Wall clock time and date at job start Tue Mar 31 2020 14:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30156 * 125.74005 * 2 1 4 4 N 1.39993 * 109.72280 * 180.02562 * 3 2 1 5 5 C 1.46497 * 125.87809 * 180.02562 * 4 3 2 6 6 C 1.36916 * 108.24234 * 359.97438 * 4 3 2 7 7 N 1.32827 * 133.43038 * 180.02562 * 6 4 3 8 8 C 1.31610 * 121.76034 * 180.02562 * 7 6 4 9 9 C 1.38522 * 121.57238 * 359.97438 * 8 7 6 10 10 C 1.38681 * 119.47837 * 0.02562 * 9 8 7 11 11 O 1.35641 * 121.00160 * 180.02562 * 10 9 8 12 12 C 1.42902 * 116.99617 * 359.97438 * 11 10 9 13 13 C 1.50705 * 109.46697 * 179.97438 * 12 11 10 14 14 C 1.38630 * 119.74253 * 90.00487 * 13 12 11 15 15 C 1.37623 * 120.24117 * 180.27159 * 14 13 12 16 16 C 1.40707 * 119.74849 * 359.52215 * 15 14 13 17 17 C 1.41400 * 120.24843 * 180.22492 * 16 15 14 18 18 H 1.07994 * 120.00480 * 204.52708 * 17 16 15 19 19 C 1.39950 * 119.99509 * 24.53120 * 17 16 15 20 20 N 1.30821 * 119.99991 * 17.72383 * 19 17 16 21 21 Si 1.86800 * 119.99756 * 197.72017 * 19 17 16 22 22 H 1.48499 * 109.47128 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46931 * 119.99981 * 21 19 17 24 24 H 1.48490 * 109.47155 * 239.99623 * 21 19 17 25 25 C 1.40715 * 119.51064 * 0.47652 * 16 15 14 26 26 C 1.37618 * 119.74364 * 359.74989 * 25 16 15 27 27 C 1.40676 * 106.41758 * 0.25624 * 6 4 3 28 28 H 1.09001 * 109.47235 * 89.97389 * 1 2 3 29 29 H 1.08993 * 109.46957 * 209.98137 * 1 2 3 30 30 H 1.09007 * 109.47006 * 329.97846 * 1 2 3 31 31 H 1.08998 * 109.47256 * 269.95369 * 5 4 3 32 32 H 1.08999 * 109.47201 * 29.96002 * 5 4 3 33 33 H 1.09002 * 109.46989 * 149.95298 * 5 4 3 34 34 H 1.07997 * 119.21777 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.25982 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.46817 * 60.00455 * 12 11 10 37 37 H 1.08991 * 109.47573 * 300.00143 * 12 11 10 38 38 H 1.08001 * 119.88189 * 0.02562 * 14 13 12 39 39 H 1.08002 * 120.12205 * 179.72192 * 15 14 13 40 40 H 0.97005 * 119.99803 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.12804 * 179.73261 * 25 16 15 42 42 H 1.08002 * 119.87235 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2673 1.0564 0.0000 4 7 3.6129 0.6702 -0.0006 5 6 4.7656 1.5742 -0.0002 6 6 3.6660 -0.6980 -0.0004 7 7 4.6653 -1.5730 -0.0003 8 6 4.4494 -2.8712 -0.0006 9 6 3.1662 -3.3930 -0.0005 10 6 2.0793 -2.5317 -0.0006 11 8 0.8096 -3.0090 0.0000 12 6 0.6505 -4.4292 0.0002 13 6 -0.8175 -4.7701 0.0015 14 6 -1.4884 -4.9258 -1.2015 15 6 -2.8302 -5.2317 -1.2123 16 6 -3.5186 -5.3962 0.0038 17 6 -4.8961 -5.7152 0.0051 18 1 -5.5083 -5.4620 0.8580 19 6 -5.4662 -6.3591 -1.0990 20 7 -4.7014 -6.9718 -1.9657 21 14 -7.3192 -6.3437 -1.3351 22 1 -7.9534 -5.5887 -0.2247 23 1 -7.6480 -5.6913 -2.6279 24 1 -7.8290 -7.7384 -1.3407 25 6 -2.8272 -5.2357 1.2189 26 6 -1.4866 -4.9252 1.2057 27 6 2.3331 -1.1477 -0.0057 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 5.0518 1.7985 -1.0278 32 1 4.5022 2.4987 0.5137 33 1 5.6006 1.0981 0.5138 34 1 5.2927 -3.5459 -0.0009 35 1 3.0134 -4.4622 -0.0003 36 1 1.1211 -4.8473 0.8901 37 1 1.1203 -4.8476 -0.8898 38 1 -0.9572 -4.8028 -2.1338 39 1 -3.3521 -5.3481 -2.1507 40 1 -5.0965 -7.4178 -2.7312 41 1 -3.3468 -5.3554 2.1581 42 1 -0.9538 -4.8019 2.1371 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352224277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:27 Heat of formation + Delta-G solvation = 77.353447 kcal Electronic energy + Delta-G solvation = -25696.453813 eV Core-core repulsion = 22028.889436 eV Total energy + Delta-G solvation = -3667.564377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.76446 -39.31806 -37.79566 -37.17479 -34.26713 -33.86746 -31.27101 -30.50864 -30.07016 -29.46926 -29.38888 -27.25136 -25.63854 -24.07256 -23.68986 -22.17047 -21.14872 -20.13613 -19.97303 -17.78423 -17.44281 -17.25220 -17.13203 -16.14228 -15.54668 -15.24332 -15.00548 -14.76636 -14.16848 -13.98656 -13.71144 -13.68022 -13.38493 -13.20521 -13.05006 -12.78257 -12.63372 -12.33874 -12.09350 -11.96346 -11.74557 -11.52262 -11.38821 -11.19735 -11.08236 -10.83335 -10.57401 -10.54745 -9.76599 -9.60062 -9.54929 -9.51171 -9.26988 -8.76418 -8.04886 -7.62027 -7.51859 -6.92059 -4.51415 0.84138 1.35046 2.11880 2.43958 2.47630 2.94467 2.96845 3.00798 3.05747 3.54148 3.77141 3.82403 4.10633 4.42404 4.51970 4.67773 4.79199 4.92281 5.07598 5.14960 5.30915 5.36324 5.46171 5.48785 5.49731 5.60162 5.74489 5.86573 5.91123 5.94605 6.03197 6.17884 6.20172 6.25306 6.57834 6.82240 6.83247 6.92829 7.12432 7.20805 7.40302 7.46337 7.53484 7.69895 7.91412 7.94488 7.94912 8.14319 8.49220 8.73975 8.81533 10.01910 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.002539 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.797394 B =11026.722415 C =11673.177347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.136 3.864 3 N -0.264 5.264 4 N -0.396 5.396 5 C 0.118 3.882 6 C 0.342 3.658 7 N -0.541 5.541 8 C 0.207 3.793 9 C -0.325 4.325 10 C 0.264 3.736 11 O -0.292 6.292 12 C 0.123 3.877 13 C -0.237 4.237 14 C -0.074 4.074 15 C -0.171 4.171 16 C 0.120 3.880 17 C -0.455 4.455 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.785 5.785 21 Si 0.909 3.091 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.273 1.273 25 C -0.231 4.231 26 C -0.062 4.062 27 C -0.257 4.257 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.145 0.855 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.283 0.717 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.214 8.171 1.558 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 N -0.080 5.080 4 N -0.186 5.186 5 C -0.023 4.023 6 C 0.103 3.897 7 N -0.261 5.261 8 C 0.040 3.960 9 C -0.349 4.349 10 C 0.205 3.795 11 O -0.201 6.201 12 C 0.050 3.950 13 C -0.239 4.239 14 C -0.092 4.092 15 C -0.190 4.190 16 C 0.117 3.883 17 C -0.483 4.483 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.409 5.409 21 Si 0.733 3.267 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.250 4.250 26 C -0.080 4.080 27 C -0.268 4.268 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.182 0.818 35 H 0.163 0.837 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.944 9.903 1.347 17.156 hybrid contribution -1.300 -1.505 -0.237 2.003 sum 12.644 8.399 1.110 15.220 Atomic orbital electron populations 1.20377 0.85127 1.04305 1.03954 1.22332 0.97286 0.88428 0.95932 1.76818 0.85817 1.22552 1.22793 1.48120 1.04833 1.01351 1.64260 1.21725 0.84452 0.93186 1.02977 1.18847 0.89377 0.86225 0.95285 1.66747 1.33387 1.02478 1.23474 1.22383 0.95841 0.89389 0.88401 1.21928 0.93161 1.01196 1.18613 1.18906 0.85322 0.90225 0.85086 1.86340 1.22024 1.27318 1.84387 1.21655 0.96758 0.76225 1.00362 1.18551 0.92593 1.18580 0.94131 1.20523 0.94928 0.98738 0.95052 1.21298 0.93253 1.05622 0.98813 1.17694 0.92924 0.86752 0.90949 1.19725 0.94129 1.32618 1.01856 0.90094 1.25981 1.00954 0.92744 0.94713 1.69825 1.37912 1.22634 1.10573 0.86236 0.82007 0.78901 0.79513 1.18242 1.19541 1.19861 1.20953 0.93774 1.13148 0.97141 1.20370 0.94492 0.98048 0.95135 1.18741 0.94513 0.92362 1.21180 0.89739 0.88772 0.90587 0.91352 0.89591 0.89373 0.81813 0.83722 0.92282 0.92188 0.89341 0.86274 0.90644 0.88724 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.22 36.01 0.37 -0.69 16 2 C 0.14 2.10 7.24 -82.10 -0.59 1.51 16 3 N -0.26 -4.05 12.44 33.88 0.42 -3.63 16 4 N -0.40 -5.65 4.06 -67.24 -0.27 -5.93 16 5 C 0.12 1.11 11.48 59.85 0.69 1.80 16 6 C 0.34 5.30 7.99 -156.06 -1.25 4.05 16 7 N -0.54 -7.66 10.39 -12.42 -0.13 -7.79 16 8 C 0.21 2.46 11.14 -17.54 -0.20 2.27 16 9 C -0.33 -4.21 9.11 -39.31 -0.36 -4.57 16 10 C 0.26 4.11 6.77 -38.48 -0.26 3.85 16 11 O -0.29 -4.95 8.95 -18.62 -0.17 -5.11 16 12 C 0.12 2.02 4.88 36.01 0.18 2.19 16 13 C -0.24 -4.84 5.53 -104.33 -0.58 -5.42 16 14 C -0.07 -1.63 9.67 -39.66 -0.38 -2.01 16 15 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 16 C 0.12 3.03 5.57 -106.83 -0.60 2.43 16 17 C -0.45 -11.48 9.06 -37.74 -0.34 -11.82 16 18 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 19 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 20 N -0.78 -19.29 10.95 55.55 0.61 -18.68 16 21 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 16 22 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 25 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 26 C -0.06 -1.31 9.67 -39.66 -0.38 -1.69 16 27 C -0.26 -4.16 6.12 -106.84 -0.65 -4.82 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.36 7.19 -51.93 -0.37 0.98 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.15 1.58 6.45 -52.48 -0.34 1.25 16 36 H 0.06 0.87 7.65 -51.93 -0.40 0.47 16 37 H 0.06 0.90 7.65 -51.93 -0.40 0.50 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 40 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 41 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 42 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -28.97 360.02 -9.50 -38.47 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.18 Total: 6.01 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -5.17 Total: -21.49 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.63 Total: -36.03 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.17 Total: -5.11 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.97 -9.50 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352224277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.821 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds