Wall clock time and date at job start Tue Mar 31 2020 13:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99734 * 2 1 4 4 H 1.48499 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46961 * 300.00083 * 3 2 1 6 6 H 1.48492 * 109.46986 * 59.99855 * 3 2 1 7 7 C 1.37873 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00553 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47436 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47246 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47005 * 180.02562 * 11 10 9 13 13 C 1.38282 * 119.99738 * 180.02562 * 12 11 10 14 14 N 1.33042 * 120.86646 * 359.80158 * 13 12 11 15 15 C 1.32013 * 120.91959 * 179.66562 * 14 13 12 16 16 N 1.31646 * 122.78088 * 0.30630 * 15 14 13 17 17 C 1.33002 * 120.79195 * 359.97082 * 16 15 14 18 18 O 1.34369 * 134.12911 * 180.02562 * 17 16 15 19 19 C 1.34901 * 110.96268 * 180.02562 * 18 17 16 20 20 C 1.47774 * 125.12668 * 179.97438 * 19 18 17 21 21 C 1.39599 * 120.14902 * 179.74863 * 20 19 18 22 22 C 1.37956 * 119.85138 * 179.67625 * 21 20 19 23 23 C 1.38363 * 120.14236 * 0.61927 * 22 21 20 24 24 C 1.38363 * 120.29960 * 359.67652 * 23 22 21 25 25 C 1.37948 * 120.14675 * 0.02562 * 24 23 22 26 26 C 1.35536 * 109.75406 * 359.97438 * 19 18 17 27 27 C 1.40322 * 120.86188 * 179.97438 * 13 12 11 28 28 H 0.96994 * 120.00271 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47198 * 60.00206 * 9 7 2 30 30 H 1.08999 * 109.47384 * 300.00452 * 9 7 2 31 31 H 1.08998 * 109.47372 * 60.00154 * 10 9 7 32 32 H 1.08998 * 109.47410 * 300.00092 * 10 9 7 33 33 H 1.09000 * 109.47439 * 59.99928 * 11 10 9 34 34 H 1.08999 * 109.47333 * 300.00058 * 11 10 9 35 35 H 0.96994 * 120.00349 * 359.97438 * 12 11 10 36 36 H 1.08002 * 118.61127 * 180.27481 * 15 14 13 37 37 H 1.08000 * 120.07245 * 359.97418 * 21 20 19 38 38 H 1.07998 * 119.92808 * 180.31464 * 22 21 20 39 39 H 1.07997 * 119.84831 * 179.69301 * 23 22 21 40 40 H 1.08001 * 119.92220 * 180.02562 * 24 23 22 41 41 H 1.08005 * 120.07605 * 180.02562 * 25 24 23 42 42 H 1.08005 * 127.00650 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4325 -6.1005 -0.0006 13 6 1.9716 -7.4043 -0.0015 14 7 0.6674 -7.6671 0.0009 15 6 0.2262 -8.9113 -0.0066 16 7 1.0312 -9.9530 -0.0109 17 6 2.3515 -9.7932 -0.0084 18 8 3.3962 -10.6382 -0.0118 19 6 4.5637 -9.9623 -0.0060 20 6 5.9051 -10.5823 -0.0071 21 6 7.0480 -9.7806 -0.0060 22 6 8.2972 -10.3659 -0.0003 23 6 8.4189 -11.7441 -0.0086 24 6 7.2902 -12.5445 -0.0160 25 6 6.0351 -11.9722 -0.0156 26 6 4.3210 -8.6289 0.0009 27 6 2.8673 -8.4844 -0.0015 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8720 -3.6043 0.8894 32 1 2.8721 -3.6043 -0.8905 33 1 0.8541 -5.0446 -0.8914 34 1 0.8535 -5.0451 0.8885 35 1 3.3861 -5.9233 -0.0002 36 1 -0.8403 -9.0819 -0.0088 37 1 6.9543 -8.7047 -0.0047 38 1 9.1822 -9.7469 0.0057 39 1 9.3992 -12.1972 -0.0091 40 1 7.3922 -13.6196 -0.0220 41 1 5.1548 -12.5980 -0.0209 42 1 5.0532 -7.8349 0.0070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337593974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:08 Heat of formation + Delta-G solvation = 53.595125 kcal Electronic energy + Delta-G solvation = -24767.389181 eV Core-core repulsion = 21098.794567 eV Total energy + Delta-G solvation = -3668.594615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.87698 -41.03005 -39.85217 -38.09162 -35.83284 -34.47193 -33.82272 -33.32806 -32.18090 -31.86503 -29.65270 -28.30911 -25.73476 -25.43520 -24.32802 -23.41637 -23.09389 -22.15071 -21.84936 -20.02612 -19.06273 -18.48907 -18.17371 -17.83950 -17.27894 -16.54102 -16.44565 -16.34216 -16.11887 -15.56382 -15.49388 -15.24248 -15.05310 -14.66065 -14.32047 -14.27518 -14.00074 -13.99980 -13.72972 -13.70996 -12.89121 -12.57084 -12.46894 -12.35841 -12.31930 -12.02109 -11.90106 -11.64402 -11.50338 -11.18348 -11.05998 -10.89195 -10.55463 -10.35846 -9.94194 -9.77583 -8.66676 -8.19436 -6.30267 -0.61182 0.08976 0.27551 0.42808 0.95136 1.39821 1.41468 1.42025 1.54593 1.91495 2.42026 2.72807 2.86704 2.99117 3.10105 3.14574 3.35622 3.61382 3.87550 3.94640 4.03964 4.11954 4.16385 4.23217 4.26067 4.36542 4.49900 4.56607 4.57825 4.85465 4.89229 4.95855 5.04362 5.11283 5.11791 5.16333 5.39416 5.49022 5.51268 5.55040 5.57737 5.71866 5.80534 5.85059 5.90548 5.97078 6.23626 6.45881 6.87203 7.16328 7.39164 8.92554 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.002236 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.566382 B =12519.182635 C =14406.986113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.105 4.105 11 C 0.140 3.860 12 N -0.681 5.681 13 C 0.487 3.513 14 N -0.605 5.605 15 C 0.374 3.626 16 N -0.571 5.571 17 C 0.303 3.697 18 O -0.187 6.187 19 C 0.050 3.950 20 C -0.043 4.043 21 C -0.099 4.099 22 C -0.118 4.118 23 C -0.109 4.109 24 C -0.122 4.122 25 C -0.116 4.116 26 C -0.143 4.143 27 C -0.301 4.301 28 H 0.263 0.737 29 H -0.005 1.005 30 H -0.005 1.005 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.423 0.577 36 H 0.244 0.756 37 H 0.146 0.854 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.122 0.878 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.631 -24.777 -0.018 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.143 4.143 11 C 0.017 3.983 12 N -0.311 5.311 13 C 0.237 3.763 14 N -0.335 5.335 15 C 0.086 3.914 16 N -0.303 5.303 17 C 0.123 3.877 18 O -0.082 6.082 19 C 0.003 3.997 20 C -0.043 4.043 21 C -0.117 4.117 22 C -0.136 4.136 23 C -0.127 4.127 24 C -0.140 4.140 25 C -0.134 4.134 26 C -0.163 4.163 27 C -0.312 4.312 28 H 0.072 0.928 29 H 0.013 0.987 30 H 0.013 0.987 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.261 0.739 36 H 0.259 0.741 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.165 0.835 41 H 0.140 0.860 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 15.501 -25.000 -0.018 29.416 hybrid contribution 0.644 1.187 0.002 1.351 sum 16.146 -23.813 -0.016 28.770 Atomic orbital electron populations 1.70101 1.07799 1.27688 1.51712 1.25989 0.95761 1.03426 0.94898 0.85405 0.79193 0.78864 0.77607 1.18336 1.20627 1.20617 1.21699 0.93677 0.92102 1.50307 0.91754 1.18917 0.94354 0.92623 0.95320 1.21622 0.98613 0.92140 1.01926 1.21344 0.91321 0.84068 1.01594 1.44713 1.10402 1.01136 1.74822 1.18204 0.88016 0.85186 0.84885 1.68255 1.13199 1.25132 1.26902 1.25393 1.00680 0.79753 0.85596 1.67344 0.99414 1.37524 1.25983 1.19668 0.88023 0.85201 0.94853 1.83786 1.12691 1.35825 1.75937 1.20649 0.83677 0.89854 1.05519 1.17901 0.86762 0.94006 1.05616 1.21364 0.90891 1.00724 0.98709 1.21459 0.97396 0.95678 0.99032 1.21734 0.99824 0.93928 0.97179 1.21402 0.91535 1.01557 0.99476 1.21431 0.99151 0.93486 0.99325 1.22486 0.92320 0.96085 1.05404 1.20709 0.96349 0.94635 1.19503 0.92827 0.98656 0.98667 0.91617 0.91625 0.92252 0.92259 0.73853 0.74056 0.83613 0.82617 0.82917 0.83466 0.85973 0.78920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.28 4.97 29.85 0.15 1.43 16 10 C -0.11 -3.86 5.27 30.59 0.16 -3.70 16 11 C 0.14 4.56 5.74 86.38 0.50 5.05 16 12 N -0.68 -18.38 5.69 -344.15 -1.96 -20.34 16 13 C 0.49 14.18 7.55 133.41 1.01 15.18 16 14 N -0.61 -18.11 9.72 -197.14 -1.92 -20.03 16 15 C 0.37 9.66 12.23 180.86 2.21 11.87 16 16 N -0.57 -16.75 10.46 -313.01 -3.27 -20.02 16 17 C 0.30 9.08 8.63 85.11 0.73 9.81 16 18 O -0.19 -5.24 10.25 -9.08 -0.09 -5.33 16 19 C 0.05 1.15 6.98 24.17 0.17 1.32 16 20 C -0.04 -0.79 5.87 -20.10 -0.12 -0.90 16 21 C -0.10 -1.33 9.54 22.53 0.21 -1.11 16 22 C -0.12 -1.17 10.03 22.23 0.22 -0.94 16 23 C -0.11 -1.02 10.04 22.33 0.22 -0.79 16 24 C -0.12 -1.44 10.03 22.23 0.22 -1.22 16 25 C -0.12 -1.96 9.71 22.53 0.22 -1.74 16 26 C -0.14 -3.06 10.36 23.68 0.25 -2.82 16 27 C -0.30 -8.28 6.33 -20.14 -0.13 -8.41 16 28 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 35 H 0.42 9.16 8.41 -92.71 -0.78 8.38 16 36 H 0.24 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.15 1.39 6.92 -2.91 -0.02 1.37 16 38 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16 39 H 0.15 0.57 8.06 -2.91 -0.02 0.55 16 40 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.12 2.13 7.87 -2.91 -0.02 2.11 16 42 H 0.19 2.70 7.20 -2.91 -0.02 2.67 16 Total: -1.00 -71.41 365.64 2.07 -69.34 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.27 Total: 12.72 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 6.73 Total: -5.93 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -6.86 Total: -116.03 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.09 Total: -5.33 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.41 2.07 -69.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337593974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.939 kcal (2) G-P(sol) polarization free energy of solvation -71.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds