Wall clock time and date at job start Tue Mar 31 2020 13:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48501 * 109.47442 * 270.00123 * 3 2 1 5 5 H 1.48509 * 109.47074 * 30.00009 * 3 2 1 6 6 H 1.48504 * 109.47497 * 149.99639 * 3 2 1 7 7 C 1.37880 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00177 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99723 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46609 * 180.02562 * 9 7 2 11 11 C 1.31403 * 119.99599 * 114.97417 * 10 9 7 12 12 C 1.41636 * 119.69357 * 5.50805 * 11 10 9 13 13 C 1.35516 * 119.45540 * 179.97438 * 12 11 10 14 14 C 1.46395 * 118.87679 * 0.02562 * 13 12 11 15 15 C 1.47253 * 120.31910 * 180.02562 * 14 13 12 16 16 O 1.21643 * 119.99588 * 351.98675 * 15 14 13 17 17 N 1.34770 * 120.00324 * 171.98363 * 15 14 13 18 18 C 1.46536 * 124.97379 * 5.59762 * 17 15 14 19 19 C 1.53739 * 105.19712 * 179.97438 * 18 17 15 20 20 C 1.51212 * 104.57178 * 359.97438 * 19 18 17 21 21 C 1.38181 * 130.97903 * 180.02562 * 20 19 18 22 22 C 1.38225 * 120.14947 * 179.97438 * 21 20 19 23 23 C 1.38305 * 119.83227 * 359.97438 * 22 21 20 24 24 C 1.37830 * 120.22862 * 0.02562 * 23 22 21 25 25 C 1.38577 * 108.55018 * 359.77124 * 20 19 18 26 26 C 1.37850 * 119.36727 * 0.02562 * 14 13 12 27 27 N 1.34798 * 120.48562 * 359.97438 * 26 14 13 28 28 H 0.96992 * 119.40537 * 180.02562 * 27 26 14 29 29 H 0.96999 * 120.00563 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47108 * 60.00288 * 9 7 2 31 31 H 1.09004 * 109.46864 * 299.99892 * 9 7 2 32 32 H 1.07999 * 120.27149 * 0.02562 * 12 11 10 33 33 H 1.08004 * 120.56106 * 180.29343 * 13 12 11 34 34 H 1.09005 * 110.30094 * 298.89337 * 18 17 15 35 35 H 1.09000 * 110.30059 * 61.02744 * 18 17 15 36 36 H 1.09002 * 110.41612 * 118.77453 * 19 18 17 37 37 H 1.09005 * 110.41742 * 241.22773 * 19 18 17 38 38 H 1.07996 * 119.92585 * 359.93408 * 21 20 19 39 39 H 1.08004 * 120.08791 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.88599 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.86388 * 180.02562 * 24 23 22 42 42 H 1.08010 * 119.76009 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.6722 -3.0342 -1.0305 12 6 5.0226 -2.1573 -2.0861 13 6 5.7165 -2.6357 -3.1473 14 6 6.0845 -4.0524 -3.1708 15 6 6.8389 -4.6057 -4.3079 16 8 7.0331 -3.9255 -5.2976 17 7 7.3143 -5.8656 -4.2523 18 6 7.0473 -6.8170 -3.1703 19 6 7.8011 -8.0976 -3.5645 20 6 8.4584 -7.7612 -4.8841 21 6 9.2625 -8.5179 -5.7149 22 6 9.7501 -7.9774 -6.8900 23 6 9.4307 -6.6763 -7.2333 24 6 8.6290 -5.9176 -6.4079 25 6 8.1286 -6.4581 -5.2213 26 6 5.7181 -4.8636 -2.1182 27 7 5.0279 -4.3607 -1.0753 28 1 4.7785 -4.9456 -0.3428 29 1 -0.4851 0.8400 0.0004 30 1 3.8745 -0.6800 0.8912 31 1 3.8752 -0.6803 -0.8889 32 1 4.7397 -1.1158 -2.0453 33 1 5.9970 -1.9819 -3.9599 34 1 7.4274 -6.4307 -2.2245 35 1 5.9780 -7.0150 -3.0962 36 1 8.5543 -8.3414 -2.8153 37 1 7.1040 -8.9265 -3.6879 38 1 9.5111 -9.5336 -5.4452 39 1 10.3782 -8.5699 -7.5388 40 1 9.8115 -6.2530 -8.1511 41 1 8.3830 -4.9024 -6.6820 42 1 5.9860 -5.9099 -2.1292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362665580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:36 Heat of formation + Delta-G solvation = 93.928851 kcal Electronic energy + Delta-G solvation = -25682.356118 eV Core-core repulsion = 22015.510505 eV Total energy + Delta-G solvation = -3666.845613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62615 -39.96955 -38.54879 -36.78308 -35.07151 -33.09445 -32.69005 -32.49465 -30.94792 -29.60178 -29.06037 -27.29669 -24.97895 -23.75424 -23.19144 -22.85313 -21.71184 -20.82171 -20.47494 -18.12404 -17.42133 -16.99575 -16.80987 -16.68294 -16.04115 -15.51221 -15.46700 -14.93602 -14.65570 -14.55766 -14.29380 -14.24314 -14.03655 -13.75275 -13.15437 -13.05945 -12.92951 -12.59082 -12.36292 -12.32017 -12.02381 -11.89570 -11.27163 -11.22023 -11.11045 -10.62356 -10.59174 -10.48156 -10.06478 -10.01038 -9.74173 -9.38607 -9.07024 -8.71990 -8.34385 -8.07973 -6.88581 -6.10848 -4.09213 0.83344 1.10212 1.22842 1.75604 2.44227 2.95320 2.99588 3.25018 3.32991 3.34355 3.53813 3.92933 3.95622 4.00924 4.26791 4.36620 4.47102 4.56436 4.72595 4.78100 4.87551 4.96065 5.01184 5.14461 5.18635 5.23960 5.29911 5.36650 5.40010 5.52240 5.73344 5.73985 5.98462 6.14438 6.17140 6.24474 6.32578 6.42503 6.50818 6.77225 6.80208 6.98577 7.09501 7.14242 7.39371 7.64028 7.92999 8.35209 8.79655 8.97263 9.49199 11.02214 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030198 B = 0.002429 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.988883 B =11525.698183 C =12134.025156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.510 4.510 8 H 0.076 0.924 9 C 0.161 3.839 10 N -0.554 5.554 11 C 0.347 3.653 12 C -0.192 4.192 13 C -0.020 4.020 14 C -0.277 4.277 15 C 0.591 3.409 16 O -0.522 6.522 17 N -0.558 5.558 18 C 0.083 3.917 19 C -0.086 4.086 20 C -0.144 4.144 21 C -0.079 4.079 22 C -0.146 4.146 23 C -0.093 4.093 24 C -0.132 4.132 25 C 0.155 3.845 26 C 0.164 3.836 27 N -0.581 5.581 28 H 0.419 0.581 29 H 0.265 0.735 30 H 0.039 0.961 31 H 0.004 0.996 32 H 0.152 0.848 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.909 -19.938 -10.115 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.548 4.548 8 H 0.095 0.905 9 C 0.033 3.967 10 N -0.273 5.273 11 C 0.074 3.926 12 C -0.215 4.215 13 C -0.045 4.045 14 C -0.291 4.291 15 C 0.386 3.614 16 O -0.398 6.398 17 N -0.282 5.282 18 C -0.039 4.039 19 C -0.123 4.123 20 C -0.147 4.147 21 C -0.098 4.098 22 C -0.166 4.166 23 C -0.112 4.112 24 C -0.153 4.153 25 C 0.060 3.940 26 C 0.029 3.971 27 N -0.192 5.192 28 H 0.256 0.744 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.158 0.842 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 20.275 -19.308 -9.589 29.594 hybrid contribution 0.279 1.236 -0.314 1.305 sum 20.554 -18.072 -9.903 29.106 Atomic orbital electron populations 1.69876 1.06132 1.27029 1.50580 1.24892 0.94802 0.98876 0.94661 0.86855 0.80412 0.83794 0.78753 1.19969 1.20886 1.19020 1.20933 0.88061 0.94849 1.50997 0.90544 1.20282 0.96868 0.83542 0.96051 1.72150 1.12942 1.20062 1.22196 1.18720 0.96471 0.84039 0.93336 1.21819 1.03218 1.01544 0.94890 1.21819 0.93718 0.91987 0.96947 1.19758 1.16017 0.95824 0.97540 1.17715 0.77984 0.78793 0.86916 1.90745 1.58091 1.58219 1.32737 1.45785 1.48411 1.12780 1.21198 1.22637 1.01036 0.89097 0.91149 1.21134 0.99384 0.97019 0.94730 1.19982 1.02688 0.94025 0.98037 1.20332 0.96531 0.99199 0.93722 1.21012 1.02194 0.95930 0.97415 1.20957 0.97066 0.94095 0.99078 1.21015 0.99397 1.01821 0.93044 1.18357 0.92792 0.92051 0.90791 1.23770 0.87501 0.99977 0.85846 1.41100 1.48860 1.08985 1.20274 0.74371 0.92469 0.94382 0.97889 0.83064 0.84899 0.88755 0.88746 0.88812 0.88798 0.85844 0.85762 0.85551 0.84194 0.79395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -15.06 9.94 -34.44 -0.34 -15.40 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.16 4.07 5.04 -5.19 -0.03 4.04 16 10 N -0.55 -12.43 10.64 -61.53 -0.65 -13.09 16 11 C 0.35 6.38 7.64 -156.44 -1.19 5.19 16 12 C -0.19 -3.44 9.21 -39.26 -0.36 -3.80 16 13 C -0.02 -0.32 9.83 -37.27 -0.37 -0.69 16 14 C -0.28 -3.72 6.01 -103.10 -0.62 -4.34 16 15 C 0.59 8.12 7.74 -12.60 -0.10 8.03 16 16 O -0.52 -8.75 14.69 5.24 0.08 -8.67 16 17 N -0.56 -5.99 3.13 -121.57 -0.38 -6.37 16 18 C 0.08 0.49 5.05 -3.64 -0.02 0.48 16 19 C -0.09 -0.43 6.94 -27.25 -0.19 -0.62 16 20 C -0.14 -1.21 6.23 -104.27 -0.65 -1.86 16 21 C -0.08 -0.58 10.04 -39.61 -0.40 -0.98 16 22 C -0.15 -1.10 10.06 -39.56 -0.40 -1.50 16 23 C -0.09 -0.83 10.02 -39.71 -0.40 -1.23 16 24 C -0.13 -1.52 9.46 -39.20 -0.37 -1.89 16 25 C 0.16 1.72 6.62 -83.59 -0.55 1.17 16 26 C 0.16 1.70 9.78 -16.39 -0.16 1.54 16 27 N -0.58 -7.51 5.30 -11.84 -0.06 -7.57 16 28 H 0.42 4.35 8.89 -40.82 -0.36 3.99 16 29 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 31 H 0.00 0.09 4.49 -51.93 -0.23 -0.15 16 32 H 0.15 2.86 5.60 -52.49 -0.29 2.56 16 33 H 0.13 2.00 7.83 -52.48 -0.41 1.59 16 34 H 0.09 0.39 6.74 -51.93 -0.35 0.04 16 35 H 0.09 0.39 6.76 -51.93 -0.35 0.04 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 40 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 41 H 0.14 1.84 6.29 -52.49 -0.33 1.51 16 42 H 0.19 1.06 2.68 -62.60 -0.17 0.89 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -37.55 344.32 -10.55 -48.09 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.58 Total: 2.54 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -6.24 Total: -9.91 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.32 Total: -54.11 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.55 -10.55 -48.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362665580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.022 kcal (2) G-P(sol) polarization free energy of solvation -37.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds