Wall clock time and date at job start Tue Mar 31 2020 14:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37921 * 119.93598 * 2 1 4 4 C 1.39589 * 119.86600 * 180.29686 * 3 2 1 5 5 C 1.47789 * 120.13244 * 179.68026 * 4 3 2 6 6 O 1.21555 * 119.99985 * 173.71159 * 5 4 3 7 7 N 1.34775 * 119.99651 * 353.70281 * 5 4 3 8 8 C 1.46502 * 120.00066 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47248 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46999 * 299.99740 * 9 8 7 11 11 C 1.53000 * 109.47537 * 59.99518 * 9 8 7 12 12 C 1.53002 * 109.46989 * 179.97438 * 9 8 7 13 13 C 1.50706 * 109.47047 * 179.97438 * 12 9 8 14 14 H 1.08002 * 119.99628 * 0.02562 * 13 12 9 15 15 C 1.37873 * 119.99858 * 180.02562 * 13 12 9 16 16 N 1.31514 * 120.00062 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99752 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47499 * 60.00149 * 17 15 13 19 19 H 1.48501 * 109.47249 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47380 * 300.00021 * 17 15 13 21 21 C 1.39635 * 119.73896 * 359.40231 * 4 3 2 22 22 C 1.50701 * 120.06812 * 180.29927 * 21 4 3 23 23 C 1.37871 * 119.86890 * 0.27362 * 21 4 3 24 24 C 1.38488 * 119.93504 * 179.67873 * 2 1 3 25 25 Cl 1.73602 * 119.86583 * 0.02562 * 24 2 1 26 26 H 1.09000 * 109.46884 * 270.32615 * 1 2 3 27 27 H 1.08997 * 109.46481 * 30.32204 * 1 2 3 28 28 H 1.09002 * 109.46947 * 150.32269 * 1 2 3 29 29 H 1.08000 * 120.06694 * 359.97438 * 3 2 1 30 30 H 0.97002 * 120.00025 * 0.02562 * 7 5 4 31 31 H 1.08991 * 109.47047 * 59.99839 * 8 7 5 32 32 H 1.09000 * 109.46675 * 299.99936 * 8 7 5 33 33 H 1.09003 * 109.46828 * 60.00013 * 10 9 8 34 34 H 1.08997 * 109.47309 * 180.02562 * 10 9 8 35 35 H 1.09005 * 109.46888 * 300.00215 * 10 9 8 36 36 H 1.09008 * 109.46620 * 59.99940 * 11 9 8 37 37 H 1.08997 * 109.47029 * 180.02562 * 11 9 8 38 38 H 1.08994 * 109.47099 * 300.00699 * 11 9 8 39 39 H 1.08992 * 109.46990 * 299.99727 * 12 9 8 40 40 H 1.08997 * 109.47021 * 60.00206 * 12 9 8 41 41 H 0.96998 * 119.99539 * 179.97438 * 16 15 13 42 42 H 1.08998 * 109.47488 * 83.45143 * 22 21 4 43 43 H 1.09001 * 109.47543 * 203.45425 * 22 21 4 44 44 H 1.09006 * 109.47235 * 323.45174 * 22 21 4 45 45 H 1.07995 * 119.93878 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1952 0.0000 4 6 3.5912 1.1935 -0.0063 5 6 4.3346 2.4708 -0.0134 6 8 5.5452 2.4700 0.0964 7 7 3.6703 3.6364 -0.1420 8 6 4.4072 4.9025 -0.1497 9 6 3.4237 6.0641 -0.3062 10 6 2.6591 5.9110 -1.6226 11 6 2.4352 6.0563 0.8616 12 6 4.1934 7.3864 -0.3135 13 6 3.2247 8.5305 -0.4683 14 1 2.1661 8.3341 -0.5526 15 6 3.6901 9.8279 -0.5024 16 7 4.9792 10.0670 -0.3993 17 14 2.4894 11.2460 -0.6936 18 1 1.5300 11.2387 0.4399 19 1 3.2364 12.5294 -0.7021 20 1 1.7471 11.0975 -1.9711 21 6 4.2824 -0.0197 0.0001 22 6 5.7894 -0.0302 0.0002 23 6 3.5835 -1.2081 0.0069 24 6 2.1981 -1.2001 0.0067 25 17 1.3249 -2.7005 0.0145 26 1 -0.3633 0.0058 1.0277 27 1 -0.3632 0.8871 -0.5188 28 1 -0.3633 -0.8929 -0.5088 29 1 1.6553 2.1305 -0.0004 30 1 2.7042 3.6369 -0.2294 31 1 5.1116 4.9078 -0.9813 32 1 4.9515 5.0117 0.7884 33 1 2.1108 4.9690 -1.6168 34 1 1.9588 6.7388 -1.7343 35 1 3.3634 5.9165 -2.4545 36 1 2.9800 6.1653 1.7994 37 1 1.7344 6.8836 0.7498 38 1 1.8870 5.1143 0.8673 39 1 4.7377 7.4952 0.6244 40 1 4.8978 7.3922 -1.1453 41 1 5.3065 10.9798 -0.4237 42 1 6.1535 0.0899 1.0206 43 1 6.1462 -0.9776 -0.4038 44 1 6.1585 0.7897 -0.6161 45 1 4.1169 -2.1471 0.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345979874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:10 Heat of formation + Delta-G solvation = -45.246601 kcal Electronic energy + Delta-G solvation = -24867.088623 eV Core-core repulsion = 21295.315403 eV Total energy + Delta-G solvation = -3571.773220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62453 -38.90354 -37.23702 -36.71138 -34.29998 -33.56114 -32.27263 -31.14588 -29.49743 -27.17874 -26.56174 -26.39748 -25.25812 -24.01468 -22.88337 -21.43754 -20.28896 -18.41800 -17.27274 -16.59162 -16.39447 -16.15092 -15.43058 -15.23028 -14.88963 -14.51124 -14.48212 -13.77855 -13.73354 -13.23503 -13.20455 -13.13225 -12.95587 -12.78558 -12.58100 -12.44950 -12.19799 -12.09175 -11.98199 -11.74955 -11.43696 -11.19275 -11.07662 -11.03666 -10.89707 -10.66714 -10.44737 -10.30057 -9.91975 -9.67697 -9.21864 -9.19150 -8.96906 -8.93988 -8.66162 -8.38073 -6.02212 -4.03762 0.43536 0.90767 1.73238 2.67364 3.28783 3.30238 3.35961 3.37380 3.53198 4.30210 4.35552 4.43000 4.57887 4.71623 4.95753 5.08173 5.20099 5.28964 5.33173 5.38996 5.42412 5.53587 5.57378 5.68852 5.69299 5.72938 5.74100 5.94639 5.99039 6.11090 6.17217 6.21302 6.29110 6.33892 6.42988 6.53555 6.58306 6.70635 7.01129 7.03048 7.07921 7.60239 7.64230 7.72850 7.96029 8.29781 8.38098 9.00682 9.59467 11.09186 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.002512 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.801739 B =11145.865738 C =12135.919021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.091 4.091 3 C -0.072 4.072 4 C -0.125 4.125 5 C 0.550 3.450 6 O -0.532 6.532 7 N -0.714 5.714 8 C 0.128 3.872 9 C -0.073 4.073 10 C -0.128 4.128 11 C -0.127 4.127 12 C 0.036 3.964 13 C -0.512 4.512 14 H 0.059 0.941 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.017 4.017 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.013 4.013 25 Cl -0.066 7.066 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.136 0.864 30 H 0.397 0.603 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.101 0.899 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 -23.797 0.687 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.092 4.092 3 C -0.091 4.091 4 C -0.129 4.129 5 C 0.337 3.663 6 O -0.411 6.411 7 N -0.366 5.366 8 C 0.005 3.995 9 C -0.073 4.073 10 C -0.185 4.185 11 C -0.185 4.185 12 C -0.001 4.001 13 C -0.551 4.551 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.019 4.019 22 C -0.177 4.177 23 C -0.138 4.138 24 C -0.040 4.040 25 Cl -0.037 7.037 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.154 0.846 30 H 0.233 0.767 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.478 -23.741 0.767 24.621 hybrid contribution -1.195 0.739 -0.108 1.409 sum -7.673 -23.002 0.658 24.257 Atomic orbital electron populations 1.20881 0.89797 1.03737 1.03155 1.19649 0.97011 0.91006 1.01514 1.21172 0.92840 0.97666 0.97395 1.20022 0.93440 0.93938 1.05468 1.18134 0.87237 0.83567 0.77367 1.90727 1.13527 1.87039 1.49834 1.46166 1.11068 1.06286 1.73064 1.21682 0.94758 0.81019 1.02005 1.20916 0.95367 0.95994 0.95038 1.21771 1.00130 0.99647 0.96934 1.21769 0.99114 0.99735 0.97848 1.19086 0.94971 0.88515 0.97533 1.21133 0.93354 0.90732 1.49840 0.92317 1.25009 0.94977 0.98942 0.95535 1.69952 1.12573 1.20362 1.50462 0.86709 0.81148 0.81832 0.78596 1.20325 1.21388 1.20330 1.19983 0.97267 0.90611 0.93996 1.21111 0.89201 1.03275 1.04111 1.20919 0.91621 0.98766 1.02480 1.21004 0.92315 0.86822 1.03827 1.98365 1.76525 1.32105 1.96670 0.90491 0.90738 0.90739 0.84629 0.76654 0.91545 0.91543 0.95366 0.91338 0.93279 0.93269 0.91334 0.95402 0.96299 0.96301 0.92954 0.90320 0.92336 0.88084 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.61 36.01 0.35 -0.50 16 2 C -0.09 -0.84 5.88 -104.64 -0.62 -1.46 16 3 C -0.07 -0.72 9.17 -39.19 -0.36 -1.08 16 4 C -0.13 -1.52 5.87 -104.97 -0.62 -2.14 16 5 C 0.55 8.07 7.70 -12.36 -0.10 7.97 16 6 O -0.53 -9.27 13.34 5.32 0.07 -9.20 16 7 N -0.71 -10.05 4.91 -61.27 -0.30 -10.35 16 8 C 0.13 2.17 4.56 -4.04 -0.02 2.16 16 9 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 10 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 11 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 12 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 13 C -0.51 -13.34 7.65 -34.44 -0.26 -13.60 16 14 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 17 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 C -0.02 -0.19 5.91 -104.23 -0.62 -0.81 16 22 C -0.12 -1.33 8.74 36.01 0.31 -1.01 16 23 C -0.12 -1.15 9.44 -39.60 -0.37 -1.53 16 24 C -0.01 -0.12 6.32 -39.38 -0.25 -0.37 16 25 Cl -0.07 -0.55 27.27 -51.86 -1.41 -1.97 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.07 0.51 6.89 -51.93 -0.36 0.15 16 29 H 0.14 1.12 6.45 -52.49 -0.34 0.78 16 30 H 0.40 4.72 4.23 -40.82 -0.17 4.54 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 34 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 38 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 44 H 0.10 1.34 5.84 -51.93 -0.30 1.03 16 45 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -29.60 370.33 -9.24 -38.83 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.65 Total: 1.83 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -2.24 Total: -15.28 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.44 Total: -35.72 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.41 Total: -1.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.60 -9.24 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345979874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.413 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds