Wall clock time and date at job start Tue Mar 31 2020 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48504 * 109.46774 * 269.99377 * 3 2 1 5 5 H 1.48497 * 109.47508 * 29.99150 * 3 2 1 6 6 H 1.48498 * 109.47329 * 149.99993 * 3 2 1 7 7 C 1.37880 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99489 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00210 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47394 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00106 * 190.00092 * 10 9 7 12 12 C 1.52996 * 109.47425 * 73.34628 * 11 10 9 13 13 H 1.09004 * 109.47143 * 302.47242 * 12 11 10 14 14 O 1.42898 * 109.47136 * 62.47076 * 12 11 10 15 15 C 1.53003 * 109.47190 * 182.46870 * 12 11 10 16 16 C 1.50702 * 109.47167 * 174.99846 * 15 12 11 17 17 C 1.38262 * 119.99133 * 89.99898 * 16 15 12 18 18 C 1.38220 * 120.02723 * 179.97438 * 17 16 15 19 19 C 1.38235 * 120.01177 * 0.02562 * 18 17 16 20 20 C 1.38331 * 119.98657 * 359.97438 * 19 18 17 21 21 Cl 1.73606 * 120.01291 * 179.97438 * 20 19 18 22 22 C 1.38188 * 119.99463 * 269.73000 * 16 15 12 23 23 C 1.46897 * 110.99969 * 66.04027 * 10 9 7 24 24 C 1.52997 * 109.47449 * 195.97506 * 23 10 9 25 25 C 1.52989 * 117.50459 * 243.34223 * 24 23 10 26 26 C 1.52997 * 117.50244 * 174.67758 * 24 23 10 27 27 H 0.97002 * 119.99968 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47735 * 59.99911 * 9 7 2 29 29 H 1.09004 * 109.47176 * 299.99910 * 9 7 2 30 30 H 1.09005 * 109.46839 * 193.34552 * 11 10 9 31 31 H 1.09005 * 109.46938 * 313.34306 * 11 10 9 32 32 H 0.96701 * 114.00303 * 64.59429 * 14 12 11 33 33 H 1.08994 * 109.47195 * 295.00108 * 15 12 11 34 34 H 1.09004 * 109.47052 * 55.00248 * 15 12 11 35 35 H 1.08000 * 119.98630 * 359.97438 * 17 16 15 36 36 H 1.07993 * 119.99552 * 180.02562 * 18 17 16 37 37 H 1.08001 * 120.00708 * 179.97438 * 19 18 17 38 38 H 1.08001 * 120.00671 * 0.02562 * 22 16 15 39 39 H 1.08999 * 109.47562 * 315.98358 * 23 10 9 40 40 H 1.09004 * 109.46843 * 75.98103 * 23 10 9 41 41 H 1.09010 * 115.54497 * 29.01358 * 24 23 10 42 42 H 1.09001 * 117.50104 * 0.02562 * 25 24 23 43 43 H 1.09001 * 117.50359 * 145.02135 * 25 24 23 44 44 H 1.08993 * 117.50349 * 214.98451 * 26 24 23 45 45 H 1.09001 * 117.49903 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4498 -2.6252 0.2397 12 6 5.7350 -2.3091 1.7092 13 1 5.3205 -1.3320 1.9578 14 8 5.1326 -3.3064 2.5366 15 6 7.2468 -2.2966 1.9442 16 6 7.5316 -1.8655 3.3599 17 6 7.6161 -2.8098 4.3662 18 6 7.8778 -2.4152 5.6648 19 6 8.0547 -1.0760 5.9582 20 6 7.9703 -0.1307 4.9517 21 17 8.1917 1.5514 5.3195 22 6 7.7138 -0.5269 3.6510 23 6 3.6521 -3.2608 -1.2525 24 6 3.8104 -4.7718 -1.0726 25 6 4.8621 -5.4790 -1.9296 26 6 3.3737 -5.6709 -2.2310 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8751 -0.6805 -0.8889 30 1 5.8256 -3.6207 0.0027 31 1 5.9460 -1.8894 -0.3932 32 1 5.5040 -4.1915 2.4194 33 1 7.6481 -3.2968 1.7813 34 1 7.7166 -1.5992 1.2506 35 1 7.4776 -3.8562 4.1376 36 1 7.9441 -3.1533 6.4504 37 1 8.2588 -0.7677 6.9729 38 1 7.6516 0.2102 2.8641 39 1 2.6191 -3.0323 -1.5150 40 1 4.3133 -2.9184 -2.0486 41 1 3.6533 -5.1437 -0.0600 42 1 5.4416 -4.8677 -2.6214 43 1 5.3967 -6.3164 -1.4811 44 1 2.9297 -6.6343 -1.9807 45 1 2.9739 -5.1858 -3.1215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347041750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:11 Heat of formation + Delta-G solvation = -28.818434 kcal Electronic energy + Delta-G solvation = -24994.417084 eV Core-core repulsion = 21423.356243 eV Total energy + Delta-G solvation = -3571.060841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.58667 -39.56012 -38.11268 -37.38220 -36.52685 -34.53296 -33.74698 -31.63618 -30.89446 -29.85587 -27.76455 -25.58927 -23.74495 -23.50077 -23.08098 -22.17210 -21.80360 -21.02813 -19.08541 -18.00872 -17.27719 -17.04106 -16.69293 -16.44828 -16.25245 -15.91531 -15.81732 -15.59787 -14.97493 -14.81566 -14.58286 -14.38699 -14.14291 -13.94466 -13.93432 -13.38608 -13.08727 -12.85095 -12.64298 -12.50543 -12.41946 -12.32110 -12.28673 -12.16213 -12.09612 -11.84336 -11.78291 -11.59252 -11.48550 -11.10161 -10.84661 -10.80231 -10.59497 -9.79819 -9.55421 -8.92002 -8.28800 -6.30395 0.24161 0.32877 1.15481 1.29116 1.32476 1.42014 2.31778 2.66604 2.96294 3.03715 3.17791 3.63408 3.77242 3.89910 3.96518 4.07043 4.15032 4.16700 4.20314 4.28367 4.35904 4.41000 4.46107 4.51700 4.59643 4.70666 4.74285 4.79260 4.83622 4.91180 4.91879 5.01205 5.06487 5.08549 5.17742 5.22557 5.29545 5.33568 5.42503 5.46375 5.56484 5.61432 5.91624 6.02694 6.44365 6.69835 6.76329 7.14068 7.32446 8.88131 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.004030 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.838107 B = 6946.631426 C = 9309.458524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.509 4.509 8 H 0.037 0.963 9 C 0.173 3.827 10 N -0.527 5.527 11 C 0.026 3.974 12 C 0.126 3.874 13 H 0.060 0.940 14 O -0.557 6.557 15 C -0.103 4.103 16 C -0.068 4.068 17 C -0.103 4.103 18 C -0.107 4.107 19 C -0.126 4.126 20 C -0.049 4.049 21 Cl -0.083 7.083 22 C -0.130 4.130 23 C 0.096 3.904 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.185 4.185 27 H 0.266 0.734 28 H 0.025 0.975 29 H -0.019 1.019 30 H 0.100 0.900 31 H 0.035 0.965 32 H 0.380 0.620 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.048 0.952 40 H 0.027 0.973 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.476 -8.561 5.931 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.046 3.954 10 N -0.250 5.250 11 C -0.102 4.102 12 C 0.066 3.934 13 H 0.078 0.922 14 O -0.363 6.363 15 C -0.141 4.141 16 C -0.068 4.068 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.144 4.144 20 C -0.075 4.075 21 Cl -0.054 7.054 22 C -0.149 4.149 23 C -0.032 4.032 24 C -0.169 4.169 25 C -0.197 4.197 26 C -0.222 4.222 27 H 0.075 0.925 28 H 0.043 0.957 29 H -0.002 1.002 30 H 0.118 0.882 31 H 0.053 0.947 32 H 0.228 0.772 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.162 0.838 38 H 0.144 0.856 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.131 0.869 44 H 0.122 0.878 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.765 -8.027 6.540 24.102 hybrid contribution 0.113 1.504 -0.898 1.755 sum 21.878 -6.523 5.642 23.516 Atomic orbital electron populations 1.70046 1.08014 1.27910 1.52911 1.25789 0.95545 1.02845 0.94632 0.85831 0.79533 0.79184 0.79142 1.19024 1.20768 1.17599 1.21257 0.91222 0.93067 1.49195 0.94465 1.19912 0.94174 0.86978 0.94311 1.61687 1.12883 1.16056 1.34422 1.22891 0.88283 1.02400 0.96642 1.21701 0.91037 0.91782 0.88868 0.92243 1.86689 1.64850 1.20632 1.64089 1.21314 0.95486 1.04718 0.92544 1.19857 0.97878 0.92282 0.96797 1.21448 0.97612 1.00707 0.92321 1.21465 0.98151 0.95290 0.97603 1.21300 1.01176 0.92852 0.99084 1.21076 1.05898 0.85136 0.95439 1.98359 1.95681 1.16445 1.94902 1.21108 1.01570 0.96920 0.95303 1.21487 0.99609 0.92476 0.89615 1.22151 1.05798 0.92209 0.96742 1.23111 0.91256 1.02942 1.02395 1.23007 0.98510 1.01268 0.99432 0.92542 0.95689 1.00163 0.88169 0.94730 0.77196 0.87146 0.89261 0.83122 0.82416 0.83756 0.85615 0.93377 0.95522 0.87937 0.88809 0.86889 0.87762 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 2 C 0.01 0.54 5.47 84.66 0.46 1.00 16 3 Si 0.94 45.45 27.47 68.60 1.88 47.33 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 7 C -0.51 -30.20 8.84 25.60 0.23 -29.97 16 8 H 0.04 2.47 7.50 -2.91 -0.02 2.45 16 9 C 0.17 8.44 3.63 85.55 0.31 8.75 16 10 N -0.53 -21.08 4.31 -900.82 -3.88 -24.96 16 11 C 0.03 0.75 4.49 86.30 0.39 1.14 16 12 C 0.13 3.48 3.01 30.59 0.09 3.57 16 13 H 0.06 2.13 6.59 -2.38 -0.02 2.12 16 14 O -0.56 -15.95 12.75 -148.98 -1.90 -17.85 16 15 C -0.10 -1.92 4.99 29.85 0.15 -1.77 16 16 C -0.07 -1.43 4.97 -19.87 -0.10 -1.53 16 17 C -0.10 -1.83 9.40 22.27 0.21 -1.62 16 18 C -0.11 -1.79 10.05 22.26 0.22 -1.57 16 19 C -0.13 -2.45 9.83 22.29 0.22 -2.23 16 20 C -0.05 -1.14 6.32 22.32 0.14 -1.00 16 21 Cl -0.08 -1.91 28.96 -2.72 -0.08 -1.99 16 22 C -0.13 -3.12 9.49 22.29 0.21 -2.91 16 23 C 0.10 3.59 5.09 86.30 0.44 4.03 16 24 C -0.15 -4.35 4.96 -10.80 -0.05 -4.41 16 25 C -0.16 -3.33 10.06 30.61 0.31 -3.02 16 26 C -0.18 -4.54 10.25 30.62 0.31 -4.23 16 27 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 28 H 0.03 1.25 5.51 -2.39 -0.01 1.23 16 29 H -0.02 -0.92 7.55 -2.38 -0.02 -0.94 16 30 H 0.10 2.30 7.06 -2.38 -0.02 2.28 16 31 H 0.03 0.98 8.03 -2.38 -0.02 0.96 16 32 H 0.38 7.10 9.03 -74.06 -0.67 6.43 16 33 H 0.11 1.38 8.08 -2.39 -0.02 1.36 16 34 H 0.09 1.56 8.08 -2.38 -0.02 1.54 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 38 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 39 H 0.05 2.22 6.59 -2.39 -0.02 2.20 16 40 H 0.03 0.93 7.78 -2.39 -0.02 0.91 16 41 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 42 H 0.09 1.86 8.03 -2.39 -0.02 1.85 16 43 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -73.25 381.99 0.12 -73.12 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.26 Total: 20.51 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 3.54 Total: -35.76 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -3.58 Total: -85.38 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -1.90 Total: -17.85 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -73.25 0.12 -73.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347041750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.305 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds