Wall clock time and date at job start Tue Mar 31 2020 13:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46655 * 155.08750 * 3 2 1 5 5 C 1.37098 * 119.99792 * 263.94457 * 4 3 2 6 6 H 1.08000 * 120.00138 * 200.22121 * 5 4 3 7 7 C 1.38947 * 119.99726 * 20.22930 * 5 4 3 8 8 N 1.31405 * 120.00492 * 21.42042 * 7 5 4 9 9 Si 1.86811 * 119.99742 * 201.41914 * 7 5 4 10 10 H 1.48496 * 109.46836 * 90.00070 * 9 7 5 11 11 H 1.48495 * 109.46855 * 210.00031 * 9 7 5 12 12 H 1.48496 * 109.46892 * 329.99924 * 9 7 5 13 13 C 1.34774 * 120.00239 * 83.95831 * 4 3 2 14 14 O 1.21293 * 120.00423 * 179.97438 * 13 4 3 15 15 C 1.50706 * 120.00005 * 359.97438 * 13 4 3 16 16 C 1.52991 * 109.47275 * 180.02562 * 15 13 4 17 17 C 1.50706 * 109.47275 * 179.97438 * 16 15 13 18 18 C 1.35062 * 125.75432 * 85.02322 * 17 16 15 19 19 C 1.40436 * 107.68306 * 180.02562 * 18 17 16 20 20 C 1.36233 * 107.33806 * 359.97438 * 19 18 17 21 21 C 1.47862 * 126.05942 * 180.02562 * 20 19 18 22 22 C 1.39564 * 120.14511 * 179.69892 * 21 20 19 23 23 C 1.37967 * 119.85489 * 179.69477 * 22 21 20 24 24 C 1.38354 * 120.14040 * 0.60338 * 23 22 21 25 25 C 1.38357 * 120.29313 * 359.67226 * 24 23 22 26 26 C 1.37957 * 120.14186 * 0.02562 * 25 24 23 27 27 N 1.36310 * 125.75504 * 264.71670 * 17 16 15 28 28 H 0.97001 * 125.69278 * 359.97438 * 27 17 16 29 29 H 1.08996 * 109.46806 * 35.08513 * 3 2 1 30 30 H 1.08994 * 109.47239 * 275.08736 * 3 2 1 31 31 H 0.97001 * 120.00150 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47063 * 60.00049 * 15 13 4 33 33 H 1.08998 * 109.46625 * 300.00625 * 15 13 4 34 34 H 1.09000 * 109.47439 * 59.99785 * 16 15 13 35 35 H 1.08999 * 109.46892 * 299.99791 * 16 15 13 36 36 H 1.08004 * 126.15501 * 0.03685 * 18 17 16 37 37 H 1.08005 * 126.32724 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.07192 * 359.97438 * 22 21 20 39 39 H 1.07999 * 119.92785 * 180.29641 * 23 22 21 40 40 H 1.07998 * 119.85442 * 179.69496 * 24 23 22 41 41 H 1.08003 * 119.93028 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.07361 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0958 1.2536 -0.5818 5 6 3.4423 1.3047 -1.9073 6 1 4.0912 2.0900 -2.2660 7 6 2.9584 0.3462 -2.7893 8 7 1.8761 -0.3360 -2.4893 9 14 3.8466 0.0273 -4.4015 10 1 4.8692 -1.0308 -4.2023 11 1 2.8680 -0.4166 -5.4263 12 1 4.5086 1.2760 -4.8572 13 6 3.2040 2.3560 0.1859 14 8 3.6082 3.3932 -0.2956 15 6 2.8229 2.2999 1.6429 16 6 3.0377 3.6744 2.2796 17 6 2.6560 3.6185 3.7364 18 6 3.4571 3.2180 4.7473 19 6 2.7209 3.3155 5.9393 20 6 1.4813 3.7776 5.6141 21 6 0.3726 4.0336 6.5584 22 6 -0.8505 4.5152 6.0893 23 6 -1.8830 4.7460 6.9748 24 6 -1.7039 4.5129 8.3267 25 6 -0.4921 4.0410 8.7990 26 6 0.5464 3.8002 7.9234 27 7 1.4458 3.9690 4.2567 28 1 0.6858 4.2968 3.7509 29 1 2.9717 -0.8401 -0.5907 30 1 2.9715 -0.0903 1.0236 31 1 1.5382 -1.0049 -3.1052 32 1 3.4427 1.5622 2.1525 33 1 1.7739 2.0178 1.7334 34 1 2.4176 4.4118 1.7699 35 1 4.0866 3.9567 2.1890 36 1 4.4799 2.8834 4.6556 37 1 3.0725 3.0695 6.9304 38 1 -0.9898 4.7025 5.0348 39 1 -2.8314 5.1141 6.6124 40 1 -2.5137 4.6999 9.0164 41 1 -0.3588 3.8607 9.8555 42 1 1.4917 3.4314 8.2932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355710390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:06 Heat of formation + Delta-G solvation = 61.744774 kcal Electronic energy + Delta-G solvation = -25341.549789 eV Core-core repulsion = 21673.308570 eV Total energy + Delta-G solvation = -3668.241220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.25646 -39.04288 -38.78875 -35.86922 -34.43721 -33.43178 -31.95151 -31.55493 -31.40223 -30.60325 -27.82381 -27.30687 -25.26553 -23.59857 -22.92047 -22.07446 -20.36314 -19.81109 -19.04646 -17.94372 -17.87905 -16.60221 -16.39211 -15.97543 -15.19723 -14.95188 -14.69760 -14.55499 -14.42938 -14.11850 -13.83901 -13.53136 -13.36172 -13.02832 -12.96818 -12.74775 -12.60210 -12.51588 -12.08781 -11.74240 -11.66926 -11.53068 -11.45005 -11.20937 -11.18944 -11.17088 -10.77013 -10.55071 -10.41693 -10.31146 -9.55021 -9.28092 -9.19493 -8.85335 -8.63691 -8.05518 -7.50550 -6.52450 -4.03540 0.80539 1.17127 2.41401 3.01266 3.08657 3.19925 3.21492 3.25222 3.53745 3.75723 3.78081 3.95908 4.10246 4.56055 4.63437 4.69521 4.72494 4.86567 4.89645 5.11890 5.19644 5.20102 5.28170 5.33906 5.42775 5.50082 5.61338 5.68524 5.70886 5.82290 5.91203 6.07935 6.08473 6.14438 6.22177 6.27760 6.32284 6.40123 6.44993 6.51417 6.73395 7.04446 7.16163 7.45186 7.56384 7.89106 8.25574 8.72084 8.97948 9.17369 9.71438 10.53807 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.002448 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.418691 B =11433.760590 C =12069.505332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.246 3.754 3 C 0.222 3.778 4 N -0.443 5.443 5 C -0.315 4.315 6 H 0.108 0.892 7 C 0.032 3.968 8 N -0.876 5.876 9 Si 0.927 3.073 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.456 3.544 14 O -0.574 6.574 15 C -0.130 4.130 16 C -0.035 4.035 17 C 0.049 3.951 18 C -0.200 4.200 19 C -0.166 4.166 20 C 0.033 3.967 21 C -0.002 4.002 22 C -0.128 4.128 23 C -0.111 4.111 24 C -0.131 4.131 25 C -0.112 4.112 26 C -0.109 4.109 27 N -0.549 5.549 28 H 0.412 0.588 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.273 0.727 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 4.390 19.590 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.072 4.072 3 C 0.094 3.906 4 N -0.164 5.164 5 C -0.442 4.442 6 H 0.126 0.874 7 C -0.172 4.172 8 N -0.514 5.514 9 Si 0.753 3.247 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.245 3.755 14 O -0.457 6.457 15 C -0.171 4.171 16 C -0.073 4.073 17 C -0.065 4.065 18 C -0.224 4.224 19 C -0.191 4.191 20 C -0.078 4.078 21 C -0.003 4.003 22 C -0.146 4.146 23 C -0.129 4.129 24 C -0.149 4.149 25 C -0.130 4.130 26 C -0.128 4.128 27 N -0.143 5.143 28 H 0.249 0.751 29 H 0.141 0.859 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.706 4.814 19.143 19.924 hybrid contribution 0.131 -0.295 -1.236 1.277 sum -2.575 4.519 17.907 18.647 Atomic orbital electron populations 1.80892 1.13622 1.08563 1.12249 1.29302 0.95380 0.92570 0.89992 1.18694 0.81635 0.91649 0.98632 1.43632 1.56641 1.06382 1.09711 1.19705 1.28021 1.14129 0.82374 0.87447 1.25300 0.94804 0.97390 0.99686 1.69842 1.18052 1.25029 1.38524 0.85905 0.78996 0.79021 0.80728 1.20112 1.21162 1.19328 1.20150 0.83690 0.83672 0.87984 1.90546 1.50335 1.29668 1.75156 1.21607 1.02573 0.98154 0.94748 1.19888 1.03590 0.97309 0.86547 1.20669 0.85460 1.04354 0.96051 1.20640 1.00395 1.09849 0.91472 1.20863 0.92777 1.06754 0.98701 1.18605 0.95834 1.10828 0.82515 1.18134 0.91534 0.98344 0.92293 1.21120 0.93031 1.00911 0.99573 1.21034 0.98653 0.99746 0.93460 1.21180 0.97636 1.00504 0.95572 1.21069 0.93190 0.99161 0.99628 1.21087 0.99487 1.00472 0.91706 1.42029 1.13215 1.52490 1.06597 0.75117 0.85856 0.89642 0.91634 0.89416 0.90598 0.90755 0.88665 0.84301 0.84665 0.86650 0.85973 0.86126 0.85797 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.17 18.54 42.16 0.78 -10.39 16 2 C 0.25 5.36 12.82 -20.76 -0.27 5.10 16 3 C 0.22 4.29 4.91 -6.83 -0.03 4.25 16 4 N -0.44 -10.07 2.60 -117.94 -0.31 -10.37 16 5 C -0.32 -7.97 9.27 -14.93 -0.14 -8.11 16 6 H 0.11 2.87 7.43 -52.49 -0.39 2.48 16 7 C 0.03 0.78 4.84 -17.47 -0.08 0.70 16 8 N -0.88 -22.01 9.58 55.50 0.53 -21.48 16 9 Si 0.93 19.44 29.60 -169.99 -5.03 14.41 16 10 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 11 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 13 C 0.46 9.89 7.56 -10.98 -0.08 9.81 16 14 O -0.57 -14.38 15.65 5.55 0.09 -14.30 16 15 C -0.13 -2.13 4.29 -27.88 -0.12 -2.25 16 16 C -0.03 -0.52 5.04 -27.88 -0.14 -0.66 16 17 C 0.05 0.66 6.41 -81.73 -0.52 0.14 16 18 C -0.20 -2.56 10.73 -39.88 -0.43 -2.99 16 19 C -0.17 -2.03 10.23 -39.48 -0.40 -2.43 16 20 C 0.03 0.41 6.92 -82.28 -0.57 -0.16 16 21 C 0.00 -0.02 5.87 -104.97 -0.62 -0.64 16 22 C -0.13 -1.34 9.71 -39.19 -0.38 -1.72 16 23 C -0.11 -1.02 10.03 -39.64 -0.40 -1.41 16 24 C -0.13 -1.10 10.04 -39.49 -0.40 -1.50 16 25 C -0.11 -0.95 10.03 -39.64 -0.40 -1.35 16 26 C -0.11 -1.06 9.56 -39.19 -0.37 -1.44 16 27 N -0.55 -6.90 5.99 -5.76 -0.03 -6.93 16 28 H 0.41 4.52 8.08 -40.82 -0.33 4.19 16 29 H 0.12 2.44 6.63 -51.93 -0.34 2.09 16 30 H 0.09 1.26 6.69 -51.93 -0.35 0.91 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.09 1.22 7.42 -51.93 -0.39 0.84 16 33 H 0.08 1.27 7.49 -51.93 -0.39 0.88 16 34 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 35 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 36 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.14 1.35 7.26 -52.48 -0.38 0.97 16 38 H 0.12 1.09 7.18 -52.49 -0.38 0.71 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 42 H 0.13 1.04 7.00 -52.49 -0.37 0.67 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -31.54 363.46 -8.83 -40.37 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.98 Total: 7.87 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -5.35 Total: -4.65 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.97 Total: -49.17 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.30 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.54 -8.83 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355710390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.113 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds