Wall clock time and date at job start Tue Mar 31 2020 13:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48501 * 109.47442 * 270.00123 * 3 2 1 5 5 H 1.48509 * 109.47074 * 30.00009 * 3 2 1 6 6 H 1.48504 * 109.47497 * 149.99639 * 3 2 1 7 7 C 1.37880 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00177 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99723 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46609 * 180.02562 * 9 7 2 11 11 C 1.31403 * 119.99599 * 114.97417 * 10 9 7 12 12 C 1.41636 * 119.69357 * 5.50805 * 11 10 9 13 13 C 1.35516 * 119.45540 * 179.97438 * 12 11 10 14 14 C 1.46395 * 118.87679 * 0.02562 * 13 12 11 15 15 C 1.47253 * 120.31910 * 180.02562 * 14 13 12 16 16 O 1.21643 * 119.99588 * 351.98675 * 15 14 13 17 17 N 1.34770 * 120.00324 * 171.98363 * 15 14 13 18 18 C 1.46536 * 124.97379 * 5.59762 * 17 15 14 19 19 C 1.53739 * 105.19712 * 179.97438 * 18 17 15 20 20 C 1.51212 * 104.57178 * 359.97438 * 19 18 17 21 21 C 1.38181 * 130.97903 * 180.02562 * 20 19 18 22 22 C 1.38225 * 120.14947 * 179.97438 * 21 20 19 23 23 C 1.38305 * 119.83227 * 359.97438 * 22 21 20 24 24 C 1.37830 * 120.22862 * 0.02562 * 23 22 21 25 25 C 1.38577 * 108.55018 * 359.77124 * 20 19 18 26 26 C 1.37850 * 119.36727 * 0.02562 * 14 13 12 27 27 N 1.34798 * 120.48562 * 359.97438 * 26 14 13 28 28 H 0.96992 * 119.40537 * 180.02562 * 27 26 14 29 29 H 0.96999 * 120.00563 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47108 * 60.00288 * 9 7 2 31 31 H 1.09004 * 109.46864 * 299.99892 * 9 7 2 32 32 H 1.07999 * 120.27149 * 0.02562 * 12 11 10 33 33 H 1.08004 * 120.56106 * 180.29343 * 13 12 11 34 34 H 1.09005 * 110.30094 * 298.89337 * 18 17 15 35 35 H 1.09000 * 110.30059 * 61.02744 * 18 17 15 36 36 H 1.09002 * 110.41612 * 118.77453 * 19 18 17 37 37 H 1.09005 * 110.41742 * 241.22773 * 19 18 17 38 38 H 1.07996 * 119.92585 * 359.93408 * 21 20 19 39 39 H 1.08004 * 120.08791 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.88599 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.86388 * 180.02562 * 24 23 22 42 42 H 1.08010 * 119.76009 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.6722 -3.0342 -1.0305 12 6 5.0226 -2.1573 -2.0861 13 6 5.7165 -2.6357 -3.1473 14 6 6.0845 -4.0524 -3.1708 15 6 6.8389 -4.6057 -4.3079 16 8 7.0331 -3.9255 -5.2976 17 7 7.3143 -5.8656 -4.2523 18 6 7.0473 -6.8170 -3.1703 19 6 7.8011 -8.0976 -3.5645 20 6 8.4584 -7.7612 -4.8841 21 6 9.2625 -8.5179 -5.7149 22 6 9.7501 -7.9774 -6.8900 23 6 9.4307 -6.6763 -7.2333 24 6 8.6290 -5.9176 -6.4079 25 6 8.1286 -6.4581 -5.2213 26 6 5.7181 -4.8636 -2.1182 27 7 5.0279 -4.3607 -1.0753 28 1 4.7785 -4.9456 -0.3428 29 1 -0.4851 0.8400 0.0004 30 1 3.8745 -0.6800 0.8912 31 1 3.8752 -0.6803 -0.8889 32 1 4.7397 -1.1158 -2.0453 33 1 5.9970 -1.9819 -3.9599 34 1 7.4274 -6.4307 -2.2245 35 1 5.9780 -7.0150 -3.0962 36 1 8.5543 -8.3414 -2.8153 37 1 7.1040 -8.9265 -3.6879 38 1 9.5111 -9.5336 -5.4452 39 1 10.3782 -8.5699 -7.5388 40 1 9.8115 -6.2530 -8.1511 41 1 8.3830 -4.9024 -6.6820 42 1 5.9860 -5.9099 -2.1292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362665580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:36 Heat of formation + Delta-G solvation = 67.166048 kcal Electronic energy + Delta-G solvation = -25683.516640 eV Core-core repulsion = 22015.510505 eV Total energy + Delta-G solvation = -3668.006135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.42961 -41.11041 -39.50814 -37.54725 -36.60954 -34.62342 -34.33667 -33.31516 -32.05289 -30.49693 -30.04736 -28.84471 -25.96988 -24.82817 -24.42311 -23.93839 -22.39624 -22.24003 -21.46667 -19.27160 -18.86267 -18.51835 -17.85794 -17.31996 -16.87711 -16.80505 -16.49394 -16.29552 -15.83780 -15.74923 -15.61938 -15.15952 -15.06824 -14.83040 -14.49548 -14.26339 -13.71927 -13.63277 -13.55501 -13.35520 -13.05439 -12.85909 -12.67343 -12.51749 -12.30583 -12.07814 -11.90018 -11.78119 -11.34835 -11.24626 -11.09449 -11.05284 -10.87476 -10.03269 -9.69806 -8.80540 -8.37477 -8.27785 -6.41108 -0.12135 0.21259 0.46372 0.60932 1.30370 1.32568 1.44204 1.63624 1.81032 1.88837 2.28699 2.64048 2.90606 2.96350 3.28533 3.34249 3.59206 3.74282 3.79307 3.95739 4.10212 4.16489 4.19881 4.24712 4.32917 4.37400 4.45827 4.55419 4.66166 4.72650 4.96298 4.98984 5.02079 5.07241 5.17456 5.19178 5.24492 5.41717 5.48495 5.49299 5.55727 5.66568 5.91027 6.00673 6.13277 6.25077 6.27776 6.61473 6.96108 7.13098 7.30395 8.80541 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030198 B = 0.002429 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.988883 B =11525.698183 C =12134.025156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.523 4.523 8 H 0.026 0.974 9 C 0.173 3.827 10 N -0.610 5.610 11 C 0.368 3.632 12 C -0.241 4.241 13 C 0.009 3.991 14 C -0.301 4.301 15 C 0.589 3.411 16 O -0.568 6.568 17 N -0.556 5.556 18 C 0.060 3.940 19 C -0.077 4.077 20 C -0.139 4.139 21 C -0.081 4.081 22 C -0.142 4.142 23 C -0.105 4.105 24 C -0.163 4.163 25 C 0.118 3.882 26 C 0.203 3.797 27 N -0.564 5.564 28 H 0.437 0.563 29 H 0.270 0.730 30 H 0.029 0.971 31 H 0.012 0.988 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.137 0.863 41 H 0.108 0.892 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.738 -23.348 -10.068 34.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.173 1.173 7 C -0.561 4.561 8 H 0.044 0.956 9 C 0.043 3.957 10 N -0.333 5.333 11 C 0.097 3.903 12 C -0.264 4.264 13 C -0.015 4.015 14 C -0.314 4.314 15 C 0.383 3.617 16 O -0.448 6.448 17 N -0.278 5.278 18 C -0.060 4.060 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.099 4.099 22 C -0.161 4.161 23 C -0.124 4.124 24 C -0.183 4.183 25 C 0.023 3.977 26 C 0.068 3.932 27 N -0.176 5.176 28 H 0.277 0.723 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.030 0.970 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.155 0.845 41 H 0.126 0.874 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 23.141 -22.814 -9.534 33.865 hybrid contribution -0.428 1.954 -0.581 2.083 sum 22.713 -20.859 -10.115 32.455 Atomic orbital electron populations 1.70035 1.08140 1.28440 1.51957 1.25905 0.95751 1.03320 0.93914 0.85664 0.79419 0.78064 0.79568 1.18665 1.19979 1.17330 1.21194 0.90792 0.93125 1.51013 0.95580 1.19904 0.93822 0.86097 0.95855 1.72100 1.18045 1.18528 1.24633 1.18955 0.93631 0.85842 0.91873 1.21607 1.07046 1.01196 0.96586 1.22009 0.90522 0.93571 0.95396 1.19784 1.17488 0.95056 0.99060 1.17679 0.77972 0.79795 0.86239 1.90732 1.59986 1.59846 1.34251 1.45768 1.47531 1.12211 1.22335 1.23153 1.03165 0.88895 0.90784 1.21260 1.00101 0.96830 0.93225 1.20442 1.01831 0.92560 0.99355 1.20784 0.95479 1.00516 0.93091 1.21405 1.01578 0.95189 0.97921 1.21155 0.96931 0.94964 0.99303 1.21011 1.01417 1.01122 0.94790 1.18653 0.94233 0.93642 0.91159 1.24656 0.83814 1.01625 0.83115 1.41192 1.47789 1.07181 1.21418 0.72258 0.92108 0.95297 0.97015 0.84893 0.84923 0.86093 0.86148 0.86221 0.86333 0.82526 0.83077 0.84518 0.87361 0.73692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 2 C 0.01 0.53 5.47 84.66 0.46 1.00 16 3 Si 0.95 45.50 27.47 68.60 1.88 47.39 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 7 C -0.52 -32.46 9.94 25.60 0.25 -32.21 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.17 9.03 5.04 85.63 0.43 9.47 16 10 N -0.61 -28.08 10.64 -348.57 -3.71 -31.79 16 11 C 0.37 13.47 7.64 134.52 1.03 14.50 16 12 C -0.24 -8.79 9.21 22.48 0.21 -8.58 16 13 C 0.01 0.30 9.83 23.76 0.23 0.53 16 14 C -0.30 -7.54 6.01 -18.88 -0.11 -7.66 16 15 C 0.59 15.69 7.74 86.61 0.67 16.36 16 16 O -0.57 -19.84 14.69 -4.17 -0.06 -19.90 16 17 N -0.56 -10.63 3.13 -656.79 -2.05 -12.69 16 18 C 0.06 0.40 5.05 86.62 0.44 0.84 16 19 C -0.08 -0.33 6.94 30.26 0.21 -0.12 16 20 C -0.14 -1.80 6.23 -19.63 -0.12 -1.92 16 21 C -0.08 -0.85 10.04 22.25 0.22 -0.63 16 22 C -0.14 -1.74 10.06 22.28 0.22 -1.52 16 23 C -0.11 -1.82 10.02 22.19 0.22 -1.59 16 24 C -0.16 -3.85 9.46 22.52 0.21 -3.63 16 25 C 0.12 2.44 6.62 38.30 0.25 2.69 16 26 C 0.20 3.42 9.78 84.15 0.82 4.24 16 27 N -0.56 -13.07 5.30 -191.37 -1.01 -14.09 16 28 H 0.44 7.58 8.89 -92.71 -0.82 6.75 16 29 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 30 H 0.03 1.53 7.20 -2.39 -0.02 1.51 16 31 H 0.01 0.61 4.49 -2.38 -0.01 0.60 16 32 H 0.13 5.28 5.60 -2.91 -0.02 5.26 16 33 H 0.13 4.12 7.83 -2.91 -0.02 4.10 16 34 H 0.12 0.20 6.74 -2.38 -0.02 0.18 16 35 H 0.12 0.21 6.76 -2.39 -0.02 0.19 16 36 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.12 0.03 8.14 -2.38 -0.02 0.01 16 38 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 39 H 0.15 0.99 8.06 -2.91 -0.02 0.96 16 40 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.11 3.17 6.29 -2.91 -0.02 3.15 16 42 H 0.25 1.25 2.68 -12.41 -0.03 1.21 16 Total: -1.00 -91.55 344.32 1.19 -90.36 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.19 Total: 9.68 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.66 Total: -8.25 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -6.48 Total: -119.26 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.06 Total: -19.90 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.39 kcal Total: -91.55 1.19 -90.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362665580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.521 kcal (2) G-P(sol) polarization free energy of solvation -91.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds