.96077 0.74269 0.91025 0.91750 0.90457 0.91448 0.90573 0.91472 0.81612 0.83633 0.83051 0.90758 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.86 9.39 -34.44 -0.32 -15.18 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.19 5.29 6.07 -5.19 -0.03 5.26 16 10 N -0.56 -13.32 10.48 -63.71 -0.67 -13.99 16 11 C 0.52 10.52 7.33 -88.57 -0.65 9.87 16 12 O -0.50 -8.58 13.62 -16.98 -0.23 -8.81 16 13 N -0.65 -12.10 1.55 -175.37 -0.27 -12.37 16 14 C 0.14 2.25 6.12 -3.71 -0.02 2.23 16 15 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 16 C -0.11 -1.48 5.54 -26.69 -0.15 -1.63 16 17 C 0.07 1.13 2.53 -26.61 -0.07 1.06 16 18 H 0.09 1.48 6.98 -51.93 -0.36 1.12 16 19 O -0.29 -4.71 9.64 -18.91 -0.18 -4.89 16 20 C 0.31 4.56 7.46 -17.07 -0.13 4.43 16 21 N -0.51 -7.07 8.65 -13.28 -0.11 -7.19 16 22 C 0.13 1.37 11.17 -17.56 -0.20 1.17 16 23 C -0.19 -1.57 10.10 -39.44 -0.40 -1.97 16 24 C -0.08 -0.73 10.16 -39.25 -0.40 -1.13 16 25 C 0.03 0.34 7.35 -39.14 -0.29 0.05 16 26 F -0.12 -1.77 17.13 2.25 0.04 -1.73 16 27 C 0.14 2.61 5.93 -3.71 -0.02 2.59 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 29 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.02 0.59 6.07 -51.93 -0.32 0.28 16 31 H 0.40 5.45 8.97 45.56 0.41 5.86 16 32 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 33 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.07 1.50 7.93 -51.93 -0.41 1.09 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -34.13 361.00 -8.07 -42.20 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.86 Total: 3.66 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -2.93 Total: 6.58 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.32 Total: -59.69 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.41 Total: -13.70 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.13 -8.07 -42.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331164029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.845 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds