Wall clock time and date at job start Tue Mar 31 2020 14:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38264 * 119.98848 * 2 1 4 4 C 1.38222 * 120.02373 * 179.72587 * 3 2 1 5 5 C 1.38238 * 120.01398 * 0.55044 * 4 3 2 6 6 C 1.50696 * 120.00712 * 179.74942 * 5 4 3 7 7 C 1.50706 * 109.47259 * 264.72379 * 6 5 4 8 8 O 1.21283 * 119.99503 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00081 * 179.72770 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47161 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46879 * 299.99673 * 11 10 9 13 13 C 1.52996 * 109.47708 * 59.99568 * 11 10 9 14 14 C 1.52996 * 109.47231 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.47380 * 179.97438 * 14 11 10 16 16 H 1.07994 * 119.99617 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00059 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99745 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00107 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46755 * 59.99935 * 19 17 15 21 21 H 1.48496 * 109.47089 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47151 * 300.00141 * 19 17 15 23 23 C 1.38327 * 119.98479 * 359.47361 * 5 4 3 24 24 Cl 1.73596 * 120.01495 * 180.27377 * 23 5 4 25 25 C 1.38192 * 119.99737 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47011 * 269.97198 * 1 2 3 27 27 H 1.08993 * 109.47376 * 29.97827 * 1 2 3 28 28 H 1.09005 * 109.46911 * 149.97504 * 1 2 3 29 29 H 1.07996 * 119.98980 * 0.02562 * 3 2 1 30 30 H 1.08007 * 119.99489 * 180.29975 * 4 3 2 31 31 H 1.09001 * 109.47545 * 144.72719 * 6 5 4 32 32 H 1.08998 * 109.47669 * 24.72662 * 6 5 4 33 33 H 0.96998 * 120.00525 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 35 35 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 36 36 H 1.08992 * 109.47188 * 60.00087 * 12 11 10 37 37 H 1.09004 * 109.46863 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.46825 * 299.99655 * 12 11 10 39 39 H 1.09004 * 109.46998 * 59.99724 * 13 11 10 40 40 H 1.08991 * 109.47497 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.46958 * 300.00271 * 13 11 10 42 42 H 1.08999 * 109.47343 * 300.00090 * 14 11 10 43 43 H 1.09010 * 109.47369 * 59.99437 * 14 11 10 44 44 H 0.97005 * 119.99568 * 180.02562 * 18 17 15 45 45 H 1.07995 * 120.00641 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1984 0.0057 5 6 4.2725 0.0019 0.0000 6 6 5.7795 0.0030 0.0005 7 6 6.2825 -0.1202 -1.4148 8 8 5.4947 -0.2004 -2.3334 9 7 7.6076 -0.1350 -1.6601 10 6 8.0965 -0.2542 -3.0361 11 6 9.6264 -0.2457 -3.0362 12 6 10.1291 1.0653 -2.4280 13 6 10.1432 -1.4234 -2.2075 14 6 10.1370 -0.3708 -4.4730 15 6 11.6440 -0.3618 -4.4732 16 1 12.1836 -0.2750 -3.5417 17 6 12.3339 -0.4632 -5.6626 18 7 11.6767 -0.5683 -6.7970 19 14 14.2018 -0.4513 -5.6630 20 1 14.7042 -1.5939 -4.8583 21 1 14.6974 -0.5728 -7.0575 22 1 14.6889 0.8216 -5.0732 23 6 3.5816 -1.1965 -0.0005 24 17 4.4502 -2.6996 -0.0006 25 6 2.1979 -1.1968 -0.0005 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5143 29 1 1.6577 2.1326 0.0004 30 1 4.1196 2.1341 0.0106 31 1 6.1433 -0.8387 0.5898 32 1 6.1420 0.9345 0.4351 33 1 8.2376 -0.0661 -0.9259 34 1 7.7380 -1.1879 -3.4694 35 1 7.7287 0.5851 -3.6263 36 1 9.7654 1.1540 -1.4044 37 1 11.2192 1.0715 -2.4285 38 1 9.7611 1.9043 -3.0185 39 1 9.7850 -2.3574 -2.6407 40 1 11.2331 -1.4171 -2.2072 41 1 9.7794 -1.3347 -1.1838 42 1 9.7789 -1.3048 -4.9059 43 1 9.7689 0.4681 -5.0638 44 1 12.1621 -0.6400 -7.6338 45 1 1.6580 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345895720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:04 Heat of formation + Delta-G solvation = -49.987530 kcal Electronic energy + Delta-G solvation = -24530.417731 eV Core-core repulsion = 20958.438929 eV Total energy + Delta-G solvation = -3571.978802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20376 -39.10207 -37.08067 -36.61852 -33.96625 -33.56725 -32.08793 -30.96354 -30.03331 -27.16900 -26.55956 -26.51121 -25.10283 -23.06346 -22.84482 -21.34593 -20.14316 -18.33049 -16.81728 -16.65027 -16.34296 -16.28884 -15.70184 -15.05147 -14.97480 -14.49590 -14.24816 -14.03219 -13.73444 -13.63460 -13.20893 -13.02799 -12.83285 -12.77193 -12.67514 -12.31553 -12.05438 -11.89056 -11.80960 -11.45345 -11.40251 -11.13263 -11.00040 -10.89375 -10.87028 -10.62814 -10.39767 -10.26654 -9.87070 -9.79338 -9.19039 -9.01775 -8.93372 -8.69022 -8.68570 -8.35417 -5.99506 -4.00923 0.94049 1.04486 2.00953 2.85342 3.23444 3.32005 3.37504 3.38594 3.65387 4.34761 4.45336 4.49498 4.62966 4.83697 4.93399 5.04538 5.13912 5.22876 5.27511 5.35442 5.35860 5.48103 5.53884 5.60041 5.63683 5.75470 5.78449 5.96137 6.15534 6.17544 6.23144 6.24330 6.30408 6.40245 6.57859 6.59274 6.63008 6.78111 7.06538 7.07715 7.13330 7.64215 7.76809 7.77021 7.99083 8.40296 8.47202 9.03649 9.62025 11.11881 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.002342 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.975419 B =11954.045069 C =12172.638992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.116 4.116 4 C -0.092 4.092 5 C -0.057 4.057 6 C -0.110 4.110 7 C 0.511 3.489 8 O -0.535 6.535 9 N -0.722 5.722 10 C 0.130 3.870 11 C -0.072 4.072 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.015 4.015 24 Cl -0.066 7.066 25 C -0.112 4.112 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.260 0.740 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.796 1.908 18.796 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.079 4.079 3 C -0.134 4.134 4 C -0.110 4.110 5 C -0.058 4.058 6 C -0.150 4.150 7 C 0.296 3.704 8 O -0.411 6.411 9 N -0.374 5.374 10 C 0.007 3.993 11 C -0.073 4.073 12 C -0.184 4.184 13 C -0.184 4.184 14 C -0.001 4.001 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.042 4.042 24 Cl -0.037 7.037 25 C -0.131 4.131 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.233 0.767 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.251 1.689 17.912 26.349 hybrid contribution 1.540 -0.139 0.132 1.552 sum -17.711 1.549 18.044 25.331 Atomic orbital electron populations 1.20790 0.90582 1.03149 1.02448 1.19835 0.96307 0.92459 0.99271 1.21066 0.93995 0.97764 1.00550 1.20959 0.94212 0.96968 0.98881 1.19134 0.94405 0.91862 1.00426 1.20750 0.92351 1.05502 0.96407 1.20269 0.82714 0.76934 0.90440 1.90722 1.55295 1.49057 1.46043 1.46178 1.06329 1.74255 1.10643 1.21607 0.95101 1.01588 0.81028 1.20897 0.90742 0.95093 1.00523 1.21761 1.02322 0.96866 0.97469 1.21761 1.02261 0.97752 0.96661 1.19087 0.95893 0.97402 0.87760 1.21141 0.91357 1.49937 0.92530 0.92320 1.25022 0.98161 0.95572 0.95786 1.69960 1.35397 1.50328 0.97689 0.86704 0.86118 0.78491 0.76937 1.20336 1.21411 1.20333 1.20741 0.92382 0.86815 1.04227 1.98374 1.76764 1.31854 1.96734 1.20863 0.91727 0.98695 1.01767 0.90972 0.91222 0.91321 0.85452 0.85150 0.87682 0.87739 0.76729 0.91897 0.91905 0.95230 0.91446 0.93393 0.93385 0.91454 0.95229 0.96363 0.96375 0.92985 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.00 0.36 -0.35 16 2 C -0.08 -0.72 5.88 -104.63 -0.62 -1.34 16 3 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 4 C -0.09 -0.94 9.68 -39.59 -0.38 -1.32 16 5 C -0.06 -0.66 4.38 -104.59 -0.46 -1.12 16 6 C -0.11 -1.18 5.34 -29.03 -0.16 -1.34 16 7 C 0.51 7.55 7.82 -10.98 -0.09 7.46 16 8 O -0.53 -10.13 16.03 5.56 0.09 -10.04 16 9 N -0.72 -10.37 4.96 -60.29 -0.30 -10.67 16 10 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 11 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 12 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 13 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 14 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 15 C -0.51 -13.57 7.65 -34.44 -0.26 -13.84 16 16 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.01 -0.18 6.31 -39.50 -0.25 -0.43 16 24 Cl -0.07 -0.80 27.40 -51.86 -1.42 -2.23 16 25 C -0.11 -1.17 9.49 -39.55 -0.38 -1.54 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 31 H 0.11 1.00 7.13 -51.93 -0.37 0.63 16 32 H 0.10 0.82 8.05 -51.93 -0.42 0.41 16 33 H 0.40 4.73 6.16 -40.82 -0.25 4.47 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 37 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 41 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -32.11 379.12 -9.46 -41.57 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.94 Total: 1.22 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.32 Total: -16.00 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.44 Total: -36.44 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.42 Total: -2.23 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.11 -9.46 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345895720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.415 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds