Wall clock time and date at job start Tue Mar 31 2020 14:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30156 * 125.74005 * 2 1 4 4 N 1.39993 * 109.72280 * 180.02562 * 3 2 1 5 5 C 1.46497 * 125.87809 * 180.02562 * 4 3 2 6 6 C 1.36916 * 108.24234 * 359.97438 * 4 3 2 7 7 N 1.32827 * 133.43038 * 180.02562 * 6 4 3 8 8 C 1.31610 * 121.76034 * 180.02562 * 7 6 4 9 9 C 1.38522 * 121.57238 * 359.97438 * 8 7 6 10 10 C 1.38681 * 119.47837 * 0.02562 * 9 8 7 11 11 O 1.35641 * 121.00160 * 180.02562 * 10 9 8 12 12 C 1.42902 * 116.99617 * 359.97438 * 11 10 9 13 13 C 1.50705 * 109.46697 * 179.97438 * 12 11 10 14 14 C 1.38630 * 119.74253 * 90.00487 * 13 12 11 15 15 C 1.37623 * 120.24117 * 180.27159 * 14 13 12 16 16 C 1.40707 * 119.74849 * 359.52215 * 15 14 13 17 17 C 1.41400 * 120.24843 * 180.22492 * 16 15 14 18 18 H 1.07994 * 120.00480 * 204.52708 * 17 16 15 19 19 C 1.39950 * 119.99509 * 24.53120 * 17 16 15 20 20 N 1.30821 * 119.99991 * 17.72383 * 19 17 16 21 21 Si 1.86800 * 119.99756 * 197.72017 * 19 17 16 22 22 H 1.48499 * 109.47128 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46931 * 119.99981 * 21 19 17 24 24 H 1.48490 * 109.47155 * 239.99623 * 21 19 17 25 25 C 1.40715 * 119.51064 * 0.47652 * 16 15 14 26 26 C 1.37618 * 119.74364 * 359.74989 * 25 16 15 27 27 C 1.40676 * 106.41758 * 0.25624 * 6 4 3 28 28 H 1.09001 * 109.47235 * 89.97389 * 1 2 3 29 29 H 1.08993 * 109.46957 * 209.98137 * 1 2 3 30 30 H 1.09007 * 109.47006 * 329.97846 * 1 2 3 31 31 H 1.08998 * 109.47256 * 269.95369 * 5 4 3 32 32 H 1.08999 * 109.47201 * 29.96002 * 5 4 3 33 33 H 1.09002 * 109.46989 * 149.95298 * 5 4 3 34 34 H 1.07997 * 119.21777 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.25982 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.46817 * 60.00455 * 12 11 10 37 37 H 1.08991 * 109.47573 * 300.00143 * 12 11 10 38 38 H 1.08001 * 119.88189 * 0.02562 * 14 13 12 39 39 H 1.08002 * 120.12205 * 179.72192 * 15 14 13 40 40 H 0.97005 * 119.99803 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.12804 * 179.73261 * 25 16 15 42 42 H 1.08002 * 119.87235 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2673 1.0564 0.0000 4 7 3.6129 0.6702 -0.0006 5 6 4.7656 1.5742 -0.0002 6 6 3.6660 -0.6980 -0.0004 7 7 4.6653 -1.5730 -0.0003 8 6 4.4494 -2.8712 -0.0006 9 6 3.1662 -3.3930 -0.0005 10 6 2.0793 -2.5317 -0.0006 11 8 0.8096 -3.0090 0.0000 12 6 0.6505 -4.4292 0.0002 13 6 -0.8175 -4.7701 0.0015 14 6 -1.4884 -4.9258 -1.2015 15 6 -2.8302 -5.2317 -1.2123 16 6 -3.5186 -5.3962 0.0038 17 6 -4.8961 -5.7152 0.0051 18 1 -5.5083 -5.4620 0.8580 19 6 -5.4662 -6.3591 -1.0990 20 7 -4.7014 -6.9718 -1.9657 21 14 -7.3192 -6.3437 -1.3351 22 1 -7.9534 -5.5887 -0.2247 23 1 -7.6480 -5.6913 -2.6279 24 1 -7.8290 -7.7384 -1.3407 25 6 -2.8272 -5.2357 1.2189 26 6 -1.4866 -4.9252 1.2057 27 6 2.3331 -1.1477 -0.0057 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 5.0518 1.7985 -1.0278 32 1 4.5022 2.4987 0.5137 33 1 5.6006 1.0981 0.5138 34 1 5.2927 -3.5459 -0.0009 35 1 3.0134 -4.4622 -0.0003 36 1 1.1211 -4.8473 0.8901 37 1 1.1203 -4.8476 -0.8898 38 1 -0.9572 -4.8028 -2.1338 39 1 -3.3521 -5.3481 -2.1507 40 1 -5.0965 -7.4178 -2.7312 41 1 -3.3468 -5.3554 2.1581 42 1 -0.9538 -4.8019 2.1371 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352224277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:25 Heat of formation + Delta-G solvation = 63.072513 kcal Electronic energy + Delta-G solvation = -25697.073081 eV Core-core repulsion = 22028.889436 eV Total energy + Delta-G solvation = -3668.183644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.83192 -40.55478 -39.30754 -38.43039 -35.75870 -35.14090 -32.75325 -31.66023 -31.26978 -31.14328 -30.44567 -28.81515 -26.67103 -25.60058 -24.72912 -23.34839 -22.91555 -21.78086 -21.08814 -19.25246 -18.83114 -18.35689 -18.24195 -17.32057 -17.13522 -16.50558 -16.34670 -15.83635 -15.68039 -15.18333 -15.12974 -14.96018 -14.47358 -14.32762 -14.21351 -14.13824 -13.83815 -13.66162 -13.51720 -13.29452 -13.00427 -12.87718 -12.81603 -12.71095 -12.48190 -12.19402 -12.12486 -11.87969 -11.46408 -11.28911 -11.03307 -10.64849 -10.60059 -9.86907 -9.40607 -9.30859 -9.10023 -8.68343 -6.38085 -0.21392 0.27825 0.77824 1.14362 1.17587 1.36593 1.38802 1.44893 1.53767 2.17406 2.20871 2.73037 2.77136 3.13438 3.46181 3.60223 3.74790 3.80768 3.91382 4.18349 4.21067 4.27810 4.31632 4.39303 4.46206 4.52211 4.58315 4.61334 4.63196 4.69930 4.86048 4.89623 5.02394 5.04870 5.13682 5.17471 5.34011 5.42359 5.50754 5.67627 5.86846 5.90486 6.08206 6.17256 6.26715 6.35248 6.43428 6.67258 6.90820 6.92230 6.99687 8.28545 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.002539 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.797394 B =11026.722415 C =11673.177347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.120 3.880 3 N -0.277 5.277 4 N -0.399 5.399 5 C 0.109 3.891 6 C 0.326 3.674 7 N -0.547 5.547 8 C 0.212 3.788 9 C -0.318 4.318 10 C 0.243 3.757 11 O -0.308 6.308 12 C 0.127 3.873 13 C -0.224 4.224 14 C -0.079 4.079 15 C -0.195 4.195 16 C 0.088 3.912 17 C -0.494 4.494 18 H 0.077 0.923 19 C 0.036 3.964 20 N -0.818 5.818 21 Si 0.981 3.019 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.265 1.265 25 C -0.247 4.247 26 C -0.064 4.064 27 C -0.283 4.283 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.210 0.790 35 H 0.169 0.831 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.290 0.710 41 H 0.099 0.901 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.327 8.212 1.817 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.055 4.055 3 N -0.093 5.093 4 N -0.189 5.189 5 C -0.030 4.030 6 C 0.086 3.914 7 N -0.268 5.268 8 C 0.045 3.955 9 C -0.341 4.341 10 C 0.185 3.815 11 O -0.218 6.218 12 C 0.054 3.946 13 C -0.226 4.226 14 C -0.097 4.097 15 C -0.215 4.215 16 C 0.085 3.915 17 C -0.523 4.523 18 H 0.095 0.905 19 C -0.180 4.180 20 N -0.444 5.444 21 Si 0.802 3.198 22 H -0.182 1.182 23 H -0.189 1.189 24 H -0.189 1.189 25 C -0.267 4.267 26 C -0.082 4.082 27 C -0.294 4.294 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.226 0.774 35 H 0.187 0.813 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.087 9.966 1.612 18.992 hybrid contribution -1.670 -1.447 -0.279 2.228 sum 14.417 8.519 1.333 16.799 Atomic orbital electron populations 1.20341 0.84382 1.04331 1.04139 1.22587 0.97999 0.88573 0.96363 1.76740 0.86679 1.22831 1.23083 1.48506 1.05200 1.01691 1.63468 1.22058 0.83442 0.93259 1.04272 1.19126 0.89494 0.86932 0.95817 1.66873 1.32944 1.03276 1.23665 1.23157 0.96938 0.89112 0.86252 1.22258 0.92725 1.02049 1.17041 1.19081 0.85272 0.90471 0.86642 1.86246 1.23286 1.27000 1.85270 1.21591 0.93926 0.76527 1.02541 1.18957 0.94755 1.15755 0.93099 1.20784 0.94157 0.98020 0.96762 1.21265 0.94585 1.07568 0.98032 1.18025 0.93627 0.87839 0.91963 1.19931 0.94702 1.34709 1.02987 0.90509 1.26772 1.05452 0.91780 0.93970 1.69867 1.39851 1.23399 1.11262 0.85172 0.76158 0.79137 0.79373 1.18186 1.18905 1.18940 1.21164 0.95036 1.13706 0.96744 1.20710 0.93784 0.96903 0.96807 1.19048 0.95203 0.92975 1.22151 0.89446 0.90121 0.89079 0.90055 0.88055 0.88206 0.77397 0.81326 0.89803 0.90337 0.87540 0.88096 0.89951 0.88298 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.22 71.24 0.73 -1.23 16 2 C 0.12 3.68 7.24 43.59 0.32 3.99 16 3 N -0.28 -8.33 12.44 -46.74 -0.58 -8.91 16 4 N -0.40 -10.89 4.06 -366.65 -1.49 -12.38 16 5 C 0.11 1.86 11.48 127.77 1.47 3.33 16 6 C 0.33 9.60 7.99 134.01 1.07 10.67 16 7 N -0.55 -14.05 10.39 -193.20 -2.01 -16.06 16 8 C 0.21 4.25 11.14 84.79 0.94 5.19 16 9 C -0.32 -7.10 9.11 22.44 0.20 -6.90 16 10 C 0.24 7.11 6.77 22.98 0.16 7.27 16 11 O -0.31 -9.89 8.95 -89.55 -0.80 -10.69 16 12 C 0.13 3.80 4.88 71.24 0.35 4.14 16 13 C -0.22 -8.83 5.53 -19.68 -0.11 -8.94 16 14 C -0.08 -3.46 9.67 22.22 0.21 -3.25 16 15 C -0.20 -9.95 8.70 22.73 0.20 -9.75 16 16 C 0.09 4.62 5.57 -21.29 -0.12 4.50 16 17 C -0.49 -26.05 9.06 23.46 0.21 -25.84 16 18 H 0.08 3.92 7.91 -2.91 -0.02 3.90 16 19 C 0.04 1.77 5.14 85.26 0.44 2.21 16 20 N -0.82 -41.58 10.95 21.83 0.24 -41.34 16 21 Si 0.98 37.18 29.59 68.60 2.03 39.21 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 25 C -0.25 -11.68 9.80 22.73 0.22 -11.46 16 26 C -0.06 -2.62 9.67 22.22 0.21 -2.41 16 27 C -0.28 -8.88 6.12 -21.30 -0.13 -9.01 16 28 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.08 2.35 7.19 -2.39 -0.02 2.34 16 30 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.21 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.17 2.88 6.45 -2.91 -0.02 2.87 16 36 H 0.08 2.11 7.65 -2.38 -0.02 2.09 16 37 H 0.08 2.07 7.65 -2.39 -0.02 2.05 16 38 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.10 5.42 6.16 -2.91 -0.02 5.40 16 40 H 0.29 13.22 8.30 -92.70 -0.77 12.45 16 41 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 42 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -65.08 360.02 4.81 -60.26 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 1.05 Total: 27.39 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 6.38 Total: -37.48 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -3.84 Total: -78.69 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.80 Total: -10.69 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -65.08 4.81 -60.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352224277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.336 kcal (2) G-P(sol) polarization free energy of solvation -65.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds