Wall clock time and date at job start Tue Mar 31 2020 13:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39626 * 120.15349 * 341.52970 * 3 2 1 5 5 C 1.37946 * 119.84692 * 180.02562 * 4 3 2 6 6 C 1.38364 * 120.15171 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.84544 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00148 * 7 6 5 9 9 C 1.50697 * 109.47061 * 295.00032 * 8 7 6 10 10 N 1.27942 * 120.00054 * 334.99789 * 9 8 7 11 11 Si 1.86804 * 120.00146 * 154.99987 * 9 8 7 12 12 H 1.48498 * 109.47244 * 89.99463 * 11 9 8 13 13 H 1.48493 * 109.47357 * 209.99656 * 11 9 8 14 14 H 1.48502 * 109.46977 * 329.99994 * 11 9 8 15 15 C 1.50697 * 109.47085 * 174.99458 * 8 7 6 16 16 O 1.21277 * 120.00199 * 0.02562 * 15 8 7 17 17 N 1.34782 * 119.99853 * 180.02562 * 15 8 7 18 18 C 1.46496 * 119.99684 * 180.02562 * 17 15 8 19 19 C 1.53009 * 109.46790 * 179.97438 * 18 17 15 20 20 C 1.47201 * 112.84884 * 48.80177 * 19 18 17 21 21 N 9.65641 * 142.28953 * 270.61119 * 3 1 2 22 22 C 1.53774 * 113.61330 * 277.49443 * 19 18 17 23 23 C 1.53787 * 87.08267 * 220.01985 * 22 19 18 24 24 C 1.53784 * 87.07869 * 25.43438 * 23 22 19 25 25 C 1.38360 * 120.30548 * 0.23291 * 6 5 4 26 26 C 1.37950 * 120.14981 * 359.48868 * 25 6 5 27 27 H 1.08006 * 120.07791 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.92602 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.46646 * 209.99561 * 7 6 5 30 30 H 1.09000 * 109.47248 * 330.00279 * 7 6 5 31 31 H 1.09009 * 109.46910 * 54.99544 * 8 7 6 32 32 H 0.97000 * 120.00145 * 359.97438 * 10 9 8 33 33 H 0.97002 * 119.99904 * 359.97438 * 17 15 8 34 34 H 1.08998 * 109.47168 * 299.99423 * 18 17 15 35 35 H 1.08993 * 109.47446 * 60.00055 * 18 17 15 36 36 H 1.08998 * 113.61613 * 334.56898 * 22 19 18 37 37 H 1.09001 * 113.61265 * 105.47187 * 22 19 18 38 38 H 1.08997 * 113.61191 * 270.88847 * 23 22 19 39 39 H 1.08998 * 113.69200 * 139.99197 * 23 22 19 40 40 H 1.08994 * 113.61527 * 220.01915 * 24 23 22 41 41 H 1.08994 * 113.61439 * 89.11388 * 24 23 22 42 42 H 1.07991 * 119.92539 * 179.72462 * 25 6 5 43 43 H 1.08003 * 120.07847 * 180.25573 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -1.1442 0.3825 5 6 4.6493 -1.1364 0.3807 6 6 5.3374 0.0026 0.0015 7 6 6.8444 0.0036 0.0026 8 6 7.3557 -0.4524 -1.3655 9 6 6.9582 -1.8873 -1.5975 10 7 6.7400 -2.6598 -0.6012 11 14 6.7841 -2.5383 -3.3398 12 1 8.0870 -3.0852 -3.7964 13 1 5.7595 -3.6128 -3.3667 14 1 6.3676 -1.4343 -4.2414 15 6 8.8575 -0.3343 -1.4053 16 8 9.4597 0.0739 -0.4349 17 7 9.5315 -0.6823 -2.5194 18 6 10.9915 -0.5681 -2.5579 19 6 11.5028 -1.0240 -3.9260 20 6 10.7710 -0.4071 -5.0443 21 7 10.2073 -0.0605 5.9062 22 6 11.6511 -2.5494 -4.0512 23 6 12.9529 -2.2806 -4.8244 24 6 13.0317 -0.9425 -4.0707 25 6 4.6482 1.1422 -0.3736 26 6 3.2687 1.1465 -0.3819 27 1 2.7340 -2.0338 0.6791 28 1 5.1935 -2.0213 0.6759 29 1 7.2068 1.0108 0.2086 30 1 7.2077 -0.6778 0.7718 31 1 6.9211 0.1754 -2.1435 32 1 6.8307 -2.3219 0.3035 33 1 9.0500 -1.0092 -3.2954 34 1 11.2793 0.4697 -2.3894 35 1 11.4258 -1.1964 -1.7803 36 1 11.8061 -3.0528 -3.0969 37 1 10.8727 -3.0156 -4.6553 38 1 12.8074 -2.1686 -5.8988 39 1 13.7601 -2.9697 -4.5762 40 1 13.3679 -0.1113 -4.6905 41 1 13.5641 -1.0065 -3.1218 42 1 5.1914 2.0291 -0.6642 43 1 2.7320 2.0354 -0.6788 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416348096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:02 Heat of formation + Delta-G solvation = 434.585791 kcal Electronic energy + Delta-G solvation = -25686.302777 eV Core-core repulsion = 22020.573418 eV Total energy + Delta-G solvation = -3665.729359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -42.20287 -41.33638 -40.44770 -38.19549 -37.23049 -36.27902 -33.87044 -32.20494 -31.80605 -30.56878 -27.75240 -27.43943 -26.40389 -23.97266 -23.58438 -23.45396 -22.60057 -21.33864 -20.94819 -19.97273 -19.17511 -18.55915 -17.84799 -17.73251 -16.70888 -16.68421 -16.47748 -16.26676 -16.08532 -15.76503 -15.52546 -15.42696 -15.12548 -14.86750 -14.53878 -14.45972 -14.20929 -14.01650 -13.91947 -13.64943 -13.40119 -13.35328 -13.12271 -12.89186 -12.57779 -12.47422 -12.42552 -12.10112 -12.03449 -12.01953 -12.00585 -11.55997 -11.13995 -10.76859 -10.30637 -10.05646 -9.82912 -6.95127 -6.95071 -2.50741 -2.47452 -0.35791 0.30173 0.72326 1.13160 1.20988 1.36537 1.48142 1.52654 1.56756 1.78700 1.82188 2.13084 2.23509 2.31821 2.55347 2.73625 2.77918 2.81113 3.28069 3.29736 3.40179 3.59843 3.73539 3.82852 3.84488 3.87828 3.96630 4.06986 4.12836 4.26723 4.28038 4.31725 4.37585 4.48870 4.54657 4.58763 4.66870 4.71079 4.79558 4.94077 4.94267 4.98591 5.02044 5.14974 5.26345 5.44320 5.76050 5.85087 6.35284 6.68666 6.80132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.276 3.724 3 C -0.044 4.044 4 C -0.068 4.068 5 C -0.134 4.134 6 C -0.056 4.056 7 C -0.082 4.082 8 C -0.130 4.130 9 C -0.049 4.049 10 N -0.645 5.645 11 Si 1.043 2.957 12 H -0.194 1.194 13 H -0.285 1.285 14 H -0.168 1.168 15 C 0.538 3.462 16 O -0.557 6.557 17 N -0.737 5.737 18 C 0.150 3.850 19 C -0.421 4.421 20 C 0.957 3.043 21 N -1.000 6.000 22 C -0.086 4.086 23 C -0.163 4.163 24 C -0.072 4.072 25 C -0.103 4.103 26 C -0.058 4.058 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.181 0.819 32 H 0.322 0.678 33 H 0.412 0.588 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.084 0.916 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.169 0.831 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 -1.483 -59.179 60.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.039 4.039 3 C -0.047 4.047 4 C -0.089 4.089 5 C -0.152 4.152 6 C -0.057 4.057 7 C -0.120 4.120 8 C -0.154 4.154 9 C -0.290 4.290 10 N -0.260 5.260 11 Si 0.848 3.152 12 H -0.116 1.116 13 H -0.211 1.211 14 H -0.088 1.088 15 C 0.324 3.676 16 O -0.432 6.432 17 N -0.395 5.395 18 C 0.027 3.973 19 C -0.422 4.422 20 C 0.956 3.044 21 N -1.000 6.000 22 C -0.123 4.123 23 C -0.200 4.200 24 C -0.109 4.109 25 C -0.121 4.121 26 C -0.078 4.078 27 H 0.152 0.848 28 H 0.147 0.853 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.198 0.802 32 H 0.144 0.856 33 H 0.251 0.749 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.103 0.897 40 H 0.154 0.846 41 H 0.128 0.872 42 H 0.186 0.814 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.316 -2.518 -59.019 59.656 hybrid contribution 0.785 -0.025 3.677 3.760 sum 9.101 -2.543 -55.342 56.143 Atomic orbital electron populations 1.81324 1.13660 1.08915 1.10496 1.26060 0.92972 0.92458 0.92368 1.16125 0.83077 0.97355 1.08142 1.21237 0.94279 0.97133 0.96203 1.21335 0.93882 0.99027 1.00939 1.20082 0.95114 0.93929 0.96607 1.20494 0.90756 1.04260 0.96478 1.21862 0.91618 1.00655 1.01237 1.32962 0.92792 0.91621 1.11645 1.69429 1.10738 1.40546 1.05274 0.84434 0.83535 0.81770 0.65413 1.11602 1.21066 1.08763 1.20431 0.89619 0.75579 0.82003 1.90959 1.70631 1.45428 1.36228 1.46028 1.06965 1.69438 1.17091 1.21438 0.79751 1.05219 0.90894 1.26593 1.06787 1.07017 1.01767 1.86183 0.31870 0.25566 0.60736 2.00000 1.29470 1.57051 1.13479 1.23416 1.01181 0.82292 1.05403 1.23557 0.98091 0.96644 1.01685 1.23254 0.80422 1.01831 1.05385 1.21261 0.93118 0.98363 0.99324 1.21467 0.94620 0.96398 0.95307 0.84773 0.85295 0.88542 0.93027 0.80232 0.85645 0.74873 0.87053 0.89587 0.87508 0.84553 0.84519 0.89714 0.84589 0.87150 0.81386 0.82649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.52 18.54 19.00 0.35 -5.16 16 2 C 0.28 1.51 15.33 88.33 1.35 2.86 16 3 C -0.04 0.02 5.73 -21.36 -0.12 -0.10 16 4 C -0.07 0.01 9.76 22.54 0.22 0.23 16 5 C -0.13 0.11 8.47 22.23 0.19 0.30 16 6 C -0.06 0.25 4.85 -19.80 -0.10 0.16 16 7 C -0.08 0.35 3.91 29.85 0.12 0.47 16 8 C -0.13 1.99 2.19 -12.29 -0.03 1.97 16 9 C -0.05 0.67 4.12 88.67 0.37 1.03 16 10 N -0.65 2.45 11.42 24.11 0.28 2.73 16 11 Si 1.04 -24.61 27.49 68.60 1.89 -22.72 16 12 H -0.19 6.43 7.11 99.48 0.71 7.14 16 13 H -0.29 3.59 7.11 99.48 0.71 4.30 16 14 H -0.17 5.51 7.11 99.48 0.71 6.21 16 15 C 0.54 -7.85 7.14 87.66 0.63 -7.22 16 16 O -0.56 -0.38 15.92 -3.02 -0.05 -0.43 16 17 N -0.74 21.94 5.13 -463.06 -2.38 19.57 16 18 C 0.15 -4.93 5.13 86.38 0.44 -4.48 16 19 C -0.42 19.39 1.03 -53.46 -0.05 19.33 16 20 C 0.96 -56.87 22.83 70.18 1.60 -55.27 16 21 N -1.00 -71.62 30.19 37.02 1.12 -70.50 16 22 C -0.09 3.63 7.20 31.12 0.22 3.86 16 23 C -0.16 6.81 7.79 31.12 0.24 7.05 16 24 C -0.07 3.06 7.21 31.12 0.22 3.29 16 25 C -0.10 0.85 9.68 22.23 0.22 1.06 16 26 C -0.06 0.33 9.76 22.54 0.22 0.55 16 27 H 0.13 -0.10 8.06 -2.91 -0.02 -0.13 16 28 H 0.13 0.10 5.20 -2.91 -0.02 0.08 16 29 H 0.10 -0.27 7.89 -2.39 -0.02 -0.29 16 30 H 0.05 0.20 6.43 -2.39 -0.02 0.18 16 31 H 0.18 -4.73 7.85 -2.38 -0.02 -4.75 16 32 H 0.32 0.24 4.84 -92.71 -0.45 -0.20 16 33 H 0.41 -16.40 5.10 -92.71 -0.47 -16.87 16 34 H 0.11 -3.55 8.14 -2.39 -0.02 -3.57 16 35 H 0.09 -2.09 7.94 -2.39 -0.02 -2.11 16 36 H 0.11 -3.67 7.96 -2.39 -0.02 -3.69 16 37 H 0.14 -6.48 8.09 -2.39 -0.02 -6.50 16 38 H 0.14 -6.52 8.13 -2.39 -0.02 -6.53 16 39 H 0.08 -2.92 8.14 -2.39 -0.02 -2.94 16 40 H 0.14 -6.44 8.08 -2.39 -0.02 -6.46 16 41 H 0.11 -3.93 8.10 -2.39 -0.02 -3.95 16 42 H 0.17 -2.45 8.06 -2.92 -0.02 -2.47 16 43 H 0.16 -1.50 8.06 -2.91 -0.02 -1.52 16 Total: 0.00 -153.37 388.19 7.86 -145.51 By element: Atomic # 1 Polarization: -44.98 SS G_CDS: 0.91 Total: -44.08 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 5.74 Total: -24.92 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.63 Total: -53.37 kcal Atomic # 8 Polarization: -0.38 SS G_CDS: -0.05 Total: -0.43 kcal Atomic # 14 Polarization: -24.61 SS G_CDS: 1.89 Total: -22.72 kcal Total: -153.37 7.86 -145.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416348096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 580.101 kcal (2) G-P(sol) polarization free energy of solvation -153.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 426.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -145.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 434.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds