Wall clock time and date at job start Tue Mar 31 2020 14:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99735 * 2 1 4 4 H 1.48506 * 109.47010 * 239.99697 * 3 2 1 5 5 H 1.48497 * 109.47575 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47015 * 120.00287 * 3 2 1 7 7 C 1.37877 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99638 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00059 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46856 * 180.02562 * 9 7 2 11 11 C 1.30096 * 120.00006 * 115.43612 * 10 9 7 12 12 O 1.35092 * 120.00156 * 185.30499 * 11 10 9 13 13 N 1.37337 * 120.00048 * 5.31125 * 11 10 9 14 14 C 1.46927 * 120.63527 * 85.13179 * 13 11 10 15 15 C 1.53183 * 108.77738 * 126.41436 * 14 13 11 16 16 C 1.53042 * 109.34428 * 54.61924 * 15 14 13 17 17 C 1.53040 * 109.53400 * 298.68691 * 16 15 14 18 18 H 1.08995 * 109.47313 * 301.35895 * 17 16 15 19 19 O 1.42904 * 109.52081 * 181.29652 * 17 16 15 20 20 C 1.35733 * 116.99935 * 150.11159 * 19 17 16 21 21 N 1.32220 * 119.69504 * 359.72560 * 20 19 17 22 22 C 1.31963 * 121.66803 * 179.75498 * 21 20 19 23 23 C 1.38062 * 120.88034 * 0.52323 * 22 21 20 24 24 C 1.38798 * 119.30745 * 359.74635 * 23 22 21 25 25 C 1.38577 * 118.46310 * 359.97438 * 24 23 22 26 26 F 1.35101 * 120.46392 * 180.02562 * 25 24 23 27 27 C 1.46929 * 120.62946 * 265.15369 * 13 11 10 28 28 H 0.97002 * 119.99952 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47401 * 59.99868 * 9 7 2 30 30 H 1.09001 * 109.47258 * 299.99699 * 9 7 2 31 31 H 0.96702 * 113.99911 * 0.02562 * 12 11 10 32 32 H 1.09003 * 109.58628 * 6.62416 * 14 13 11 33 33 H 1.09004 * 109.70236 * 246.27220 * 14 13 11 34 34 H 1.08999 * 109.50247 * 174.58902 * 15 14 13 35 35 H 1.09000 * 109.49687 * 294.64921 * 15 14 13 36 36 H 1.09000 * 109.45686 * 58.67224 * 16 15 14 37 37 H 1.09000 * 109.46331 * 178.63218 * 16 15 14 38 38 H 1.07995 * 119.56228 * 180.27212 * 22 21 20 39 39 H 1.08002 * 120.35184 * 179.72780 * 23 22 21 40 40 H 1.08002 * 120.76948 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.58403 * 353.37503 * 27 13 11 42 42 H 1.09003 * 109.58702 * 113.79383 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2572 -4.4211 1.0196 12 8 3.2056 -5.3818 1.0695 13 7 1.3500 -4.2979 2.0434 14 6 0.0336 -4.9451 1.9591 15 6 -0.1739 -5.8052 3.2095 16 6 0.0230 -4.9415 4.4574 17 6 1.4513 -4.3924 4.4796 18 1 2.1593 -5.2211 4.4724 19 8 1.6442 -3.6106 5.6602 20 6 2.8999 -3.5695 6.1737 21 7 3.8722 -4.2415 5.5812 22 6 5.1078 -4.2251 6.0442 23 6 5.4297 -3.5083 7.1794 24 6 4.4375 -2.7929 7.8353 25 6 3.1509 -2.8250 7.3215 26 9 2.1542 -2.1432 7.9273 27 6 1.6773 -3.5161 3.2436 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 3.7977 -5.3901 0.3050 32 1 -0.0074 -5.5756 1.0709 33 1 -0.7464 -4.1856 1.9044 34 1 -1.1841 -6.2145 3.2061 35 1 0.5490 -6.6210 3.2140 36 1 -0.6841 -4.1121 4.4403 37 1 -0.1481 -5.5459 5.3482 38 1 5.8767 -4.7831 5.5307 39 1 6.4429 -3.5044 7.5534 40 1 4.6631 -2.2237 8.7250 41 1 2.7207 -3.2038 3.2028 42 1 1.0328 -2.6385 3.2949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331164029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:37 Heat of formation + Delta-G solvation = -72.231077 kcal Electronic energy + Delta-G solvation = -27921.121490 eV Core-core repulsion = 23816.301417 eV Total energy + Delta-G solvation = -4104.820073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.94743 -41.74201 -40.56300 -39.32662 -37.76319 -36.06679 -34.48526 -33.35607 -32.71260 -32.02958 -30.60836 -29.12827 -26.15322 -25.50142 -24.65895 -24.35854 -23.55001 -22.14344 -20.59984 -19.68270 -18.85994 -18.57000 -18.22375 -18.13664 -17.64659 -17.44082 -16.63389 -16.32920 -16.30403 -15.93829 -15.69149 -15.45529 -15.05189 -14.90351 -14.63247 -14.31217 -14.21786 -14.05890 -13.93190 -13.82449 -13.69544 -13.34064 -13.17305 -12.90932 -12.69150 -12.28464 -12.22147 -12.05663 -11.92159 -11.80308 -11.61215 -10.90111 -10.85367 -10.74960 -10.30228 -9.87220 -9.54148 -9.06919 -8.24836 -6.36483 -0.10038 0.08612 1.31238 1.37207 1.39500 1.47335 1.65764 2.01639 2.36652 2.57664 2.97393 3.05983 3.29126 3.35499 3.64091 3.70878 3.75101 3.91163 3.95655 4.04056 4.12637 4.27807 4.34439 4.46522 4.58659 4.68367 4.77930 4.80122 4.86448 4.92257 4.96801 4.98641 5.00074 5.21371 5.27534 5.33635 5.45151 5.64211 6.01319 6.08315 6.23412 6.31343 6.62357 6.69032 6.80761 7.26765 7.49263 8.84438 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009826 B = 0.004510 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.956298 B = 6207.221589 C = 7394.566563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.047 0.953 9 C 0.215 3.785 10 N -0.599 5.599 11 C 0.548 3.452 12 O -0.487 6.487 13 N -0.661 5.661 14 C 0.138 3.862 15 C -0.114 4.114 16 C -0.110 4.110 17 C 0.089 3.911 18 H 0.093 0.907 19 O -0.312 6.312 20 C 0.271 3.729 21 N -0.536 5.536 22 C 0.123 3.877 23 C -0.166 4.166 24 C -0.067 4.067 25 C -0.001 4.001 26 F -0.139 7.139 27 C 0.151 3.849 28 H 0.267 0.733 29 H -0.002 1.002 30 H 0.006 0.994 31 H 0.421 0.579 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.195 0.805 39 H 0.192 0.808 40 H 0.185 0.815 41 H 0.050 0.950 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.405 -12.525 17.196 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.065 0.935 9 C 0.087 3.913 10 N -0.337 5.337 11 C 0.233 3.767 12 O -0.282 6.282 13 N -0.402 5.402 14 C 0.015 3.985 15 C -0.152 4.152 16 C -0.147 4.147 17 C 0.031 3.969 18 H 0.111 0.889 19 O -0.219 6.219 20 C 0.091 3.909 21 N -0.259 5.259 22 C -0.032 4.032 23 C -0.186 4.186 24 C -0.093 4.093 25 C -0.023 4.023 26 F -0.118 7.118 27 C 0.025 3.975 28 H 0.075 0.925 29 H 0.016 0.984 30 H 0.024 0.976 31 H 0.278 0.722 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.212 0.788 39 H 0.209 0.791 40 H 0.202 0.798 41 H 0.068 0.932 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.934 -12.805 16.253 22.161 hybrid contribution -0.044 1.746 0.415 1.795 sum 7.890 -11.060 16.669 21.504 Atomic orbital electron populations 1.70055 1.07411 1.28053 1.50989 1.25829 0.95846 1.02765 0.94529 0.85497 0.78381 0.78158 0.78975 1.19137 1.19975 1.19792 1.21311 0.92966 0.91311 1.51313 0.93477 1.19108 0.90249 0.87053 0.94880 1.72225 1.28536 1.08058 1.24861 1.19964 0.85524 0.86721 0.84445 1.84722 1.42792 1.51005 1.49684 1.45973 1.13773 1.60912 1.19586 1.21500 0.82552 0.95186 0.99246 1.21887 1.04199 0.97375 0.91782 1.21604 0.92944 1.00163 1.00036 1.22808 0.99967 0.93231 0.80894 0.88894 1.86315 1.24067 1.68440 1.43045 1.20210 0.86337 0.93555 0.90776 1.67440 1.02735 1.22371 1.33341 1.23247 0.91135 0.95291 0.93571 1.22408 1.02223 0.97812 0.96142 1.21983 0.88519 0.97840 1.00977 1.18082 0.88158 1.00998 0.95046 1.91484 1.60276 1.77858 1.82132 1.21307 0.99180 0.92673 0.84311 0.92459 0.98395 0.97624 0.72192 0.90457 0.93505 0.87200 0.90586 0.91563 0.89155 0.78778 0.79084 0.79760 0.93158 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.97 46.22 29.54 68.60 2.03 48.24 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.53 -32.36 9.39 25.60 0.24 -32.12 16 8 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 9 C 0.21 12.34 6.07 85.63 0.52 12.86 16 10 N -0.60 -29.26 10.48 -469.73 -4.92 -34.18 16 11 C 0.55 22.47 7.33 179.63 1.32 23.79 16 12 O -0.49 -16.09 13.62 -83.67 -1.14 -17.23 16 13 N -0.66 -25.41 1.55 -819.22 -1.27 -26.68 16 14 C 0.14 4.39 6.12 86.36 0.53 4.92 16 15 C -0.11 -2.64 6.08 30.67 0.19 -2.45 16 16 C -0.11 -2.84 5.54 30.62 0.17 -2.68 16 17 C 0.09 2.81 2.53 30.67 0.08 2.88 16 18 H 0.09 2.95 6.98 -2.39 -0.02 2.93 16 19 O -0.31 -10.51 9.64 -90.56 -0.87 -11.38 16 20 C 0.27 8.20 7.46 84.84 0.63 8.83 16 21 N -0.54 -14.67 8.65 -308.77 -2.67 -17.34 16 22 C 0.12 2.22 11.17 84.63 0.95 3.16 16 23 C -0.17 -2.12 10.10 22.36 0.23 -1.89 16 24 C -0.07 -1.11 10.16 22.48 0.23 -0.88 16 25 C 0.00 -0.02 7.35 22.56 0.17 0.15 16 26 F -0.14 -4.04 17.13 44.97 0.77 -3.27 16 27 C 0.15 5.93 5.93 86.36 0.51 6.44 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 29 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.01 0.35 6.07 -2.39 -0.01 0.33 16 31 H 0.42 10.75 8.97 -74.06 -0.66 10.09 16 32 H 0.08 2.34 7.93 -2.39 -0.02 2.33 16 33 H 0.05 1.64 8.07 -2.38 -0.02 1.62 16 34 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.19 0.72 8.06 -2.91 -0.02 0.69 16 40 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 42 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -78.63 361.00 -1.19 -79.82 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.39 Total: 14.78 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 6.21 Total: 24.02 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -8.57 Total: -134.98 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -2.01 Total: -28.61 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.77 Total: -3.27 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -78.63 -1.19 -79.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331164029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.590 kcal (2) G-P(sol) polarization free energy of solvation -78.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds