Wall clock time and date at job start Tue Mar 31 2020 14:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38422 * 119.84072 * 2 1 4 4 C 1.37901 * 120.18280 * 179.97438 * 3 2 1 5 5 C 1.39625 * 119.86152 * 0.30803 * 4 3 2 6 6 C 1.47774 * 120.15018 * 179.70055 * 5 4 3 7 7 O 1.21566 * 119.99599 * 179.97438 * 6 5 4 8 8 N 1.34769 * 120.00445 * 359.97438 * 6 5 4 9 9 C 1.46496 * 120.00427 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47410 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47479 * 300.00756 * 10 9 8 12 12 C 1.53005 * 109.47018 * 60.00616 * 10 9 8 13 13 C 1.53001 * 109.47532 * 180.02562 * 10 9 8 14 14 C 1.50694 * 109.47433 * 180.02562 * 13 10 9 15 15 H 1.07994 * 120.00180 * 359.97438 * 14 13 10 16 16 C 1.37883 * 119.99858 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99562 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00199 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47162 * 89.99625 * 18 16 14 20 20 H 1.48496 * 109.46983 * 209.99841 * 18 16 14 21 21 H 1.48507 * 109.46998 * 330.00087 * 18 16 14 22 22 C 1.39689 * 119.69118 * 359.48236 * 5 4 3 23 23 Cl 1.73603 * 120.09383 * 180.23777 * 22 5 4 24 24 C 1.38154 * 119.81514 * 0.46709 * 22 5 4 25 25 C 1.50704 * 119.93746 * 179.76487 * 24 22 5 26 26 H 1.08992 * 109.47232 * 89.99777 * 1 2 3 27 27 H 1.08996 * 109.47323 * 210.00393 * 1 2 3 28 28 H 1.09003 * 109.47119 * 329.99924 * 1 2 3 29 29 H 1.08001 * 119.90875 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.06540 * 180.02562 * 4 3 2 31 31 H 0.97005 * 120.00217 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47602 * 300.00768 * 9 8 6 33 33 H 1.09002 * 109.46587 * 60.00605 * 9 8 6 34 34 H 1.08995 * 109.47471 * 59.99531 * 11 10 9 35 35 H 1.09004 * 109.46947 * 179.97438 * 11 10 9 36 36 H 1.09007 * 109.46715 * 299.99505 * 11 10 9 37 37 H 1.09001 * 109.47485 * 59.99716 * 12 10 9 38 38 H 1.08997 * 109.47665 * 180.02562 * 12 10 9 39 39 H 1.09009 * 109.46638 * 299.99904 * 12 10 9 40 40 H 1.09008 * 109.46847 * 300.00837 * 13 10 9 41 41 H 1.08999 * 109.47274 * 59.99931 * 13 10 9 42 42 H 0.97002 * 119.99172 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.47321 * 270.03020 * 25 24 22 44 44 H 1.09001 * 109.47131 * 30.02239 * 25 24 22 45 45 H 1.08991 * 109.47259 * 150.02336 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2007 0.0000 4 6 3.5748 1.2089 0.0005 5 6 4.2772 0.0022 -0.0054 6 6 5.7549 0.0036 -0.0116 7 8 6.3637 -1.0486 -0.0163 8 7 6.4278 1.1714 -0.0120 9 6 7.8927 1.1727 -0.0175 10 6 8.4014 2.6157 -0.0174 11 6 7.8860 3.3383 -1.2635 12 6 7.8956 3.3347 1.2349 13 6 9.9314 2.6171 -0.0238 14 6 10.4324 4.0384 -0.0230 15 1 9.7299 4.8586 -0.0189 16 6 11.7878 4.2915 -0.0288 17 7 12.2250 5.5319 -0.0286 18 14 13.0030 2.8728 -0.0367 19 1 13.3186 2.4992 -1.4389 20 1 14.2490 3.2845 0.6584 21 1 12.4072 1.7069 0.6641 22 6 3.5766 -1.2062 -0.0009 23 17 4.4394 -2.7127 -0.0021 24 6 2.1951 -1.1993 -0.0004 25 6 1.4364 -2.5014 -0.0009 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6517 2.1336 0.0004 30 1 4.1103 2.1468 0.0010 31 1 5.9420 2.0110 -0.0078 32 1 8.2600 0.6575 0.8701 33 1 8.2531 0.6610 -0.9099 34 1 6.7960 3.3374 -1.2594 35 1 8.2481 4.3665 -1.2631 36 1 8.2464 2.8261 -2.1557 37 1 8.2627 2.8199 2.1228 38 1 8.2575 4.3628 1.2349 39 1 6.8055 3.3336 1.2391 40 1 10.2989 2.1021 0.8639 41 1 10.2915 2.1050 -0.9161 42 1 13.1785 5.7099 -0.0323 43 1 1.2536 -2.8150 -1.0287 44 1 2.0225 -3.2636 0.5125 45 1 0.4846 -2.3676 0.5129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345883111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:08 Heat of formation + Delta-G solvation = -51.729969 kcal Electronic energy + Delta-G solvation = -24893.896615 eV Core-core repulsion = 21321.842255 eV Total energy + Delta-G solvation = -3572.054360 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.44261 -40.04851 -38.60835 -37.41267 -35.34029 -34.61277 -33.77518 -32.84178 -29.83674 -28.93152 -28.25178 -27.99336 -26.88959 -24.57940 -23.20689 -22.97275 -21.09853 -19.92844 -18.92232 -18.51001 -17.49245 -16.74253 -16.48372 -16.46889 -16.11617 -15.57391 -15.52944 -15.22115 -15.04217 -14.87461 -14.35573 -14.20659 -14.01266 -13.96548 -13.74256 -13.57762 -13.23660 -13.04900 -12.92514 -12.85484 -12.60724 -12.57762 -12.31318 -12.22237 -12.18299 -12.06508 -11.92183 -11.76828 -11.52387 -11.23071 -10.92554 -10.70821 -10.56591 -10.13232 -9.68909 -9.64683 -8.22908 -6.22575 -0.31644 0.14541 1.18342 1.34898 1.37991 1.47815 1.79802 2.13837 2.38453 2.67008 3.12653 3.57920 3.63078 3.86845 3.91397 4.04913 4.07149 4.09486 4.15549 4.36293 4.51914 4.63640 4.68415 4.69790 4.71207 4.78319 4.82852 4.92157 4.93947 5.00955 5.07556 5.08935 5.13069 5.20366 5.28711 5.31623 5.34271 5.40242 5.45411 5.49381 5.55068 5.68900 5.75978 5.78835 6.37614 6.52922 6.84146 7.20053 7.40122 8.92585 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024058 B = 0.002743 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.567403 B =10205.454955 C =11162.050597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.048 4.048 3 C -0.117 4.117 4 C -0.076 4.076 5 C -0.153 4.153 6 C 0.544 3.456 7 O -0.559 6.559 8 N -0.705 5.705 9 C 0.140 3.860 10 C -0.057 4.057 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.004 4.004 14 C -0.500 4.500 15 H 0.055 0.945 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.932 3.068 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.253 1.253 22 C -0.007 4.007 23 Cl -0.054 7.054 24 C -0.098 4.098 25 C -0.121 4.121 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.168 0.832 30 H 0.154 0.846 31 H 0.410 0.590 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.262 0.738 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.319 -11.875 0.069 31.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.049 4.049 3 C -0.135 4.135 4 C -0.095 4.095 5 C -0.157 4.157 6 C 0.332 3.668 7 O -0.439 6.439 8 N -0.358 5.358 9 C 0.016 3.984 10 C -0.058 4.058 11 C -0.181 4.181 12 C -0.181 4.181 13 C -0.042 4.042 14 C -0.538 4.538 15 H 0.073 0.927 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.757 3.243 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.177 1.177 22 C -0.035 4.035 23 Cl -0.025 7.025 24 C -0.099 4.099 25 C -0.177 4.177 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.186 0.814 30 H 0.171 0.829 31 H 0.249 0.751 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.032 0.968 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -28.627 -12.659 0.069 31.301 hybrid contribution 1.624 -0.042 -0.043 1.625 sum -27.003 -12.701 0.026 29.841 Atomic orbital electron populations 1.21045 0.87716 1.04787 1.04057 1.20348 0.98309 0.91154 0.95098 1.21477 0.93182 0.99400 0.99417 1.21546 0.95431 0.96201 0.96320 1.19756 0.92429 0.94139 1.09370 1.18545 0.87763 0.83878 0.76638 1.90834 1.70545 1.31904 1.50619 1.45859 1.07208 1.08475 1.74299 1.21295 0.79087 0.96945 1.01031 1.20553 0.95695 0.92543 0.96988 1.21712 0.99968 1.00418 0.96036 1.21709 0.99996 1.00434 0.95981 1.19573 0.92844 0.95693 0.96095 1.21354 0.91840 0.92434 1.48186 0.92729 1.25806 1.00610 0.97429 0.95129 1.70037 1.14761 1.20707 1.53682 0.85930 0.78679 0.80857 0.78808 1.19772 1.21440 1.17724 1.21143 0.92632 0.86952 1.02768 1.98388 1.77078 1.30793 1.96225 1.19893 0.90236 0.98139 1.01588 1.21003 1.00691 0.92266 1.03771 0.89240 0.89739 0.89346 0.81446 0.82883 0.75119 0.92689 0.92629 0.91295 0.93326 0.93739 0.93772 0.93317 0.91288 0.96791 0.96932 0.92863 0.89772 0.91796 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.59 71.24 0.68 0.06 16 2 C -0.05 -0.60 5.88 -19.81 -0.12 -0.72 16 3 C -0.12 -1.39 9.68 22.23 0.22 -1.18 16 4 C -0.08 -1.25 9.54 22.52 0.21 -1.04 16 5 C -0.15 -3.70 5.88 -20.07 -0.12 -3.81 16 6 C 0.54 16.40 7.77 86.77 0.67 17.08 16 7 O -0.56 -21.00 13.97 -3.92 -0.05 -21.05 16 8 N -0.70 -19.06 4.91 -466.06 -2.29 -21.35 16 9 C 0.14 4.61 4.56 86.38 0.39 5.00 16 10 C -0.06 -2.03 0.54 -52.18 -0.03 -2.06 16 11 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 12 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 13 C 0.00 -0.19 3.11 29.85 0.09 -0.10 16 14 C -0.50 -27.09 8.21 25.60 0.21 -26.88 16 15 H 0.05 3.16 5.92 -2.91 -0.02 3.15 16 16 C 0.01 0.38 5.47 84.66 0.46 0.84 16 17 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 18 Si 0.93 44.78 27.47 68.60 1.88 46.66 16 19 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 21 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 22 C -0.01 -0.17 6.35 22.60 0.14 -0.03 16 23 Cl -0.05 -1.50 24.36 -2.72 -0.07 -1.56 16 24 C -0.10 -1.67 5.88 -19.88 -0.12 -1.79 16 25 C -0.12 -1.49 9.20 71.24 0.66 -0.84 16 26 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.08 0.31 5.93 -2.39 -0.01 0.30 16 28 H 0.09 0.23 8.08 -2.39 -0.02 0.21 16 29 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.15 1.82 6.41 -2.91 -0.02 1.80 16 31 H 0.41 8.65 4.20 -92.70 -0.39 8.26 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.71 6.86 -2.39 -0.02 1.70 16 35 H 0.05 1.85 6.62 -2.38 -0.02 1.83 16 36 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 39 H 0.07 1.72 6.86 -2.38 -0.02 1.70 16 40 H 0.01 0.64 7.20 -2.38 -0.02 0.62 16 41 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 42 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.94 6.90 -2.39 -0.02 0.92 16 45 H 0.10 0.71 5.93 -2.39 -0.01 0.69 16 Total: -1.00 -71.99 363.47 4.87 -67.13 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.57 Total: 10.93 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 4.53 Total: -22.48 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.99 Total: -79.62 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.05 Total: -21.05 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.56 kcal Total: -71.99 4.87 -67.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345883111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.395 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds