Wall clock time and date at job start Tue Mar 31 2020 13:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 120.00354 * 2 1 4 4 H 1.48501 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47227 * 300.00251 * 3 2 1 6 6 H 1.48500 * 109.47026 * 60.00303 * 3 2 1 7 7 C 1.37879 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00330 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99652 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.38265 * 120.00035 * 180.02562 * 10 9 7 12 12 N 1.32431 * 119.82750 * 5.56479 * 11 10 9 13 13 C 1.31842 * 121.77485 * 180.31701 * 12 11 10 14 14 C 1.38382 * 121.22326 * 359.70000 * 13 12 11 15 15 C 1.38329 * 119.50878 * 0.02562 * 14 13 12 16 16 C 1.39994 * 118.36608 * 0.02562 * 15 14 13 17 17 C 1.47393 * 120.60957 * 179.97438 * 16 15 14 18 18 O 1.21609 * 120.00267 * 228.73381 * 17 16 15 19 19 N 1.34781 * 119.99726 * 48.74197 * 17 16 15 20 20 C 1.46534 * 124.97624 * 355.10032 * 19 17 16 21 21 C 1.53741 * 105.19691 * 179.97438 * 20 19 17 22 22 C 1.51219 * 104.56744 * 0.02562 * 21 20 19 23 23 C 1.38179 * 130.97627 * 179.97438 * 22 21 20 24 24 C 1.38225 * 120.15390 * 179.97438 * 23 22 21 25 25 C 1.38301 * 119.82761 * 0.02562 * 24 23 22 26 26 C 1.37837 * 120.22732 * 359.97438 * 25 24 23 27 27 C 1.38570 * 108.55493 * 359.75615 * 22 21 20 28 28 H 0.97000 * 119.99816 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47397 * 59.99847 * 9 7 2 30 30 H 1.08999 * 109.46624 * 299.99198 * 9 7 2 31 31 H 0.97006 * 119.99657 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.39047 * 179.72230 * 13 12 11 33 33 H 1.08000 * 120.24770 * 180.02562 * 14 13 12 34 34 H 1.07998 * 120.82144 * 180.02562 * 15 14 13 35 35 H 1.09003 * 110.29885 * 298.91242 * 20 19 17 36 36 H 1.09000 * 110.29678 * 61.05104 * 20 19 17 37 37 H 1.09001 * 110.40884 * 118.77107 * 21 20 19 38 38 H 1.08992 * 110.41834 * 241.22677 * 21 20 19 39 39 H 1.08004 * 119.91974 * 359.97438 * 23 22 21 40 40 H 1.07996 * 120.08293 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.88309 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.85577 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6128 -0.0015 11 6 1.7420 -4.9163 -0.0029 12 7 0.4444 -5.1561 -0.1160 13 6 -0.0374 -6.3833 -0.1156 14 6 0.7969 -7.4815 -0.0025 15 6 2.1621 -7.2910 0.1129 16 6 2.6532 -5.9800 0.1115 17 6 4.0990 -5.7200 0.2323 18 8 4.5048 -4.9021 1.0355 19 7 4.9714 -6.3887 -0.5477 20 6 4.6144 -7.4652 -1.4756 21 6 5.9410 -7.8967 -2.1219 22 6 6.9817 -7.0012 -1.4882 23 6 8.3489 -6.9280 -1.6748 24 6 9.0983 -6.0084 -0.9653 25 6 8.4763 -5.1610 -0.0666 26 6 7.1128 -5.2303 0.1230 27 6 6.3483 -6.1533 -0.5938 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5574 0.8881 31 1 3.1566 -3.4355 -0.0010 32 1 -1.1030 -6.5343 -0.2055 33 1 0.3852 -8.4800 -0.0044 34 1 2.8328 -8.1328 0.2019 35 1 4.1688 -8.2994 -0.9335 36 1 3.9259 -7.0964 -2.2358 37 1 6.1513 -8.9422 -1.8965 38 1 5.9080 -7.7383 -3.1997 39 1 8.8330 -7.5909 -2.3768 40 1 10.1667 -5.9519 -1.1124 41 1 9.0610 -4.4424 0.4885 42 1 6.6334 -4.5659 0.8266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362667622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:33 Heat of formation + Delta-G solvation = 42.817487 kcal Electronic energy + Delta-G solvation = -26456.602604 eV Core-core repulsion = 22787.540636 eV Total energy + Delta-G solvation = -3669.061968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.33518 -39.85549 -38.24612 -36.49824 -35.28242 -32.71029 -32.59661 -32.21937 -30.21682 -29.45673 -29.15589 -26.69440 -24.86759 -23.55261 -23.26295 -22.59027 -21.45150 -21.28800 -19.93353 -17.72573 -17.40997 -16.72158 -16.39520 -16.21808 -15.89373 -15.68266 -15.25091 -14.62501 -14.55525 -14.30086 -14.10113 -13.80662 -13.68279 -13.30859 -12.97669 -12.92728 -12.71610 -12.41076 -12.24740 -12.16224 -12.07724 -11.92636 -11.71756 -11.07161 -10.96318 -10.86841 -10.32266 -10.24642 -9.97580 -9.84172 -9.49145 -9.35950 -8.95857 -8.88671 -8.54927 -7.86671 -7.05525 -6.15849 -4.21455 1.02635 1.28242 1.38812 1.81571 2.64047 2.83640 3.25587 3.32681 3.37598 3.72345 3.99092 4.14901 4.23409 4.31598 4.37726 4.56457 4.75043 4.89596 4.95144 5.00230 5.08831 5.11367 5.20931 5.26806 5.37326 5.39581 5.52760 5.59161 5.59786 5.62534 5.79315 5.91743 6.09032 6.20850 6.33609 6.34711 6.37537 6.50322 6.78168 6.96944 7.22649 7.25718 7.51160 7.61258 7.84428 7.97469 8.04080 8.30413 8.69744 8.94200 9.43986 10.94344 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.004188 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.845880 B = 6684.432430 C = 8968.799193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.254 3.746 10 N -0.678 5.678 11 C 0.456 3.544 12 N -0.535 5.535 13 C 0.185 3.815 14 C -0.270 4.270 15 C 0.001 3.999 16 C -0.287 4.287 17 C 0.586 3.414 18 O -0.508 6.508 19 N -0.553 5.553 20 C 0.100 3.900 21 C -0.084 4.084 22 C -0.143 4.143 23 C -0.081 4.081 24 C -0.147 4.147 25 C -0.093 4.093 26 C -0.132 4.132 27 C 0.153 3.847 28 H 0.265 0.735 29 H 0.032 0.968 30 H 0.030 0.970 31 H 0.406 0.594 32 H 0.155 0.845 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.591 -20.030 -4.568 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.134 3.866 10 N -0.300 5.300 11 C 0.213 3.787 12 N -0.253 5.253 13 C 0.021 3.979 14 C -0.294 4.294 15 C -0.025 4.025 16 C -0.299 4.299 17 C 0.377 3.623 18 O -0.383 6.383 19 N -0.276 5.276 20 C -0.022 4.022 21 C -0.122 4.122 22 C -0.147 4.147 23 C -0.099 4.099 24 C -0.166 4.166 25 C -0.112 4.112 26 C -0.152 4.152 27 C 0.058 3.942 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.243 0.757 32 H 0.172 0.828 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.819 -18.396 -4.136 21.739 hybrid contribution 1.195 0.212 0.093 1.217 sum 12.014 -18.185 -4.043 22.167 Atomic orbital electron populations 1.69973 1.06019 1.27153 1.49183 1.24896 0.94912 0.99331 0.94620 0.86371 0.80014 0.82902 0.77753 1.19601 1.20745 1.20700 1.21273 0.93400 0.90483 1.52972 0.91982 1.19214 0.87994 0.81471 0.97948 1.45673 1.11120 1.02362 1.70890 1.18385 0.87873 0.85908 0.86501 1.67529 1.12450 1.23993 1.21284 1.22683 1.00006 0.86770 0.88458 1.21521 0.93647 1.00176 1.14099 1.21299 0.95794 0.94277 0.91085 1.19692 0.91847 0.94881 1.23508 1.18077 0.85545 0.79577 0.79055 1.90794 1.79387 1.33568 1.34517 1.45876 1.05127 1.36048 1.40542 1.22264 0.97957 0.89541 0.92419 1.21103 0.91012 0.99381 1.00670 1.20006 0.94292 0.99757 1.00595 1.20314 0.91463 0.98724 0.99447 1.20992 0.99754 0.97402 0.98460 1.20953 0.93764 0.98625 0.97817 1.21048 0.93530 0.99355 1.01316 1.18413 0.83115 0.96213 0.96499 0.92539 0.94995 0.95246 0.75658 0.82818 0.85238 0.85467 0.89763 0.89593 0.89189 0.89126 0.85943 0.85818 0.85535 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.54 -15.54 9.28 -34.44 -0.32 -15.86 16 8 H 0.06 1.75 7.60 -52.48 -0.40 1.35 16 9 C 0.25 6.92 5.44 -5.19 -0.03 6.89 16 10 N -0.68 -15.96 5.50 -61.40 -0.34 -16.29 16 11 C 0.46 9.43 7.47 -155.18 -1.16 8.27 16 12 N -0.53 -10.66 9.55 -12.20 -0.12 -10.77 16 13 C 0.18 2.73 11.16 -17.49 -0.20 2.54 16 14 C -0.27 -3.30 10.09 -39.49 -0.40 -3.70 16 15 C 0.00 0.02 8.62 -38.89 -0.34 -0.32 16 16 C -0.29 -4.93 5.39 -104.65 -0.56 -5.49 16 17 C 0.59 10.30 6.76 -12.53 -0.08 10.21 16 18 O -0.51 -10.52 13.78 5.27 0.07 -10.45 16 19 N -0.55 -7.96 3.13 -114.10 -0.36 -8.31 16 20 C 0.10 1.00 5.90 -3.64 -0.02 0.98 16 21 C -0.08 -0.70 6.94 -27.24 -0.19 -0.89 16 22 C -0.14 -1.62 6.23 -104.27 -0.65 -2.27 16 23 C -0.08 -0.80 10.03 -39.61 -0.40 -1.20 16 24 C -0.15 -1.48 10.06 -39.56 -0.40 -1.88 16 25 C -0.09 -1.10 10.02 -39.71 -0.40 -1.50 16 26 C -0.13 -1.94 9.46 -39.20 -0.37 -2.31 16 27 C 0.15 2.19 6.62 -83.59 -0.55 1.64 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.41 9.52 6.25 -40.82 -0.26 9.27 16 32 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.13 1.26 6.09 -52.49 -0.32 0.94 16 35 H 0.08 0.66 5.99 -51.93 -0.31 0.35 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.14 2.35 6.29 -52.49 -0.33 2.02 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -33.79 352.56 -10.85 -44.64 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.98 Total: 7.87 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -6.16 Total: -3.11 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.07 Total: -60.95 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.79 -10.85 -44.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362667622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.453 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds