Wall clock time and date at job start Tue Mar 31 2020 13:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86794 * 120.00239 * 2 1 4 4 H 1.48497 * 109.47525 * 275.00451 * 3 2 1 5 5 H 1.48506 * 109.47154 * 35.00296 * 3 2 1 6 6 H 1.48499 * 109.47227 * 155.00462 * 3 2 1 7 7 C 1.40110 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99942 * 185.04046 * 7 2 1 9 9 C 1.46233 * 120.00126 * 5.03948 * 7 2 1 10 10 O 1.21716 * 119.99623 * 354.95933 * 9 7 2 11 11 N 1.34772 * 120.00049 * 174.96738 * 9 7 2 12 12 C 1.39280 * 120.00033 * 185.45015 * 11 9 7 13 13 C 1.39716 * 120.82854 * 214.59555 * 12 11 9 14 14 C 1.37758 * 119.23228 * 179.97438 * 13 12 11 15 15 N 1.32075 * 120.93417 * 359.72142 * 14 13 12 16 16 C 1.32488 * 121.81960 * 0.56787 * 15 14 13 17 17 N 1.39027 * 119.66725 * 179.70441 * 16 15 14 18 18 C 1.47157 * 111.00773 * 235.04174 * 17 16 15 19 19 C 1.52903 * 108.49710 * 52.15124 * 18 17 16 20 20 C 1.50714 * 109.95556 * 50.40461 * 19 18 17 21 21 C 1.38678 * 118.48229 * 163.25035 * 20 19 18 22 22 C 1.38034 * 120.34352 * 179.82908 * 21 20 19 23 23 C 1.38263 * 119.82802 * 0.16054 * 22 21 20 24 24 C 1.38013 * 119.86990 * 359.57439 * 23 22 21 25 25 C 1.37835 * 121.66392 * 343.09941 * 20 19 18 26 26 C 1.46633 * 111.00171 * 358.03887 * 17 16 15 27 27 C 1.38862 * 120.67170 * 359.43545 * 16 15 14 28 28 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00121 * 5.43913 * 11 9 7 30 30 H 1.08000 * 120.38600 * 359.95616 * 13 12 11 31 31 H 1.08002 * 119.53455 * 180.02562 * 14 13 12 32 32 H 1.09001 * 109.63571 * 292.45145 * 18 17 16 33 33 H 1.08992 * 109.80478 * 171.94779 * 18 17 16 34 34 H 1.09005 * 109.38998 * 290.25600 * 19 18 17 35 35 H 1.09005 * 109.30920 * 170.50462 * 19 18 17 36 36 H 1.07993 * 119.82876 * 359.80523 * 21 20 19 37 37 H 1.08009 * 120.08409 * 179.89265 * 22 21 20 38 38 H 1.08004 * 120.05868 * 179.79442 * 23 22 21 39 39 H 1.08003 * 119.80948 * 180.25660 * 24 23 22 40 40 H 1.09004 * 109.26971 * 49.34785 * 26 17 16 41 41 H 1.08998 * 109.28091 * 168.86079 * 26 17 16 42 42 H 1.07999 * 120.50453 * 180.24992 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.3823 2.1075 -1.3947 5 1 1.4948 2.6198 0.8031 6 1 3.5869 1.4118 0.5916 7 6 2.0070 -1.2134 -0.0005 8 1 3.0839 -1.2153 0.0816 9 6 1.2800 -2.4773 -0.1124 10 8 0.0629 -2.4813 -0.1125 11 7 1.9577 -3.6377 -0.2151 12 6 1.2701 -4.8287 -0.4354 13 6 1.7157 -6.0274 0.1272 14 6 1.0099 -7.1861 -0.1119 15 7 -0.0798 -7.1756 -0.8580 16 6 -0.5343 -6.0627 -1.4151 17 7 -1.6827 -6.1041 -2.1975 18 6 -1.4301 -5.5455 -3.5353 19 6 -0.2057 -6.2429 -4.1289 20 6 -0.3622 -7.7380 -4.0203 21 6 0.4513 -8.5465 -4.7998 22 6 0.3429 -9.9207 -4.7282 23 6 -0.5839 -10.4940 -3.8773 24 6 -1.3902 -9.6903 -3.0971 25 6 -1.2844 -8.3090 -3.1697 26 6 -2.1944 -7.4738 -2.3077 27 6 0.1217 -4.8543 -1.2210 28 1 -0.4849 0.8401 0.0004 29 1 2.9245 -3.6434 -0.1357 30 1 2.6033 -6.0455 0.7422 31 1 1.3497 -8.1154 0.3210 32 1 -1.2391 -4.4754 -3.4553 33 1 -2.2951 -5.7162 -4.1761 34 1 0.6867 -5.9321 -3.5855 35 1 -0.1058 -5.9647 -5.1781 36 1 1.1732 -8.0986 -5.4666 37 1 0.9775 -10.5464 -5.3385 38 1 -0.6742 -11.5688 -3.8208 39 1 -2.1109 -10.1393 -2.4297 40 1 -2.2543 -7.9166 -1.3134 41 1 -3.1895 -7.4517 -2.7521 42 1 -0.2533 -3.9481 -1.6731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341457227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:01 Heat of formation + Delta-G solvation = 19.095823 kcal Electronic energy + Delta-G solvation = -26926.402656 eV Core-core repulsion = 23256.312039 eV Total energy + Delta-G solvation = -3670.090617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.24258 -40.66313 -39.37549 -37.92805 -35.65940 -34.60526 -33.79393 -32.74427 -31.62718 -30.66138 -30.04327 -28.44552 -26.06451 -25.17204 -24.15291 -23.15566 -23.04995 -21.94819 -20.57334 -19.57655 -18.27464 -17.79706 -17.51697 -17.21850 -16.62715 -16.47057 -16.33390 -16.10044 -15.88924 -15.48879 -15.08154 -14.92417 -14.63245 -14.40012 -14.23500 -14.15908 -13.92006 -13.48665 -13.25277 -13.18292 -12.88560 -12.86845 -12.74910 -12.68436 -12.48434 -12.20247 -12.04701 -11.70411 -11.53297 -10.98017 -10.70234 -10.55877 -9.89681 -9.61778 -9.45274 -9.20132 -9.00686 -8.40015 -6.98240 0.30850 0.44821 0.49771 0.55553 1.39148 1.39730 1.56288 2.18525 2.35215 2.52892 2.76789 2.88711 3.04498 3.52877 3.58828 3.76915 3.85119 3.89760 4.02918 4.14680 4.24294 4.28360 4.31306 4.34676 4.46555 4.53942 4.58274 4.70260 4.77002 4.79353 4.83218 4.88019 4.98999 5.16388 5.20916 5.23086 5.32913 5.40273 5.60826 5.65624 5.70474 5.73206 5.78555 6.11354 6.14557 6.17109 6.30608 6.75058 7.16178 7.25508 8.29843 8.53438 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.003187 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.066769 B = 8783.673102 C = 9020.024026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.030 3.970 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.528 3.472 10 O -0.602 6.602 11 N -0.687 5.687 12 C 0.218 3.782 13 C -0.243 4.243 14 C 0.137 3.863 15 N -0.538 5.538 16 C 0.328 3.672 17 N -0.484 5.484 18 C 0.059 3.941 19 C -0.108 4.108 20 C -0.095 4.095 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.115 4.115 25 C -0.089 4.089 26 C 0.102 3.898 27 C -0.217 4.217 28 H 0.278 0.722 29 H 0.411 0.589 30 H 0.156 0.844 31 H 0.189 0.811 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 -17.466 -8.422 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.599 4.599 8 H 0.113 0.887 9 C 0.335 3.665 10 O -0.486 6.486 11 N -0.332 5.332 12 C 0.111 3.889 13 C -0.267 4.267 14 C -0.020 4.020 15 N -0.254 5.254 16 C 0.098 3.902 17 N -0.200 5.200 18 C -0.067 4.067 19 C -0.146 4.146 20 C -0.095 4.095 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.134 4.134 25 C -0.091 4.091 26 C -0.024 4.024 27 C -0.243 4.243 28 H 0.088 0.912 29 H 0.247 0.753 30 H 0.174 0.826 31 H 0.206 0.794 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.144 0.856 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.515 -17.719 -8.355 19.597 hybrid contribution 1.550 1.567 0.090 2.206 sum 2.065 -16.153 -8.266 18.262 Atomic orbital electron populations 1.70159 1.09584 1.29420 1.34818 1.27011 0.95544 1.05017 0.91112 0.84942 0.78956 0.74809 0.79260 1.18722 1.19750 1.16915 1.21406 0.95335 0.89457 1.53664 0.88741 1.18801 0.87173 0.83604 0.76875 1.90632 1.15610 1.86640 1.55768 1.43728 1.10461 1.04949 1.74016 1.18288 0.92425 0.87520 0.90635 1.22013 1.06263 0.92168 1.06299 1.22756 0.88859 0.98162 0.92201 1.67654 1.15738 1.27580 1.14444 1.19433 0.88631 0.88409 0.93756 1.59647 1.24726 1.21822 1.13775 1.22351 0.98915 0.98915 0.86527 1.21024 0.98388 0.92305 1.02864 1.19548 0.97352 0.94817 0.97803 1.21213 0.99249 0.94439 0.99790 1.21329 0.99213 0.94449 0.99630 1.21360 0.95784 1.00775 0.96166 1.21192 1.00296 0.92185 0.99712 1.20100 0.97316 0.95230 0.96408 1.21030 0.96953 0.84193 1.00273 1.21320 0.99996 0.97841 1.05119 0.91197 0.75289 0.82628 0.79411 0.91180 0.87096 0.92940 0.88185 0.85639 0.84060 0.83752 0.84705 0.88950 0.87704 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.24 11.84 21.85 0.26 -47.98 16 2 C 0.03 1.60 5.50 85.32 0.47 2.07 16 3 Si 1.00 39.35 29.56 68.60 2.03 41.38 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 7 C -0.56 -30.68 9.53 24.80 0.24 -30.45 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.53 29.99 7.49 86.32 0.65 30.63 16 10 O -0.60 -39.44 12.87 -4.40 -0.06 -39.49 16 11 N -0.69 -31.09 5.33 -307.08 -1.64 -32.73 16 12 C 0.22 9.30 6.29 38.54 0.24 9.54 16 13 C -0.24 -8.09 10.06 22.51 0.23 -7.87 16 14 C 0.14 4.19 11.16 84.54 0.94 5.14 16 15 N -0.54 -18.57 7.80 -193.54 -1.51 -20.08 16 16 C 0.33 12.67 4.67 132.96 0.62 13.29 16 17 N -0.48 -16.62 5.06 -706.72 -3.58 -20.20 16 18 C 0.06 1.77 5.63 86.22 0.49 2.26 16 19 C -0.11 -3.02 5.25 29.82 0.16 -2.86 16 20 C -0.09 -2.53 5.53 -19.85 -0.11 -2.64 16 21 C -0.13 -2.97 9.66 22.33 0.22 -2.75 16 22 C -0.13 -2.49 10.05 22.23 0.22 -2.26 16 23 C -0.12 -2.30 10.05 22.22 0.22 -2.08 16 24 C -0.12 -2.49 9.65 22.33 0.22 -2.28 16 25 C -0.09 -2.31 4.66 -19.87 -0.09 -2.40 16 26 C 0.10 2.82 5.18 85.59 0.44 3.26 16 27 C -0.22 -9.83 7.32 22.64 0.17 -9.67 16 28 H 0.28 14.96 8.29 -92.71 -0.77 14.19 16 29 H 0.41 15.41 8.80 -92.71 -0.82 14.59 16 30 H 0.16 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.19 4.09 8.06 -2.91 -0.02 4.06 16 32 H 0.07 2.41 7.17 -2.39 -0.02 2.39 16 33 H 0.11 2.73 8.05 -2.39 -0.02 2.71 16 34 H 0.05 1.76 6.92 -2.38 -0.02 1.74 16 35 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 37 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.09 2.67 7.42 -2.38 -0.02 2.65 16 41 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.10 5.56 5.79 -2.91 -0.02 5.55 16 Total: -1.00 -76.42 346.39 1.07 -75.35 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: 0.25 Total: 42.80 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.31 Total: 0.95 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -6.46 Total: -120.99 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.06 Total: -39.49 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -76.42 1.07 -75.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341457227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.450 kcal (2) G-P(sol) polarization free energy of solvation -76.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds