Wall clock time and date at job start Tue Mar 31 2020 14:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38264 * 119.98848 * 2 1 4 4 C 1.38222 * 120.02373 * 179.72587 * 3 2 1 5 5 C 1.38238 * 120.01398 * 0.55044 * 4 3 2 6 6 C 1.50696 * 120.00712 * 179.74942 * 5 4 3 7 7 C 1.50706 * 109.47259 * 264.72379 * 6 5 4 8 8 O 1.21283 * 119.99503 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00081 * 179.72770 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47161 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46879 * 299.99673 * 11 10 9 13 13 C 1.52996 * 109.47708 * 59.99568 * 11 10 9 14 14 C 1.52996 * 109.47231 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.47380 * 179.97438 * 14 11 10 16 16 H 1.07994 * 119.99617 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00059 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99745 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00107 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46755 * 59.99935 * 19 17 15 21 21 H 1.48496 * 109.47089 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47151 * 300.00141 * 19 17 15 23 23 C 1.38327 * 119.98479 * 359.47361 * 5 4 3 24 24 Cl 1.73596 * 120.01495 * 180.27377 * 23 5 4 25 25 C 1.38192 * 119.99737 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47011 * 269.97198 * 1 2 3 27 27 H 1.08993 * 109.47376 * 29.97827 * 1 2 3 28 28 H 1.09005 * 109.46911 * 149.97504 * 1 2 3 29 29 H 1.07996 * 119.98980 * 0.02562 * 3 2 1 30 30 H 1.08007 * 119.99489 * 180.29975 * 4 3 2 31 31 H 1.09001 * 109.47545 * 144.72719 * 6 5 4 32 32 H 1.08998 * 109.47669 * 24.72662 * 6 5 4 33 33 H 0.96998 * 120.00525 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 35 35 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 36 36 H 1.08992 * 109.47188 * 60.00087 * 12 11 10 37 37 H 1.09004 * 109.46863 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.46825 * 299.99655 * 12 11 10 39 39 H 1.09004 * 109.46998 * 59.99724 * 13 11 10 40 40 H 1.08991 * 109.47497 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.46958 * 300.00271 * 13 11 10 42 42 H 1.08999 * 109.47343 * 300.00090 * 14 11 10 43 43 H 1.09010 * 109.47369 * 59.99437 * 14 11 10 44 44 H 0.97005 * 119.99568 * 180.02562 * 18 17 15 45 45 H 1.07995 * 120.00641 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1984 0.0057 5 6 4.2725 0.0019 0.0000 6 6 5.7795 0.0030 0.0005 7 6 6.2825 -0.1202 -1.4148 8 8 5.4947 -0.2004 -2.3334 9 7 7.6076 -0.1350 -1.6601 10 6 8.0965 -0.2542 -3.0361 11 6 9.6264 -0.2457 -3.0362 12 6 10.1291 1.0653 -2.4280 13 6 10.1432 -1.4234 -2.2075 14 6 10.1370 -0.3708 -4.4730 15 6 11.6440 -0.3618 -4.4732 16 1 12.1836 -0.2750 -3.5417 17 6 12.3339 -0.4632 -5.6626 18 7 11.6767 -0.5683 -6.7970 19 14 14.2018 -0.4513 -5.6630 20 1 14.7042 -1.5939 -4.8583 21 1 14.6974 -0.5728 -7.0575 22 1 14.6889 0.8216 -5.0732 23 6 3.5816 -1.1965 -0.0005 24 17 4.4502 -2.6996 -0.0006 25 6 2.1979 -1.1968 -0.0005 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5143 29 1 1.6577 2.1326 0.0004 30 1 4.1196 2.1341 0.0106 31 1 6.1433 -0.8387 0.5898 32 1 6.1420 0.9345 0.4351 33 1 8.2376 -0.0661 -0.9259 34 1 7.7380 -1.1879 -3.4694 35 1 7.7287 0.5851 -3.6263 36 1 9.7654 1.1540 -1.4044 37 1 11.2192 1.0715 -2.4285 38 1 9.7611 1.9043 -3.0185 39 1 9.7850 -2.3574 -2.6407 40 1 11.2331 -1.4171 -2.2072 41 1 9.7794 -1.3347 -1.1838 42 1 9.7789 -1.3048 -4.9059 43 1 9.7689 0.4681 -5.0638 44 1 12.1621 -0.6400 -7.6338 45 1 1.6580 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345895720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:03 Heat of formation + Delta-G solvation = -67.668496 kcal Electronic energy + Delta-G solvation = -24531.184436 eV Core-core repulsion = 20958.438929 eV Total energy + Delta-G solvation = -3572.745506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19800 -40.13175 -38.58581 -37.47522 -35.21651 -34.75109 -33.89730 -31.69721 -30.85274 -29.07346 -27.95198 -27.78401 -26.16482 -24.66984 -23.80170 -22.21950 -21.29488 -19.86094 -18.37441 -18.01637 -17.48714 -17.16819 -16.69211 -16.47172 -16.19111 -16.00937 -15.23786 -15.14320 -14.76506 -14.74006 -14.56671 -14.25653 -13.93232 -13.92034 -13.82115 -13.52569 -13.36368 -12.87004 -12.75640 -12.74559 -12.56295 -12.55152 -12.32162 -12.21961 -12.18803 -12.12852 -12.00104 -11.71790 -11.52715 -11.17084 -10.90112 -10.78365 -10.50697 -10.02819 -9.78148 -9.45982 -8.13768 -6.21829 0.17596 0.29901 1.16974 1.42437 1.44736 1.51921 1.70273 2.23072 2.44954 2.72998 3.20387 3.56864 3.78914 3.93024 3.98914 4.08565 4.09058 4.18506 4.23719 4.32103 4.42768 4.57176 4.65931 4.70266 4.73575 4.79344 4.84659 4.87735 4.93878 4.97658 5.11760 5.13366 5.22650 5.25593 5.41301 5.41698 5.48397 5.50540 5.54570 5.55759 5.58580 5.80830 5.89972 5.90591 6.30267 6.63294 6.93305 7.32462 7.45881 8.98568 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.002342 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.975419 B =11954.045069 C =12172.638992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.079 4.079 6 C -0.100 4.100 7 C 0.511 3.489 8 O -0.580 6.580 9 N -0.710 5.710 10 C 0.144 3.856 11 C -0.064 4.064 12 C -0.121 4.121 13 C -0.122 4.122 14 C 0.039 3.961 15 C -0.513 4.513 16 H 0.074 0.926 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.960 3.040 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.265 1.265 23 C -0.035 4.035 24 Cl -0.079 7.079 25 C -0.127 4.127 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.118 0.882 32 H 0.140 0.860 33 H 0.414 0.586 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.033 0.967 40 H 0.056 0.944 41 H 0.071 0.929 42 H -0.017 1.017 43 H -0.015 1.015 44 H 0.259 0.741 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.764 3.056 21.794 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.118 4.118 5 C -0.081 4.081 6 C -0.140 4.140 7 C 0.299 3.701 8 O -0.460 6.460 9 N -0.363 5.363 10 C 0.020 3.980 11 C -0.064 4.064 12 C -0.179 4.179 13 C -0.179 4.179 14 C 0.002 3.998 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.204 4.204 18 N -0.580 5.580 19 Si 0.785 3.215 20 H -0.192 1.192 21 H -0.218 1.218 22 H -0.190 1.190 23 C -0.062 4.062 24 Cl -0.050 7.050 25 C -0.145 4.145 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.171 0.829 30 H 0.167 0.833 31 H 0.136 0.864 32 H 0.158 0.842 33 H 0.252 0.748 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.001 0.999 43 H 0.003 0.997 44 H 0.068 0.932 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.203 2.840 20.966 28.573 hybrid contribution 1.402 -0.483 -0.812 1.691 sum -17.801 2.357 20.154 26.993 Atomic orbital electron populations 1.20854 0.88515 1.03854 1.03606 1.20228 0.97895 0.92055 0.97970 1.21447 0.93961 0.98843 0.99567 1.21291 0.94935 0.97235 0.98329 1.19346 0.94928 0.92249 1.01544 1.20765 0.92028 1.07887 0.93295 1.21010 0.82026 0.75308 0.91802 1.90707 1.56374 1.50967 1.47961 1.45959 1.06912 1.74096 1.09373 1.21146 0.94233 0.99665 0.82961 1.20693 0.91328 0.97204 0.97176 1.21696 1.01508 0.95012 0.99652 1.21700 1.01486 0.96177 0.98574 1.18977 0.95533 0.94166 0.91159 1.21560 0.92260 1.48337 0.92953 0.90838 1.25983 1.03395 0.95499 0.95521 1.70128 1.37408 1.52119 0.98383 0.85576 0.79935 0.79186 0.76803 1.19167 1.21786 1.19008 1.20999 0.93085 0.86638 1.05466 1.98359 1.77083 1.32671 1.96883 1.21110 0.91504 0.99805 1.02125 0.89469 0.90115 0.91052 0.82924 0.83290 0.86354 0.84180 0.74794 0.94241 0.93743 0.90821 0.92577 0.94433 0.94767 0.92510 0.90977 0.99880 0.99657 0.93203 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 71.24 0.71 -0.43 16 2 C -0.08 -1.35 5.88 -19.87 -0.12 -1.47 16 3 C -0.12 -1.93 9.70 22.27 0.22 -1.71 16 4 C -0.10 -1.82 9.68 22.27 0.22 -1.61 16 5 C -0.08 -1.73 4.38 -19.84 -0.09 -1.81 16 6 C -0.10 -1.91 5.34 29.10 0.16 -1.75 16 7 C 0.51 14.43 7.82 87.66 0.69 15.11 16 8 O -0.58 -22.12 16.03 -3.04 -0.05 -22.17 16 9 N -0.71 -19.16 4.96 -463.05 -2.30 -21.46 16 10 C 0.14 5.21 4.56 86.38 0.39 5.60 16 11 C -0.06 -2.40 0.54 -52.18 -0.03 -2.43 16 12 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 13 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 14 C 0.04 2.02 4.04 29.85 0.12 2.14 16 15 C -0.51 -27.57 7.65 25.60 0.20 -27.37 16 16 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 17 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 18 N -0.94 -57.61 13.29 21.45 0.28 -57.33 16 19 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 C -0.04 -0.82 6.31 22.32 0.14 -0.68 16 24 Cl -0.08 -1.89 27.40 -2.72 -0.07 -1.97 16 25 C -0.13 -2.55 9.49 22.29 0.21 -2.34 16 26 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 28 H 0.07 0.70 8.09 -2.38 -0.02 0.68 16 29 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 31 H 0.12 1.95 7.13 -2.39 -0.02 1.93 16 32 H 0.14 1.64 8.05 -2.39 -0.02 1.62 16 33 H 0.41 8.32 6.16 -92.71 -0.57 7.75 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 37 H 0.06 1.98 6.62 -2.39 -0.02 1.96 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 2.04 6.62 -2.39 -0.02 2.02 16 41 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 44 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 45 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -73.27 379.12 4.75 -68.52 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.42 Total: 14.32 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 4.44 Total: -25.64 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -2.01 Total: -78.78 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.07 Total: -1.97 kcal Total: -73.27 4.75 -68.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345895720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.850 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds