Wall clock time and date at job start Tue Mar 31 2020 14:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37921 * 119.93598 * 2 1 4 4 C 1.39589 * 119.86600 * 180.29686 * 3 2 1 5 5 C 1.47789 * 120.13244 * 179.68026 * 4 3 2 6 6 O 1.21555 * 119.99985 * 173.71159 * 5 4 3 7 7 N 1.34775 * 119.99651 * 353.70281 * 5 4 3 8 8 C 1.46502 * 120.00066 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47248 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46999 * 299.99740 * 9 8 7 11 11 C 1.53000 * 109.47537 * 59.99518 * 9 8 7 12 12 C 1.53002 * 109.46989 * 179.97438 * 9 8 7 13 13 C 1.50706 * 109.47047 * 179.97438 * 12 9 8 14 14 H 1.08002 * 119.99628 * 0.02562 * 13 12 9 15 15 C 1.37873 * 119.99858 * 180.02562 * 13 12 9 16 16 N 1.31514 * 120.00062 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99752 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47499 * 60.00149 * 17 15 13 19 19 H 1.48501 * 109.47249 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47380 * 300.00021 * 17 15 13 21 21 C 1.39635 * 119.73896 * 359.40231 * 4 3 2 22 22 C 1.50701 * 120.06812 * 180.29927 * 21 4 3 23 23 C 1.37871 * 119.86890 * 0.27362 * 21 4 3 24 24 C 1.38488 * 119.93504 * 179.67873 * 2 1 3 25 25 Cl 1.73602 * 119.86583 * 0.02562 * 24 2 1 26 26 H 1.09000 * 109.46884 * 270.32615 * 1 2 3 27 27 H 1.08997 * 109.46481 * 30.32204 * 1 2 3 28 28 H 1.09002 * 109.46947 * 150.32269 * 1 2 3 29 29 H 1.08000 * 120.06694 * 359.97438 * 3 2 1 30 30 H 0.97002 * 120.00025 * 0.02562 * 7 5 4 31 31 H 1.08991 * 109.47047 * 59.99839 * 8 7 5 32 32 H 1.09000 * 109.46675 * 299.99936 * 8 7 5 33 33 H 1.09003 * 109.46828 * 60.00013 * 10 9 8 34 34 H 1.08997 * 109.47309 * 180.02562 * 10 9 8 35 35 H 1.09005 * 109.46888 * 300.00215 * 10 9 8 36 36 H 1.09008 * 109.46620 * 59.99940 * 11 9 8 37 37 H 1.08997 * 109.47029 * 180.02562 * 11 9 8 38 38 H 1.08994 * 109.47099 * 300.00699 * 11 9 8 39 39 H 1.08992 * 109.46990 * 299.99727 * 12 9 8 40 40 H 1.08997 * 109.47021 * 60.00206 * 12 9 8 41 41 H 0.96998 * 119.99539 * 179.97438 * 16 15 13 42 42 H 1.08998 * 109.47488 * 83.45143 * 22 21 4 43 43 H 1.09001 * 109.47543 * 203.45425 * 22 21 4 44 44 H 1.09006 * 109.47235 * 323.45174 * 22 21 4 45 45 H 1.07995 * 119.93878 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1952 0.0000 4 6 3.5912 1.1935 -0.0063 5 6 4.3346 2.4708 -0.0134 6 8 5.5452 2.4700 0.0964 7 7 3.6703 3.6364 -0.1420 8 6 4.4072 4.9025 -0.1497 9 6 3.4237 6.0641 -0.3062 10 6 2.6591 5.9110 -1.6226 11 6 2.4352 6.0563 0.8616 12 6 4.1934 7.3864 -0.3135 13 6 3.2247 8.5305 -0.4683 14 1 2.1661 8.3341 -0.5526 15 6 3.6901 9.8279 -0.5024 16 7 4.9792 10.0670 -0.3993 17 14 2.4894 11.2460 -0.6936 18 1 1.5300 11.2387 0.4399 19 1 3.2364 12.5294 -0.7021 20 1 1.7471 11.0975 -1.9711 21 6 4.2824 -0.0197 0.0001 22 6 5.7894 -0.0302 0.0002 23 6 3.5835 -1.2081 0.0069 24 6 2.1981 -1.2001 0.0067 25 17 1.3249 -2.7005 0.0145 26 1 -0.3633 0.0058 1.0277 27 1 -0.3632 0.8871 -0.5188 28 1 -0.3633 -0.8929 -0.5088 29 1 1.6553 2.1305 -0.0004 30 1 2.7042 3.6369 -0.2294 31 1 5.1116 4.9078 -0.9813 32 1 4.9515 5.0117 0.7884 33 1 2.1108 4.9690 -1.6168 34 1 1.9588 6.7388 -1.7343 35 1 3.3634 5.9165 -2.4545 36 1 2.9800 6.1653 1.7994 37 1 1.7344 6.8836 0.7498 38 1 1.8870 5.1143 0.8673 39 1 4.7377 7.4952 0.6244 40 1 4.8978 7.3922 -1.1453 41 1 5.3065 10.9798 -0.4237 42 1 6.1535 0.0899 1.0206 43 1 6.1462 -0.9776 -0.4038 44 1 6.1585 0.7897 -0.6161 45 1 4.1169 -2.1471 0.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345979874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:10 Heat of formation + Delta-G solvation = -60.255102 kcal Electronic energy + Delta-G solvation = -24867.739440 eV Core-core repulsion = 21295.315403 eV Total energy + Delta-G solvation = -3572.424037 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61200 -39.94316 -38.61877 -37.47918 -35.50518 -34.66636 -34.02231 -32.08593 -30.24368 -29.06993 -27.95664 -27.70533 -26.09344 -25.20588 -24.37771 -22.37941 -21.40753 -19.83352 -18.42197 -18.32470 -17.37910 -17.11263 -16.65588 -16.51756 -16.21232 -15.81417 -15.46012 -14.97621 -14.90938 -14.65144 -14.28342 -14.14889 -13.94149 -13.91016 -13.74393 -13.58466 -13.30990 -13.19330 -12.83886 -12.75135 -12.73527 -12.57472 -12.44930 -12.32114 -12.21809 -12.19619 -11.99882 -11.76004 -11.52968 -11.08078 -10.88102 -10.67052 -10.49490 -10.16154 -9.92457 -9.54030 -8.12831 -6.20537 -0.40644 0.16260 1.02065 1.43596 1.45373 1.52527 1.69872 2.12375 2.45790 2.61568 3.21737 3.56565 3.64227 3.66382 3.95879 3.99758 4.08784 4.17614 4.22112 4.35552 4.57597 4.66352 4.68082 4.72403 4.75314 4.79666 4.81840 4.82503 4.96225 4.96763 5.06431 5.12415 5.13178 5.24751 5.27972 5.35909 5.45440 5.51614 5.51627 5.54618 5.58367 5.65321 5.81288 5.91022 6.31154 6.52152 6.94550 7.17615 7.47211 8.99476 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.002512 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.801739 B =11145.865738 C =12135.919021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.090 4.090 3 C -0.068 4.068 4 C -0.143 4.143 5 C 0.549 3.451 6 O -0.567 6.567 7 N -0.703 5.703 8 C 0.142 3.858 9 C -0.064 4.064 10 C -0.123 4.123 11 C -0.123 4.123 12 C 0.040 3.960 13 C -0.513 4.513 14 H 0.073 0.927 15 C -0.005 4.005 16 N -0.939 5.939 17 Si 0.957 3.043 18 H -0.266 1.266 19 H -0.292 1.292 20 H -0.267 1.267 21 C -0.030 4.030 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.016 4.016 25 Cl -0.053 7.053 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.411 0.589 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.057 0.943 38 H 0.069 0.931 39 H -0.014 1.014 40 H -0.014 1.014 41 H 0.259 0.741 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.719 -25.643 0.552 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.091 4.091 3 C -0.087 4.087 4 C -0.146 4.146 5 C 0.338 3.662 6 O -0.448 6.448 7 N -0.356 5.356 8 C 0.018 3.982 9 C -0.064 4.064 10 C -0.180 4.180 11 C -0.180 4.180 12 C 0.002 3.998 13 C -0.551 4.551 14 H 0.091 0.909 15 C -0.202 4.202 16 N -0.580 5.580 17 Si 0.783 3.217 18 H -0.191 1.191 19 H -0.218 1.218 20 H -0.191 1.191 21 C -0.031 4.031 22 C -0.173 4.173 23 C -0.136 4.136 24 C -0.043 4.043 25 Cl -0.024 7.024 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.174 0.826 30 H 0.250 0.750 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.005 0.995 40 H 0.004 0.996 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.843 -25.611 0.628 27.444 hybrid contribution -0.152 1.189 -0.059 1.200 sum -9.995 -24.422 0.569 26.394 Atomic orbital electron populations 1.20960 0.87990 1.04631 1.04018 1.19929 0.98287 0.90520 1.00370 1.21352 0.91827 0.98943 0.96598 1.19868 0.94349 0.92566 1.07832 1.18580 0.86981 0.84374 0.76289 1.90723 1.15241 1.87586 1.51271 1.45906 1.11502 1.05052 1.73144 1.21256 0.94312 0.82175 1.00441 1.20706 0.95423 0.93246 0.97073 1.21709 0.99644 1.01400 0.95243 1.21709 0.98433 1.01572 0.96282 1.18971 0.94584 0.91826 0.94425 1.21562 0.94261 0.91175 1.48114 0.90857 1.25942 0.96571 1.02109 0.95591 1.70115 1.14778 1.20741 1.52354 0.85612 0.78883 0.78042 0.79184 1.19121 1.21837 1.19142 1.20065 0.97270 0.91091 0.94687 1.21013 0.89558 1.03460 1.03267 1.21066 0.91920 0.98822 1.01761 1.21185 0.92467 0.87592 1.03081 1.98374 1.76180 1.31340 1.96533 0.89536 0.89321 0.90452 0.82647 0.75027 0.93281 0.93270 0.91215 0.92415 0.94433 0.94400 0.92417 0.91175 0.99530 0.99550 0.93209 0.91054 0.89981 0.90690 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.61 71.24 0.68 -0.56 16 2 C -0.09 -1.39 5.88 -19.88 -0.12 -1.51 16 3 C -0.07 -1.18 9.17 22.52 0.21 -0.97 16 4 C -0.14 -3.27 5.87 -20.09 -0.12 -3.39 16 5 C 0.55 15.92 7.70 86.77 0.67 16.59 16 6 O -0.57 -20.41 13.34 -3.89 -0.05 -20.46 16 7 N -0.70 -18.96 4.91 -466.04 -2.29 -21.25 16 8 C 0.14 4.92 4.56 86.38 0.39 5.31 16 9 C -0.06 -2.33 0.54 -52.18 -0.03 -2.36 16 10 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 11 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 12 C 0.04 1.97 4.04 29.85 0.12 2.10 16 13 C -0.51 -27.01 7.65 25.60 0.20 -26.81 16 14 H 0.07 3.58 5.68 -2.91 -0.02 3.57 16 15 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 16 N -0.94 -56.71 13.29 21.45 0.28 -56.42 16 17 Si 0.96 43.06 29.54 68.60 2.03 45.08 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C -0.03 -0.64 5.91 -19.61 -0.12 -0.76 16 22 C -0.12 -2.56 8.74 71.24 0.62 -1.94 16 23 C -0.12 -2.02 9.44 22.25 0.21 -1.81 16 24 C -0.02 -0.27 6.32 22.40 0.14 -0.12 16 25 Cl -0.05 -0.75 27.27 -2.72 -0.07 -0.83 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.69 8.08 -2.39 -0.02 0.67 16 28 H 0.08 0.78 6.89 -2.39 -0.02 0.76 16 29 H 0.16 1.93 6.45 -2.91 -0.02 1.91 16 30 H 0.41 8.50 4.23 -92.71 -0.39 8.11 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 34 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 35 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 38 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 39 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 41 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.08 1.33 8.04 -2.39 -0.02 1.31 16 44 H 0.07 2.06 5.84 -2.38 -0.01 2.05 16 45 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -66.87 370.33 4.99 -61.88 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.61 Total: 14.80 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 4.49 Total: -22.80 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -2.00 Total: -77.67 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.07 Total: -0.83 kcal Total: -66.87 4.99 -61.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345979874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.622 kcal (2) G-P(sol) polarization free energy of solvation -66.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds