Wall clock time and date at job start Tue Mar 31 2020 14:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99629 * 2 1 4 4 H 1.48494 * 109.46964 * 269.99437 * 3 2 1 5 5 H 1.48496 * 109.47305 * 29.99742 * 3 2 1 6 6 H 1.48505 * 109.46822 * 149.99281 * 3 2 1 7 7 C 1.37874 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00310 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47373 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46951 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99774 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47177 * 180.02562 * 12 11 10 14 14 C 1.38160 * 120.01769 * 260.18574 * 13 12 11 15 15 C 1.38347 * 120.04474 * 180.25582 * 14 13 12 16 16 Cl 1.73596 * 119.96291 * 179.76685 * 15 14 13 17 17 C 1.38391 * 120.08020 * 359.78758 * 15 14 13 18 18 C 1.38125 * 120.04435 * 359.97438 * 17 15 14 19 19 C 1.38696 * 120.02461 * 79.99251 * 13 12 11 20 20 O 1.35923 * 120.04500 * 0.02562 * 19 13 12 21 21 C 1.42893 * 117.00414 * 185.21985 * 20 19 13 22 22 C 1.54881 * 110.48853 * 270.90317 * 21 20 19 23 23 C 1.54894 * 102.75092 * 203.37749 * 22 21 20 24 24 C 1.54270 * 104.19456 * 37.94156 * 23 22 21 25 25 C 1.53875 * 106.60020 * 336.39323 * 24 23 22 26 26 H 0.96997 * 120.00191 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46901 * 59.99403 * 9 7 2 28 28 H 1.09005 * 109.47072 * 300.00353 * 9 7 2 29 29 H 1.08999 * 109.47074 * 60.00584 * 10 9 7 30 30 H 1.08995 * 109.47156 * 300.00274 * 10 9 7 31 31 H 1.00902 * 111.00165 * 303.95421 * 11 10 9 32 32 H 1.09001 * 109.47535 * 59.99606 * 12 11 10 33 33 H 1.09003 * 109.46623 * 299.99578 * 12 11 10 34 34 H 1.08005 * 119.98368 * 0.02562 * 14 13 12 35 35 H 1.08002 * 119.97787 * 179.97438 * 17 15 14 36 36 H 1.07998 * 120.02454 * 179.97438 * 18 17 15 37 37 H 1.09000 * 110.53571 * 33.51796 * 21 20 19 38 38 H 1.08995 * 110.75938 * 85.06333 * 22 21 20 39 39 H 1.09000 * 110.75702 * 321.69080 * 22 21 20 40 40 H 1.09001 * 110.48793 * 279.26739 * 23 22 21 41 41 H 1.09000 * 110.48734 * 156.61871 * 23 22 21 42 42 H 1.09004 * 110.03331 * 95.67055 * 24 23 22 43 43 H 1.08997 * 110.03211 * 217.05806 * 24 23 22 44 44 H 1.08997 * 110.03897 * 119.27687 * 25 24 23 45 45 H 1.09005 * 110.03479 * 240.67104 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0759 0.0005 13 6 1.6474 -7.3604 -0.0008 14 6 1.4585 -8.0566 1.1776 15 6 0.7397 -9.2387 1.1761 16 17 0.5089 -10.1149 2.6569 17 6 0.2048 -9.7238 -0.0045 18 6 0.3873 -9.0281 -1.1837 19 6 1.1079 -7.8425 -1.1841 20 8 1.2897 -7.1572 -2.3438 21 6 0.6115 -7.6492 -3.5013 22 6 1.4884 -8.6886 -4.2426 23 6 0.9283 -8.6411 -5.6859 24 6 0.6138 -7.1492 -5.9208 25 6 0.4123 -6.5184 -4.5318 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8906 30 1 2.8720 -3.6042 -0.8894 31 1 0.8741 -4.9846 0.7811 32 1 3.0628 -6.0349 0.8909 33 1 3.0639 -6.0347 -0.8891 34 1 1.8755 -7.6798 2.0999 35 1 -0.3557 -10.6470 -0.0038 36 1 -0.0299 -9.4071 -2.1049 37 1 -0.3478 -8.0869 -3.2251 38 1 1.3595 -9.6810 -3.8108 39 1 2.5371 -8.3918 -4.2253 40 1 0.0202 -9.2390 -5.7627 41 1 1.6770 -8.9896 -6.3973 42 1 1.4475 -6.6677 -6.4320 43 1 -0.2957 -7.0480 -6.5130 44 1 1.1482 -5.7311 -4.3688 45 1 -0.5951 -6.1105 -4.4494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344347743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:24 Heat of formation + Delta-G solvation = -58.609565 kcal Electronic energy + Delta-G solvation = -24639.805385 eV Core-core repulsion = 21067.452703 eV Total energy + Delta-G solvation = -3572.352681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.50792 -39.44029 -37.75537 -37.36413 -36.75674 -35.13250 -33.09404 -31.11797 -30.52666 -29.65292 -28.74134 -27.04785 -25.11271 -23.85378 -22.53497 -22.33441 -21.58522 -21.03389 -19.28702 -18.50570 -17.63418 -17.19577 -16.72031 -16.56970 -16.33732 -16.11140 -15.55825 -15.39784 -15.28997 -14.91447 -14.38691 -14.20766 -14.03035 -13.92244 -13.87793 -13.71047 -13.30610 -13.10415 -12.84085 -12.60452 -12.49907 -12.39228 -12.24410 -12.11905 -11.99979 -11.92999 -11.86334 -11.52526 -11.39953 -11.35844 -11.26961 -11.22590 -10.56380 -10.04365 -9.26273 -9.02643 -8.19938 -6.31659 0.16973 0.22907 1.19451 1.40209 1.42076 1.53060 2.24981 2.40403 2.55330 3.13317 3.47351 3.54002 3.63482 3.68183 3.76812 3.93142 4.06697 4.11391 4.29035 4.38569 4.42721 4.47645 4.51194 4.53586 4.58565 4.63555 4.71486 4.74314 4.86220 4.90058 5.04786 5.05760 5.07823 5.14299 5.19686 5.21209 5.26178 5.33379 5.44049 5.44377 5.61884 5.67159 5.78083 6.12705 6.26446 6.51622 6.52395 6.85393 7.37546 8.92280 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008607 B = 0.003367 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.196486 B = 8312.809972 C =11074.519862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.034 3.966 10 C 0.087 3.913 11 N -0.686 5.686 12 C 0.114 3.886 13 C -0.120 4.120 14 C -0.069 4.069 15 C -0.083 4.083 16 Cl -0.071 7.071 17 C -0.064 4.064 18 C -0.200 4.200 19 C 0.150 3.850 20 O -0.308 6.308 21 C 0.070 3.930 22 C -0.142 4.142 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.126 4.126 26 H 0.264 0.736 27 H -0.008 1.008 28 H -0.009 1.009 29 H 0.021 0.979 30 H 0.055 0.945 31 H 0.336 0.664 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -25.216 -6.620 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.003 4.003 10 C -0.042 4.042 11 N -0.317 5.317 12 C -0.014 4.014 13 C -0.122 4.122 14 C -0.088 4.088 15 C -0.110 4.110 16 Cl -0.043 7.043 17 C -0.083 4.083 18 C -0.219 4.219 19 C 0.103 3.897 20 O -0.221 6.221 21 C 0.014 3.986 22 C -0.180 4.180 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.164 4.164 26 H 0.073 0.927 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.160 0.840 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.927 -25.000 -7.233 26.042 hybrid contribution 0.350 1.096 1.179 1.647 sum 1.277 -23.904 -6.054 24.692 Atomic orbital electron populations 1.70114 1.07849 1.27788 1.51423 1.25979 0.95763 1.03372 0.94585 0.85417 0.78648 0.78262 0.78530 1.19740 1.20639 1.18662 1.21607 0.93530 0.92213 1.50939 0.92138 1.18889 0.94238 0.92273 0.94900 1.21760 0.95562 0.88189 0.98667 1.60501 1.19995 1.01288 1.49921 1.20601 0.93082 0.86746 1.01003 1.19129 1.04028 0.97962 0.91051 1.20879 0.97127 0.93132 0.97668 1.20778 1.05691 0.96174 0.88371 1.98354 1.96159 1.75549 1.34214 1.21083 0.97354 1.00217 0.89652 1.21435 1.04353 0.95687 1.00375 1.19045 0.93797 0.90695 0.86129 1.86264 1.67203 1.52764 1.15876 1.23637 0.95910 0.95703 0.83333 1.23019 0.99694 0.98769 0.96511 1.22282 1.01873 0.95938 0.95236 1.22091 1.02585 0.96042 0.94942 1.22202 1.02263 0.97517 0.94410 0.92747 0.98987 0.99110 0.96107 0.92618 0.84691 0.93822 0.90938 0.83963 0.82374 0.82297 0.89188 0.89665 0.91437 0.89814 0.90033 0.91478 0.90175 0.92449 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.90 5.23 29.85 0.16 2.06 16 10 C 0.09 3.83 5.62 86.30 0.49 4.32 16 11 N -0.69 -26.07 6.49 -517.92 -3.36 -29.43 16 12 C 0.11 3.54 5.47 85.56 0.47 4.01 16 13 C -0.12 -3.29 5.41 -19.77 -0.11 -3.40 16 14 C -0.07 -1.65 9.45 22.28 0.21 -1.44 16 15 C -0.08 -1.79 6.32 22.33 0.14 -1.65 16 16 Cl -0.07 -1.41 28.95 -2.72 -0.08 -1.49 16 17 C -0.06 -1.19 9.82 22.28 0.22 -0.98 16 18 C -0.20 -3.97 8.84 22.36 0.20 -3.77 16 19 C 0.15 3.91 6.64 22.50 0.15 4.06 16 20 O -0.31 -8.65 9.08 -92.68 -0.84 -9.49 16 21 C 0.07 1.45 2.68 31.67 0.08 1.54 16 22 C -0.14 -2.24 6.38 31.88 0.20 -2.03 16 23 C -0.12 -1.42 6.83 31.67 0.22 -1.20 16 24 C -0.12 -1.85 6.80 31.32 0.21 -1.63 16 25 C -0.13 -2.76 6.56 31.32 0.21 -2.56 16 26 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.34 12.57 8.72 -89.69 -0.78 11.78 16 32 H 0.04 1.24 8.01 -2.39 -0.02 1.22 16 33 H 0.07 2.35 7.85 -2.39 -0.02 2.34 16 34 H 0.14 3.12 8.04 -2.91 -0.02 3.09 16 35 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.16 2.32 5.48 -2.91 -0.02 2.30 16 37 H 0.09 1.61 6.28 -2.39 -0.01 1.60 16 38 H 0.08 1.07 7.59 -2.39 -0.02 1.06 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.56 8.07 -2.39 -0.02 1.54 16 45 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -67.49 380.85 1.77 -65.73 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.20 Total: 19.12 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 3.54 Total: -33.77 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -3.08 Total: -87.04 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.84 Total: -9.49 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -67.49 1.77 -65.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344347743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.119 kcal (2) G-P(sol) polarization free energy of solvation -67.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds