Wall clock time and date at job start Tue Mar 31 2020 14:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99629 * 2 1 4 4 H 1.48494 * 109.46964 * 269.99437 * 3 2 1 5 5 H 1.48496 * 109.47305 * 29.99742 * 3 2 1 6 6 H 1.48505 * 109.46822 * 149.99281 * 3 2 1 7 7 C 1.37874 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00310 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47373 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46951 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99774 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47177 * 180.02562 * 12 11 10 14 14 C 1.38160 * 120.01769 * 260.18574 * 13 12 11 15 15 C 1.38347 * 120.04474 * 180.25582 * 14 13 12 16 16 Cl 1.73596 * 119.96291 * 179.76685 * 15 14 13 17 17 C 1.38391 * 120.08020 * 359.78758 * 15 14 13 18 18 C 1.38125 * 120.04435 * 359.97438 * 17 15 14 19 19 C 1.38696 * 120.02461 * 79.99251 * 13 12 11 20 20 O 1.35923 * 120.04500 * 0.02562 * 19 13 12 21 21 C 1.42893 * 117.00414 * 185.21985 * 20 19 13 22 22 C 1.54881 * 110.48853 * 270.90317 * 21 20 19 23 23 C 1.54894 * 102.75092 * 203.37749 * 22 21 20 24 24 C 1.54270 * 104.19456 * 37.94156 * 23 22 21 25 25 C 1.53875 * 106.60020 * 336.39323 * 24 23 22 26 26 H 0.96997 * 120.00191 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46901 * 59.99403 * 9 7 2 28 28 H 1.09005 * 109.47072 * 300.00353 * 9 7 2 29 29 H 1.08999 * 109.47074 * 60.00584 * 10 9 7 30 30 H 1.08995 * 109.47156 * 300.00274 * 10 9 7 31 31 H 1.00902 * 111.00165 * 303.95421 * 11 10 9 32 32 H 1.09001 * 109.47535 * 59.99606 * 12 11 10 33 33 H 1.09003 * 109.46623 * 299.99578 * 12 11 10 34 34 H 1.08005 * 119.98368 * 0.02562 * 14 13 12 35 35 H 1.08002 * 119.97787 * 179.97438 * 17 15 14 36 36 H 1.07998 * 120.02454 * 179.97438 * 18 17 15 37 37 H 1.09000 * 110.53571 * 33.51796 * 21 20 19 38 38 H 1.08995 * 110.75938 * 85.06333 * 22 21 20 39 39 H 1.09000 * 110.75702 * 321.69080 * 22 21 20 40 40 H 1.09001 * 110.48793 * 279.26739 * 23 22 21 41 41 H 1.09000 * 110.48734 * 156.61871 * 23 22 21 42 42 H 1.09004 * 110.03331 * 95.67055 * 24 23 22 43 43 H 1.08997 * 110.03211 * 217.05806 * 24 23 22 44 44 H 1.08997 * 110.03897 * 119.27687 * 25 24 23 45 45 H 1.09005 * 110.03479 * 240.67104 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0759 0.0005 13 6 1.6474 -7.3604 -0.0008 14 6 1.4585 -8.0566 1.1776 15 6 0.7397 -9.2387 1.1761 16 17 0.5089 -10.1149 2.6569 17 6 0.2048 -9.7238 -0.0045 18 6 0.3873 -9.0281 -1.1837 19 6 1.1079 -7.8425 -1.1841 20 8 1.2897 -7.1572 -2.3438 21 6 0.6115 -7.6492 -3.5013 22 6 1.4884 -8.6886 -4.2426 23 6 0.9283 -8.6411 -5.6859 24 6 0.6138 -7.1492 -5.9208 25 6 0.4123 -6.5184 -4.5318 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8906 30 1 2.8720 -3.6042 -0.8894 31 1 0.8741 -4.9846 0.7811 32 1 3.0628 -6.0349 0.8909 33 1 3.0639 -6.0347 -0.8891 34 1 1.8755 -7.6798 2.0999 35 1 -0.3557 -10.6470 -0.0038 36 1 -0.0299 -9.4071 -2.1049 37 1 -0.3478 -8.0869 -3.2251 38 1 1.3595 -9.6810 -3.8108 39 1 2.5371 -8.3918 -4.2253 40 1 0.0202 -9.2390 -5.7627 41 1 1.6770 -8.9896 -6.3973 42 1 1.4475 -6.6677 -6.4320 43 1 -0.2957 -7.0480 -6.5130 44 1 1.1482 -5.7311 -4.3688 45 1 -0.5951 -6.1105 -4.4494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344347743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:25 Heat of formation + Delta-G solvation = -42.059396 kcal Electronic energy + Delta-G solvation = -24639.087715 eV Core-core repulsion = 21067.452703 eV Total energy + Delta-G solvation = -3571.635012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.58857 -38.57333 -36.81540 -36.12422 -35.69119 -33.16001 -31.66866 -30.07689 -28.98082 -28.90323 -27.91512 -25.46629 -23.44169 -22.92608 -21.40214 -20.88992 -20.51478 -20.21239 -18.37703 -16.64775 -16.31753 -16.22006 -15.87715 -15.36843 -15.03260 -14.59526 -14.46454 -14.36611 -13.95519 -13.58997 -13.44668 -13.22357 -13.02146 -12.68148 -12.45257 -12.39128 -12.10052 -11.65217 -11.54114 -11.44147 -11.38465 -11.30369 -11.04472 -10.98546 -10.89522 -10.76229 -10.57183 -10.49042 -10.42986 -9.95400 -9.42129 -9.17851 -9.01630 -8.32318 -8.09847 -7.73479 -5.96870 -3.99269 1.09182 1.15689 2.08059 3.12582 3.33881 3.39830 3.43026 3.49311 4.27463 4.34603 4.46434 4.56182 4.57588 4.66534 4.87984 4.98477 5.01743 5.17170 5.21918 5.25003 5.26366 5.38075 5.39047 5.42857 5.52937 5.57677 5.67416 5.68527 5.84397 5.87093 5.93683 6.02928 6.07782 6.09837 6.10874 6.26798 6.39051 6.47549 6.54246 7.02521 7.39457 7.52664 7.77019 7.86618 8.00435 8.12841 8.47085 9.08140 9.64269 11.14553 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008607 B = 0.003367 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.196486 B = 8312.809972 C =11074.519862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.068 3.932 11 N -0.680 5.680 12 C 0.107 3.893 13 C -0.099 4.099 14 C -0.067 4.067 15 C -0.076 4.076 16 Cl -0.079 7.079 17 C -0.072 4.072 18 C -0.205 4.205 19 C 0.165 3.835 20 O -0.281 6.281 21 C 0.077 3.923 22 C -0.148 4.148 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.121 4.121 26 H 0.260 0.740 27 H 0.025 0.975 28 H 0.013 0.987 29 H 0.014 0.986 30 H 0.059 0.941 31 H 0.335 0.665 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 -23.650 -6.242 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.060 4.060 11 N -0.311 5.311 12 C -0.022 4.022 13 C -0.100 4.100 14 C -0.086 4.086 15 C -0.103 4.103 16 Cl -0.051 7.051 17 C -0.091 4.091 18 C -0.224 4.224 19 C 0.117 3.883 20 O -0.193 6.193 21 C 0.021 3.979 22 C -0.186 4.186 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.159 4.159 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.570 -23.408 -6.853 24.397 hybrid contribution 0.519 0.672 1.051 1.351 sum 1.088 -22.736 -5.802 23.490 Atomic orbital electron populations 1.69975 1.06021 1.26524 1.50746 1.24997 0.94826 0.99167 0.95356 0.86600 0.79812 0.83518 0.78092 1.20655 1.21250 1.19924 1.21182 0.92975 0.91031 1.50741 0.92780 1.19054 0.94012 0.90360 0.97694 1.22158 0.96967 0.88311 0.98603 1.60614 1.19371 1.01463 1.49656 1.20686 0.93401 0.87122 1.00983 1.19237 1.02607 0.98219 0.89976 1.20812 0.97053 0.92801 0.97937 1.20659 1.05735 0.96296 0.87574 1.98350 1.96225 1.75880 1.34607 1.20746 0.98300 0.99670 0.90403 1.21201 1.05312 0.96741 0.99178 1.18831 0.93207 0.89783 0.86439 1.86297 1.66461 1.51647 1.14943 1.23404 0.95060 0.95307 0.84148 1.23059 1.00866 0.98888 0.95767 1.22275 1.00880 0.96785 0.96092 1.22097 1.02007 0.95280 0.96593 1.22161 1.03546 0.97758 0.92399 0.93035 0.95657 0.96866 0.96734 0.92296 0.84809 0.94988 0.90041 0.84557 0.85069 0.84643 0.90363 0.91201 0.90097 0.91454 0.91216 0.91268 0.91411 0.89576 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.69 5.23 -27.89 -0.15 0.55 16 10 C 0.07 1.45 5.62 -3.82 -0.02 1.43 16 11 N -0.68 -12.53 6.49 -115.05 -0.75 -13.28 16 12 C 0.11 1.63 5.47 -4.97 -0.03 1.61 16 13 C -0.10 -1.36 5.41 -104.48 -0.56 -1.93 16 14 C -0.07 -0.83 9.45 -39.57 -0.37 -1.20 16 15 C -0.08 -0.88 6.32 -39.48 -0.25 -1.13 16 16 Cl -0.08 -0.85 28.95 -51.86 -1.50 -2.36 16 17 C -0.07 -0.76 9.82 -39.57 -0.39 -1.15 16 18 C -0.21 -2.25 8.84 -39.44 -0.35 -2.59 16 19 C 0.16 2.18 6.64 -39.23 -0.26 1.92 16 20 O -0.28 -3.88 9.08 -19.50 -0.18 -4.06 16 21 C 0.08 0.82 2.68 -25.07 -0.07 0.75 16 22 C -0.15 -1.27 6.38 -24.74 -0.16 -1.43 16 23 C -0.12 -0.88 6.83 -25.07 -0.17 -1.06 16 24 C -0.12 -1.00 6.80 -25.61 -0.17 -1.17 16 25 C -0.12 -1.29 6.56 -25.61 -0.17 -1.45 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.33 6.07 8.72 -39.29 -0.34 5.72 16 32 H 0.03 0.46 8.01 -51.93 -0.42 0.04 16 33 H 0.08 1.28 7.85 -51.93 -0.41 0.87 16 34 H 0.14 1.54 8.04 -52.48 -0.42 1.12 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.14 1.19 5.48 -52.49 -0.29 0.90 16 37 H 0.08 0.76 6.28 -51.93 -0.33 0.43 16 38 H 0.07 0.53 7.59 -51.93 -0.39 0.14 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 1.07 8.07 -51.93 -0.42 0.66 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -30.78 380.85 -11.71 -42.49 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.21 Total: 1.62 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -3.53 Total: -20.53 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.01 Total: -39.72 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.18 Total: -4.06 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.78 -11.71 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344347743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.429 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds