Wall clock time and date at job start Tue Mar 31 2020 13:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 120.00354 * 2 1 4 4 H 1.48501 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47227 * 300.00251 * 3 2 1 6 6 H 1.48500 * 109.47026 * 60.00303 * 3 2 1 7 7 C 1.37879 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00330 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99652 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.38265 * 120.00035 * 180.02562 * 10 9 7 12 12 N 1.32431 * 119.82750 * 5.56479 * 11 10 9 13 13 C 1.31842 * 121.77485 * 180.31701 * 12 11 10 14 14 C 1.38382 * 121.22326 * 359.70000 * 13 12 11 15 15 C 1.38329 * 119.50878 * 0.02562 * 14 13 12 16 16 C 1.39994 * 118.36608 * 0.02562 * 15 14 13 17 17 C 1.47393 * 120.60957 * 179.97438 * 16 15 14 18 18 O 1.21609 * 120.00267 * 228.73381 * 17 16 15 19 19 N 1.34781 * 119.99726 * 48.74197 * 17 16 15 20 20 C 1.46534 * 124.97624 * 355.10032 * 19 17 16 21 21 C 1.53741 * 105.19691 * 179.97438 * 20 19 17 22 22 C 1.51219 * 104.56744 * 0.02562 * 21 20 19 23 23 C 1.38179 * 130.97627 * 179.97438 * 22 21 20 24 24 C 1.38225 * 120.15390 * 179.97438 * 23 22 21 25 25 C 1.38301 * 119.82761 * 0.02562 * 24 23 22 26 26 C 1.37837 * 120.22732 * 359.97438 * 25 24 23 27 27 C 1.38570 * 108.55493 * 359.75615 * 22 21 20 28 28 H 0.97000 * 119.99816 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47397 * 59.99847 * 9 7 2 30 30 H 1.08999 * 109.46624 * 299.99198 * 9 7 2 31 31 H 0.97006 * 119.99657 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.39047 * 179.72230 * 13 12 11 33 33 H 1.08000 * 120.24770 * 180.02562 * 14 13 12 34 34 H 1.07998 * 120.82144 * 180.02562 * 15 14 13 35 35 H 1.09003 * 110.29885 * 298.91242 * 20 19 17 36 36 H 1.09000 * 110.29678 * 61.05104 * 20 19 17 37 37 H 1.09001 * 110.40884 * 118.77107 * 21 20 19 38 38 H 1.08992 * 110.41834 * 241.22677 * 21 20 19 39 39 H 1.08004 * 119.91974 * 359.97438 * 23 22 21 40 40 H 1.07996 * 120.08293 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.88309 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.85577 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6128 -0.0015 11 6 1.7420 -4.9163 -0.0029 12 7 0.4444 -5.1561 -0.1160 13 6 -0.0374 -6.3833 -0.1156 14 6 0.7969 -7.4815 -0.0025 15 6 2.1621 -7.2910 0.1129 16 6 2.6532 -5.9800 0.1115 17 6 4.0990 -5.7200 0.2323 18 8 4.5048 -4.9021 1.0355 19 7 4.9714 -6.3887 -0.5477 20 6 4.6144 -7.4652 -1.4756 21 6 5.9410 -7.8967 -2.1219 22 6 6.9817 -7.0012 -1.4882 23 6 8.3489 -6.9280 -1.6748 24 6 9.0983 -6.0084 -0.9653 25 6 8.4763 -5.1610 -0.0666 26 6 7.1128 -5.2303 0.1230 27 6 6.3483 -6.1533 -0.5938 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5574 0.8881 31 1 3.1566 -3.4355 -0.0010 32 1 -1.1030 -6.5343 -0.2055 33 1 0.3852 -8.4800 -0.0044 34 1 2.8328 -8.1328 0.2019 35 1 4.1688 -8.2994 -0.9335 36 1 3.9259 -7.0964 -2.2358 37 1 6.1513 -8.9422 -1.8965 38 1 5.9080 -7.7383 -3.1997 39 1 8.8330 -7.5909 -2.3768 40 1 10.1667 -5.9519 -1.1124 41 1 9.0610 -4.4424 0.4885 42 1 6.6334 -4.5659 0.8266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362667622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:32 Heat of formation + Delta-G solvation = 21.366862 kcal Electronic energy + Delta-G solvation = -26457.532773 eV Core-core repulsion = 22787.540636 eV Total energy + Delta-G solvation = -3669.992137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40570 -41.06896 -39.45538 -37.52928 -36.94671 -34.75541 -33.79815 -33.21189 -31.57471 -30.66023 -29.98160 -28.58591 -26.04268 -25.18678 -24.17822 -23.83375 -22.88983 -22.28825 -21.05047 -19.40708 -18.51781 -17.99896 -17.85643 -17.60858 -17.03398 -16.67794 -16.48957 -16.33765 -15.80953 -15.64090 -15.20522 -15.07778 -14.93341 -14.61392 -14.18957 -14.12474 -14.10330 -13.76086 -13.61704 -13.29135 -13.21764 -12.88106 -12.85386 -12.84318 -12.50457 -12.31014 -11.96291 -11.52332 -11.37916 -11.24868 -11.21410 -10.84407 -10.67641 -10.29096 -9.75944 -8.86231 -8.60984 -8.36617 -6.52179 -0.14478 0.34957 0.41142 0.56399 1.33411 1.35042 1.47696 1.48787 1.73978 2.25977 2.49994 2.82524 2.92778 2.97743 3.18400 3.56379 3.58668 3.82629 3.85210 4.10465 4.12429 4.14318 4.20994 4.33654 4.36006 4.49479 4.58467 4.63481 4.70854 4.91697 4.93590 5.00835 5.03801 5.10847 5.20712 5.24385 5.30349 5.41892 5.45018 5.49288 5.60273 5.71551 5.76762 6.07018 6.12202 6.22517 6.55508 6.62045 6.81917 7.17497 7.34616 8.75283 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.004188 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.845880 B = 6684.432430 C = 8968.799193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.978 3.022 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.567 4.567 8 H 0.058 0.942 9 C 0.285 3.715 10 N -0.703 5.703 11 C 0.423 3.577 12 N -0.581 5.581 13 C 0.166 3.834 14 C -0.232 4.232 15 C 0.009 3.991 16 C -0.288 4.288 17 C 0.577 3.423 18 O -0.559 6.559 19 N -0.550 5.550 20 C 0.087 3.913 21 C -0.076 4.076 22 C -0.137 4.137 23 C -0.078 4.078 24 C -0.138 4.138 25 C -0.105 4.105 26 C -0.165 4.165 27 C 0.111 3.889 28 H 0.272 0.728 29 H 0.000 1.000 30 H -0.010 1.010 31 H 0.400 0.600 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.171 0.829 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.138 0.862 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.294 -23.806 -6.334 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.801 3.199 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.605 4.605 8 H 0.076 0.924 9 C 0.163 3.837 10 N -0.330 5.330 11 C 0.184 3.816 12 N -0.299 5.299 13 C 0.005 3.995 14 C -0.255 4.255 15 C -0.017 4.017 16 C -0.300 4.300 17 C 0.369 3.631 18 O -0.437 6.437 19 N -0.272 5.272 20 C -0.033 4.033 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.096 4.096 24 C -0.157 4.157 25 C -0.123 4.123 26 C -0.186 4.186 27 C 0.016 3.984 28 H 0.081 0.919 29 H 0.018 0.982 30 H 0.008 0.992 31 H 0.237 0.763 32 H 0.203 0.797 33 H 0.202 0.798 34 H 0.188 0.812 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.142 0.858 38 H 0.128 0.872 39 H 0.180 0.820 40 H 0.175 0.825 41 H 0.155 0.845 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.505 -22.299 -5.939 26.247 hybrid contribution 0.680 1.120 0.611 1.446 sum 13.184 -21.179 -5.328 25.510 Atomic orbital electron populations 1.70091 1.07676 1.28572 1.49430 1.25895 0.95886 1.03227 0.93576 0.85216 0.78458 0.77748 0.78447 1.19296 1.19280 1.19628 1.21565 0.93403 0.91747 1.53775 0.92396 1.18477 0.87852 0.82925 0.94456 1.45236 1.09760 1.02973 1.74987 1.18652 0.89103 0.85449 0.88396 1.67448 1.12616 1.27313 1.22554 1.23402 1.02115 0.85956 0.87979 1.22105 0.92704 1.01636 1.09007 1.21820 0.97084 0.93419 0.89366 1.19822 0.91297 0.95745 1.23094 1.18243 0.86196 0.79471 0.79178 1.90764 1.80136 1.35786 1.37048 1.45911 1.05020 1.36256 1.40063 1.22682 0.99506 0.88969 0.92116 1.21233 0.88436 1.00322 1.01259 1.20468 0.95412 0.98979 0.99172 1.20813 0.90884 0.98615 0.99293 1.21427 1.01431 0.96030 0.96767 1.21164 0.92664 0.99671 0.98798 1.21015 0.95158 1.00221 1.02183 1.18760 0.83311 0.97839 0.98470 0.91936 0.98179 0.99169 0.76333 0.79656 0.79790 0.81176 0.86967 0.89643 0.85823 0.87175 0.82022 0.82513 0.84462 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.09 13.29 21.45 0.28 -56.80 16 2 C 0.01 0.87 5.46 84.66 0.46 1.34 16 3 Si 0.98 46.05 29.54 68.60 2.03 48.07 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.57 -34.84 9.28 25.60 0.24 -34.60 16 8 H 0.06 3.51 7.60 -2.91 -0.02 3.49 16 9 C 0.29 17.07 5.44 85.63 0.47 17.54 16 10 N -0.70 -36.54 5.50 -348.17 -1.92 -38.46 16 11 C 0.42 18.67 7.47 133.65 1.00 19.67 16 12 N -0.58 -24.24 9.55 -192.50 -1.84 -26.08 16 13 C 0.17 4.68 11.16 84.73 0.95 5.62 16 14 C -0.23 -4.70 10.09 22.33 0.23 -4.48 16 15 C 0.01 0.20 8.62 22.72 0.20 0.40 16 16 C -0.29 -10.10 5.39 -19.88 -0.11 -10.21 16 17 C 0.58 21.46 6.76 86.65 0.59 22.05 16 18 O -0.56 -25.62 13.78 -4.06 -0.06 -25.67 16 19 N -0.55 -15.94 3.13 -633.17 -1.98 -17.92 16 20 C 0.09 1.50 5.90 86.62 0.51 2.01 16 21 C -0.08 -0.93 6.94 30.26 0.21 -0.72 16 22 C -0.14 -2.76 6.23 -19.63 -0.12 -2.88 16 23 C -0.08 -1.25 10.03 22.25 0.22 -1.02 16 24 C -0.14 -2.42 10.06 22.28 0.22 -2.20 16 25 C -0.10 -2.50 10.02 22.19 0.22 -2.28 16 26 C -0.16 -5.25 9.46 22.52 0.21 -5.04 16 27 C 0.11 3.22 6.62 38.30 0.25 3.47 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.40 21.05 6.25 -92.70 -0.58 20.47 16 32 H 0.19 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.17 2.48 6.09 -2.91 -0.02 2.46 16 35 H 0.11 1.24 5.99 -2.39 -0.01 1.22 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.12 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 42 H 0.10 3.96 6.29 -2.91 -0.02 3.94 16 Total: -1.00 -85.19 352.56 2.75 -82.44 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.48 Total: 25.74 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.74 Total: 8.68 kcal Atomic # 7 Polarization: -133.81 SS G_CDS: -5.45 Total: -139.26 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -85.19 2.75 -82.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362667622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.804 kcal (2) G-P(sol) polarization free energy of solvation -85.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds