Wall clock time and date at job start Tue Mar 31 2020 14:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00359 * 2 1 4 4 H 1.48499 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47172 * 300.00163 * 3 2 1 6 6 H 1.48503 * 109.47133 * 59.99830 * 3 2 1 7 7 C 1.37881 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00074 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46764 * 180.02562 * 9 7 2 11 11 C 1.46910 * 110.99743 * 170.00032 * 10 9 7 12 12 C 1.52999 * 109.46573 * 288.17921 * 11 10 9 13 13 H 1.09001 * 109.47621 * 58.39578 * 12 11 10 14 14 O 1.42896 * 109.47411 * 298.38702 * 12 11 10 15 15 C 1.53000 * 109.46618 * 178.39172 * 12 11 10 16 16 C 1.50701 * 109.47288 * 185.00217 * 15 12 11 17 17 C 1.38260 * 119.99612 * 89.99643 * 16 15 12 18 18 C 1.38225 * 120.02502 * 180.02562 * 17 16 15 19 19 C 1.38233 * 120.01541 * 0.02562 * 18 17 16 20 20 C 1.38335 * 119.98632 * 359.97438 * 19 18 17 21 21 Cl 1.73598 * 120.01277 * 179.97438 * 20 19 18 22 22 C 1.38191 * 119.99007 * 269.72616 * 16 15 12 23 23 C 1.46900 * 110.99955 * 293.94810 * 10 9 7 24 24 C 1.52999 * 109.47254 * 164.16598 * 23 10 9 25 25 C 1.52995 * 117.50353 * 115.67766 * 24 23 10 26 26 C 1.52998 * 117.50134 * 184.33784 * 24 23 10 27 27 H 0.97003 * 119.99685 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47300 * 59.99520 * 9 7 2 29 29 H 1.08997 * 109.47132 * 299.99860 * 9 7 2 30 30 H 1.08998 * 109.46974 * 48.17618 * 11 10 9 31 31 H 1.08991 * 109.46769 * 168.17751 * 11 10 9 32 32 H 0.96702 * 114.00107 * 304.85945 * 14 12 11 33 33 H 1.09000 * 109.47595 * 304.99682 * 15 12 11 34 34 H 1.08997 * 109.47473 * 64.99804 * 15 12 11 35 35 H 1.07996 * 119.98430 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.98749 * 180.02562 * 18 17 16 37 37 H 1.07997 * 120.00723 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.00864 * 0.02562 * 22 16 15 39 39 H 1.09001 * 109.47095 * 44.15959 * 23 10 9 40 40 H 1.09004 * 109.47275 * 284.16149 * 23 10 9 41 41 H 1.09006 * 115.54336 * 330.00361 * 24 23 10 42 42 H 1.09004 * 117.49483 * 215.00579 * 25 24 23 43 43 H 1.08999 * 117.49587 * 0.02562 * 25 24 23 44 44 H 1.09003 * 117.49836 * 359.97438 * 26 24 23 45 45 H 1.08998 * 117.50234 * 144.98582 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0018 11 6 1.5207 -4.8935 0.2400 12 6 1.0691 -4.9655 1.7000 13 1 0.4085 -4.1263 1.9179 14 8 2.2121 -4.9067 2.5556 15 6 0.3209 -6.2787 1.9381 16 6 -0.2299 -6.2959 3.3408 17 6 -1.4948 -5.7978 3.5929 18 6 -2.0003 -5.8128 4.8792 19 6 -1.2413 -6.3253 5.9146 20 6 0.0244 -6.8238 5.6630 21 17 0.9785 -7.4669 6.9629 22 6 0.5273 -6.8146 4.3739 23 6 2.9717 -3.6547 -1.2510 24 6 4.1991 -4.5501 -1.0705 25 6 4.2729 -5.8258 -1.9120 26 6 5.1853 -4.6404 -2.2368 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8903 30 1 0.6513 -4.9671 -0.4133 31 1 2.2038 -5.7164 0.0298 32 1 2.8795 -5.5808 2.3674 33 1 -0.4989 -6.3643 1.2249 34 1 1.0059 -7.1162 1.8065 35 1 -2.0877 -5.3962 2.7845 36 1 -2.9886 -5.4240 5.0754 37 1 -1.6362 -6.3366 6.9197 38 1 1.5139 -7.2072 4.1762 39 1 3.2927 -2.6463 -1.5120 40 1 2.3446 -4.0542 -2.0481 41 1 4.6085 -4.5886 -0.0610 42 1 4.7308 -6.7036 -1.4560 43 1 3.4472 -6.0269 -2.5945 44 1 4.9595 -4.0623 -3.1328 45 1 6.2435 -4.7383 -1.9946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347041752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:15 Heat of formation + Delta-G solvation = -13.739130 kcal Electronic energy + Delta-G solvation = -24910.810747 eV Core-core repulsion = 21340.403794 eV Total energy + Delta-G solvation = -3570.406953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.60137 -38.22082 -36.97296 -36.42399 -34.96894 -32.75750 -32.41840 -30.77310 -29.47642 -27.44245 -26.54601 -24.07415 -22.71111 -22.42850 -22.02505 -21.09479 -20.45148 -19.65908 -17.11405 -16.57151 -16.04446 -15.74939 -15.40576 -15.35531 -14.93060 -14.62966 -14.44703 -14.06468 -13.79136 -13.60746 -13.37915 -13.11630 -12.91400 -12.32400 -11.95308 -11.83110 -11.72028 -11.57158 -11.50795 -11.31323 -11.26487 -11.16374 -10.94903 -10.87801 -10.67941 -10.63254 -10.36037 -10.11762 -9.78671 -9.57633 -9.50154 -9.11479 -8.86345 -8.60212 -8.41759 -7.22226 -6.01772 -4.01754 1.14022 1.25857 2.07509 3.32383 3.40104 3.45277 3.59034 4.08708 4.41905 4.52671 4.71004 4.77263 4.87615 5.03642 5.07697 5.22478 5.23695 5.24335 5.30450 5.34934 5.37990 5.52122 5.62968 5.70580 5.76725 5.79267 5.80407 5.89129 5.96832 6.07802 6.09318 6.17829 6.28952 6.29512 6.29911 6.42204 6.50616 6.59734 6.78154 6.79999 7.28011 7.31748 7.81940 8.08154 8.13828 8.22937 8.56094 9.06080 9.62296 11.09323 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009998 B = 0.003446 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.836081 B = 8124.468347 C = 9807.861868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.523 5.523 11 C 0.025 3.975 12 C 0.120 3.880 13 H 0.104 0.896 14 O -0.537 6.537 15 C -0.115 4.115 16 C -0.053 4.053 17 C -0.113 4.113 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.033 4.033 21 Cl -0.079 7.079 22 C -0.095 4.095 23 C 0.092 3.908 24 C -0.131 4.131 25 C -0.193 4.193 26 C -0.184 4.184 27 H 0.260 0.740 28 H -0.013 1.013 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.361 0.639 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.018 0.982 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 -16.943 5.224 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.246 5.246 11 C -0.104 4.104 12 C 0.060 3.940 13 H 0.121 0.879 14 O -0.340 6.340 15 C -0.153 4.153 16 C -0.053 4.053 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.140 4.140 20 C -0.059 4.059 21 Cl -0.051 7.051 22 C -0.114 4.114 23 C -0.037 4.037 24 C -0.150 4.150 25 C -0.230 4.230 26 C -0.221 4.221 27 H 0.069 0.931 28 H 0.005 0.995 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.206 0.794 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.108 0.892 40 H 0.036 0.964 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.113 -16.280 5.981 17.344 hybrid contribution 0.105 0.306 -0.828 0.889 sum -0.007 -15.974 5.153 16.785 Atomic orbital electron populations 1.69964 1.06039 1.26586 1.51369 1.24969 0.94838 0.99261 0.95505 0.86478 0.80194 0.83554 0.77446 1.19616 1.21213 1.21021 1.21194 0.93574 0.89873 1.49510 0.91758 1.19756 0.90114 0.87506 0.95845 1.61986 1.27558 1.02091 1.32999 1.22738 0.97378 0.94436 0.95830 1.21917 0.87334 0.95451 0.89292 0.87875 1.86697 1.30852 1.58266 1.58199 1.21424 1.01140 0.99980 0.92792 1.19707 0.93639 0.96620 0.95368 1.21219 0.95548 0.98998 0.97322 1.21074 0.99975 0.99033 0.92351 1.20989 0.92997 0.99891 1.00077 1.20886 0.93402 1.02408 0.89250 1.98357 1.72132 1.85201 1.49366 1.20867 0.99970 1.00180 0.90358 1.21581 0.91941 0.99698 0.90446 1.22467 0.98674 0.97755 0.96121 1.23030 1.02763 0.92583 1.04590 1.22901 0.96394 1.02220 1.00621 0.93063 0.99481 0.94928 0.95269 0.91591 0.79414 0.89902 0.90659 0.85325 0.85211 0.85344 0.85174 0.89156 0.96373 0.87283 0.89560 0.89475 0.89117 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.50 -13.98 8.29 -34.44 -0.29 -14.27 16 8 H 0.06 1.79 7.25 -52.49 -0.38 1.41 16 9 C 0.19 4.87 4.57 -4.98 -0.02 4.85 16 10 N -0.52 -10.62 4.31 -236.07 -1.02 -11.64 16 11 C 0.03 0.41 4.43 -3.82 -0.02 0.39 16 12 C 0.12 1.85 2.98 -26.73 -0.08 1.77 16 13 H 0.10 1.95 6.54 -51.93 -0.34 1.61 16 14 O -0.54 -8.70 12.75 -35.23 -0.45 -9.15 16 15 C -0.12 -1.35 5.05 -27.88 -0.14 -1.49 16 16 C -0.05 -0.66 4.96 -104.63 -0.52 -1.18 16 17 C -0.11 -1.36 9.70 -39.58 -0.38 -1.75 16 18 C -0.11 -1.18 10.05 -39.59 -0.40 -1.57 16 19 C -0.12 -1.36 9.83 -39.55 -0.39 -1.75 16 20 C -0.03 -0.40 6.32 -39.49 -0.25 -0.65 16 21 Cl -0.08 -0.90 28.96 -51.86 -1.50 -2.40 16 22 C -0.10 -1.17 9.20 -39.55 -0.36 -1.53 16 23 C 0.09 1.71 5.09 -3.82 -0.02 1.69 16 24 C -0.13 -1.98 4.97 -90.62 -0.45 -2.43 16 25 C -0.19 -2.39 10.04 -26.70 -0.27 -2.65 16 26 C -0.18 -2.39 10.25 -26.70 -0.27 -2.66 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 29 H 0.03 0.89 6.37 -51.93 -0.33 0.56 16 30 H 0.03 0.48 8.05 -51.93 -0.42 0.07 16 31 H 0.07 0.93 7.05 -51.93 -0.37 0.56 16 32 H 0.36 4.45 9.03 45.56 0.41 4.86 16 33 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.09 1.91 6.59 -51.93 -0.34 1.57 16 40 H 0.02 0.33 7.79 -51.93 -0.40 -0.07 16 41 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.07 8.03 -51.93 -0.42 0.66 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 385.44 15.07 5.81 5.81 Total: -1.00 -30.64 385.44 -11.77 -42.41 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.37 Total: 5.82 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -3.96 Total: -21.78 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.28 Total: -37.42 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.45 Total: -9.15 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.64 -11.77 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347041752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.668 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds