Wall clock time and date at job start Tue Mar 31 2020 14:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30817 * 119.23007 * 2 1 4 4 C 1.33805 * 121.71927 * 179.97438 * 3 2 1 5 5 C 1.40526 * 120.82076 * 180.02562 * 4 3 2 6 6 C 1.36129 * 119.81562 * 179.74439 * 5 4 3 7 7 C 1.39351 * 121.08731 * 0.25194 * 6 5 4 8 8 C 1.36138 * 120.83949 * 0.02562 * 7 6 5 9 9 C 1.40554 * 119.62016 * 359.97438 * 8 7 6 10 10 C 1.40492 * 121.22794 * 180.02562 * 9 8 7 11 11 C 1.39051 * 117.95878 * 179.20876 * 10 9 8 12 12 C 1.47756 * 120.26847 * 180.22580 * 11 10 9 13 13 O 1.21569 * 119.99898 * 234.21981 * 12 11 10 14 14 N 1.34773 * 120.00025 * 54.21820 * 12 11 10 15 15 C 1.46504 * 119.99926 * 185.90791 * 14 12 11 16 16 C 1.50701 * 109.46823 * 90.00174 * 15 14 12 17 17 H 1.07997 * 120.00516 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99836 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00108 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 120.00189 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47098 * 89.99723 * 20 18 16 22 22 H 1.48498 * 109.46763 * 209.99545 * 20 18 16 23 23 H 1.48500 * 109.46614 * 329.99444 * 20 18 16 24 24 C 1.46492 * 120.00202 * 5.91187 * 14 12 11 25 25 C 1.53009 * 109.47028 * 84.35666 * 24 14 12 26 26 C 1.47198 * 109.46916 * 180.02562 * 25 24 14 27 27 N 5.79604 * 110.26967 * 110.12291 * 2 1 3 28 28 H 1.09002 * 109.46448 * 86.14487 * 1 2 3 29 29 H 1.08989 * 109.47061 * 206.14636 * 1 2 3 30 30 H 1.08996 * 109.46680 * 326.14896 * 1 2 3 31 31 H 1.08002 * 120.09290 * 0.02562 * 5 4 3 32 32 H 1.07993 * 119.45940 * 180.27557 * 6 5 4 33 33 H 1.08003 * 119.58137 * 179.97438 * 7 6 5 34 34 H 1.08007 * 120.19374 * 179.97438 * 8 7 6 35 35 H 1.08000 * 121.01880 * 359.95268 * 10 9 8 36 36 H 1.09000 * 109.47046 * 210.00022 * 15 14 12 37 37 H 1.08998 * 109.47489 * 330.00690 * 15 14 12 38 38 H 0.96999 * 120.00580 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.47692 * 204.35655 * 24 14 12 40 40 H 1.08998 * 109.47222 * 324.36003 * 24 14 12 41 41 H 1.08994 * 109.47074 * 299.99873 * 25 24 14 42 42 H 1.08989 * 109.47055 * 60.00325 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4826 1.1997 0.0005 5 6 4.1495 2.4366 0.0010 6 6 5.5104 2.4719 0.0068 7 6 6.2606 1.2976 0.0070 8 6 5.6513 0.0802 0.0009 9 6 4.2477 0.0059 -0.0052 10 6 3.5839 -1.2323 -0.0110 11 6 2.1934 -1.2267 0.0001 12 6 1.4434 -2.4997 -0.0004 13 8 0.5977 -2.7067 -0.8488 14 7 1.6969 -3.4315 0.9398 15 6 1.0486 -4.7432 0.8647 16 6 1.9092 -5.6835 0.0607 17 1 2.8455 -5.3388 -0.3526 18 6 1.5016 -6.9842 -0.1464 19 7 2.2523 -7.8047 -0.8484 20 14 -0.1176 -7.5808 0.5690 21 1 -1.2083 -7.3454 -0.4108 22 1 -0.0229 -9.0330 0.8648 23 1 -0.4087 -6.8384 1.8217 24 6 2.6206 -3.1329 2.0368 25 6 1.8690 -2.4033 3.1521 26 6 2.7973 -2.1026 4.2542 27 7 3.5150 -1.8706 5.1052 28 1 -0.3632 0.0691 -1.0254 29 1 -0.3633 -0.9224 0.4528 30 1 -0.3632 0.8535 0.5724 31 1 3.5840 3.3568 0.0015 32 1 6.0169 3.4256 0.0117 33 1 7.3391 1.3539 0.0112 34 1 6.2429 -0.8234 0.0007 35 1 4.1367 -2.1602 -0.0118 36 1 0.9169 -5.1415 1.8707 37 1 0.0757 -4.6406 0.3842 38 1 1.9655 -8.7197 -0.9944 39 1 3.0353 -4.0627 2.4262 40 1 3.4288 -2.5004 1.6694 41 1 1.4544 -1.4734 2.7629 42 1 1.0609 -3.0356 3.5196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353572161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:36 Heat of formation + Delta-G solvation = 32.169372 kcal Electronic energy + Delta-G solvation = -26742.819523 eV Core-core repulsion = 23073.295818 eV Total energy + Delta-G solvation = -3669.523705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18807 -40.62427 -38.22040 -37.97641 -36.81525 -35.00905 -34.42398 -32.98241 -32.40782 -31.40342 -29.67777 -28.74303 -26.12919 -25.26032 -24.12987 -23.54758 -23.06460 -20.78118 -19.34610 -19.01408 -18.48705 -18.30332 -17.75165 -17.32016 -16.77430 -16.21441 -15.89909 -15.81572 -15.65261 -15.39019 -15.09379 -14.88817 -14.60785 -14.36770 -14.23443 -14.02699 -13.93717 -13.81655 -13.58725 -13.42315 -13.14262 -13.01138 -12.77623 -12.65981 -12.41433 -12.40004 -12.28857 -12.04313 -11.98066 -11.68187 -11.50261 -11.07232 -10.75778 -10.47975 -9.74143 -9.52767 -9.22151 -8.26979 -6.32281 -0.76183 -0.35679 0.87704 1.41197 1.45271 1.49745 1.52247 1.63698 1.75436 2.00744 2.12823 2.38019 2.95822 3.02552 3.09931 3.15048 3.44712 3.56665 3.61332 3.86235 3.89632 3.99815 4.02356 4.22496 4.33101 4.39986 4.42792 4.58396 4.69533 4.71950 4.74659 4.81461 4.84969 4.90308 4.96395 5.05300 5.05981 5.19516 5.37706 5.46205 5.49616 5.50400 5.55416 5.87683 6.27446 6.47647 6.54108 6.70839 6.82102 7.16877 7.34337 8.89479 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.003932 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.974948 B = 7119.049150 C = 7433.929359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.192 3.808 3 N -0.489 5.489 4 C 0.123 3.877 5 C -0.117 4.117 6 C -0.080 4.080 7 C -0.117 4.117 8 C -0.098 4.098 9 C -0.125 4.125 10 C -0.018 4.018 11 C -0.185 4.185 12 C 0.565 3.435 13 O -0.562 6.562 14 N -0.583 5.583 15 C 0.221 3.779 16 C -0.536 4.536 17 H 0.033 0.967 18 C 0.013 3.987 19 N -0.947 5.947 20 Si 0.941 3.059 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.226 1.226 24 C 0.107 3.893 25 C -0.038 4.038 26 C 0.241 3.759 27 N -0.481 5.481 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.266 0.734 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 19.739 6.120 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.039 3.961 3 N -0.198 5.198 4 C 0.002 3.998 5 C -0.136 4.136 6 C -0.100 4.100 7 C -0.135 4.135 8 C -0.117 4.117 9 C -0.127 4.127 10 C -0.044 4.044 11 C -0.191 4.191 12 C 0.352 3.648 13 O -0.442 6.442 14 N -0.313 5.313 15 C 0.100 3.900 16 C -0.575 4.575 17 H 0.051 0.949 18 C -0.185 4.185 19 N -0.588 5.588 20 Si 0.764 3.236 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.148 1.148 24 C -0.018 4.018 25 C -0.079 4.079 26 C -0.076 4.076 27 N -0.159 5.159 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.164 0.836 32 H 0.182 0.818 33 H 0.178 0.822 34 H 0.165 0.835 35 H 0.170 0.830 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.623 20.630 6.911 22.057 hybrid contribution -0.240 -1.927 -0.732 2.075 sum 3.383 18.704 6.179 19.986 Atomic orbital electron populations 1.20825 0.87005 1.04045 1.04097 1.21592 0.97881 0.86143 0.90515 1.67844 1.09004 1.27781 1.15201 1.19374 0.89027 0.94202 0.97211 1.21035 0.95266 0.95818 1.01432 1.21397 0.92989 1.00344 0.95262 1.21360 1.02117 0.91543 0.98448 1.21359 0.91656 1.00401 0.98250 1.18931 0.96095 0.92934 1.04726 1.22093 0.92725 0.98544 0.91083 1.20735 0.94792 0.94461 1.09080 1.18247 0.82158 0.83241 0.81106 1.90765 1.34882 1.79972 1.38538 1.47730 1.45187 1.13706 1.24634 1.19540 0.93227 0.79230 0.98022 1.21584 1.06524 0.95866 1.33486 0.94877 1.25797 1.00855 0.96789 0.95078 1.70048 1.40366 1.06714 1.41623 0.85818 0.79103 0.77947 0.80760 1.20311 1.21085 1.14829 1.21677 0.91827 1.02133 0.86158 1.19814 0.95336 1.04365 0.88361 1.29146 0.93196 0.91734 0.93562 1.81292 1.11152 1.10812 1.12665 0.89944 0.90689 0.88361 0.83603 0.81794 0.82238 0.83488 0.83030 0.91730 0.94906 0.92491 0.88236 0.89436 0.86318 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 9.37 71.24 0.67 -1.86 16 2 C 0.19 5.44 6.82 43.28 0.30 5.73 16 3 N -0.49 -13.57 10.20 -175.85 -1.79 -15.37 16 4 C 0.12 3.13 6.61 40.28 0.27 3.39 16 5 C -0.12 -2.24 9.97 22.34 0.22 -2.02 16 6 C -0.08 -1.10 9.94 22.05 0.22 -0.88 16 7 C -0.12 -1.64 9.96 22.05 0.22 -1.42 16 8 C -0.10 -1.83 9.77 22.35 0.22 -1.61 16 9 C -0.12 -3.06 5.74 -21.28 -0.12 -3.18 16 10 C -0.02 -0.50 7.50 23.01 0.17 -0.33 16 11 C -0.19 -5.61 4.86 -20.00 -0.10 -5.70 16 12 C 0.56 20.56 6.01 86.76 0.52 21.08 16 13 O -0.56 -25.14 15.47 -3.93 -0.06 -25.21 16 14 N -0.58 -19.97 2.47 -829.66 -2.05 -22.02 16 15 C 0.22 9.21 4.25 85.63 0.36 9.57 16 16 C -0.54 -28.60 9.94 25.60 0.25 -28.34 16 17 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 18 C 0.01 0.71 5.47 84.65 0.46 1.17 16 19 N -0.95 -57.27 13.96 21.45 0.30 -56.97 16 20 Si 0.94 40.96 27.47 68.60 1.88 42.85 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.23 -8.36 6.54 99.48 0.65 -7.71 16 24 C 0.11 2.69 5.13 86.38 0.44 3.13 16 25 C -0.04 -0.71 5.99 28.79 0.17 -0.54 16 26 C 0.24 5.47 15.44 89.43 1.38 6.85 16 27 N -0.48 -13.61 18.55 20.02 0.37 -13.24 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 1.92 6.56 -2.39 -0.02 1.91 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.15 3.91 7.31 -2.91 -0.02 3.89 16 36 H 0.06 2.34 7.13 -2.39 -0.02 2.32 16 37 H 0.03 1.46 6.78 -2.39 -0.02 1.45 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.10 2.57 8.03 -2.39 -0.02 2.55 16 40 H 0.09 2.07 4.49 -2.39 -0.01 2.06 16 41 H 0.12 2.01 8.01 -2.39 -0.02 1.99 16 42 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -75.75 362.95 5.31 -70.44 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.00 Total: 14.47 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 5.66 Total: 5.05 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -3.17 Total: -107.60 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.06 Total: -25.21 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.85 kcal Total: -75.75 5.31 -70.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353572161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.606 kcal (2) G-P(sol) polarization free energy of solvation -75.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds