Wall clock time and date at job start Tue Mar 31 2020 14:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86805 * 119.99925 * 2 1 4 4 H 1.48494 * 109.47036 * 275.41574 * 3 2 1 5 5 H 1.48505 * 109.46720 * 35.41453 * 3 2 1 6 6 H 1.48499 * 109.46904 * 155.41283 * 3 2 1 7 7 C 1.39863 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 341.73278 * 7 2 1 9 9 C 1.41134 * 120.00135 * 161.72291 * 7 2 1 10 10 C 1.40907 * 120.15077 * 330.11636 * 9 7 2 11 11 C 1.36338 * 119.85355 * 179.73801 * 10 9 7 12 12 C 1.39546 * 120.17351 * 0.53988 * 11 10 9 13 13 N 1.38898 * 119.84998 * 179.75973 * 12 11 10 14 14 C 1.46502 * 119.99714 * 359.72027 * 13 12 11 15 15 C 1.53002 * 109.46884 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.47216 * 180.02562 * 15 14 13 17 17 C 1.52992 * 109.47287 * 180.02562 * 16 15 14 18 18 C 1.53174 * 109.54514 * 294.54973 * 17 16 15 19 19 C 1.53087 * 109.16874 * 183.15128 * 18 17 16 20 20 O 1.42908 * 109.41190 * 57.61238 * 19 18 17 21 21 C 1.42902 * 114.09579 * 298.84327 * 20 19 18 22 22 C 1.53083 * 109.41846 * 61.15893 * 21 20 19 23 23 C 1.39667 * 120.30389 * 359.47888 * 12 11 10 24 24 Cl 1.73601 * 119.93210 * 180.26092 * 23 12 11 25 25 C 1.36436 * 120.14067 * 0.23542 * 23 12 11 26 26 H 0.96991 * 120.00228 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.06644 * 0.02562 * 10 9 7 28 28 H 1.08007 * 119.91614 * 180.29294 * 11 10 9 29 29 H 0.96998 * 120.00130 * 179.71941 * 13 12 11 30 30 H 1.09001 * 109.47137 * 60.00103 * 14 13 12 31 31 H 1.08999 * 109.47410 * 299.99600 * 14 13 12 32 32 H 1.09005 * 109.47046 * 299.99928 * 15 14 13 33 33 H 1.09001 * 109.47289 * 60.00025 * 15 14 13 34 34 H 1.09005 * 109.46807 * 299.99772 * 16 15 14 35 35 H 1.08993 * 109.47489 * 59.99519 * 16 15 14 36 36 H 1.08999 * 109.54912 * 54.81794 * 17 16 15 37 37 H 1.09004 * 109.52264 * 303.06542 * 18 17 16 38 38 H 1.09006 * 109.52079 * 63.24529 * 18 17 16 39 39 H 1.09001 * 109.48530 * 297.63187 * 19 18 17 40 40 H 1.09000 * 109.48054 * 177.59019 * 19 18 17 41 41 H 1.09003 * 109.48292 * 301.17374 * 21 20 19 42 42 H 1.09000 * 109.48976 * 181.15111 * 21 20 19 43 43 H 1.08997 * 109.52803 * 182.48967 * 22 21 20 44 44 H 1.08998 * 109.52307 * 62.29458 * 22 21 20 45 45 H 1.07998 * 120.08386 * 180.02562 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3761 2.1125 -1.3938 5 1 1.5023 2.6169 0.8114 6 1 3.5931 1.4099 0.5825 7 6 2.0085 -1.2112 0.0005 8 1 1.5093 -2.1228 0.2941 9 6 3.3664 -1.2421 -0.3828 10 6 3.8594 -0.3101 -1.3175 11 6 5.1734 -0.3421 -1.6794 12 6 6.0277 -1.3019 -1.1352 13 7 7.3641 -1.3315 -1.5124 14 6 7.8725 -0.3603 -2.4843 15 6 9.3630 -0.6102 -2.7230 16 6 9.8942 0.4045 -3.7375 17 6 11.3844 0.1542 -3.9767 18 6 12.1648 0.4377 -2.6894 19 6 13.6612 0.2610 -2.9596 20 8 14.0590 1.1339 -4.0188 21 6 13.3967 0.8845 -5.2602 22 6 11.8896 1.0862 -5.0825 23 6 5.5464 -2.2294 -0.2084 24 17 6.6191 -3.4151 0.4676 25 6 4.2349 -2.2052 0.1671 26 1 -0.4850 0.8399 -0.0004 27 1 3.1987 0.4309 -1.7427 28 1 5.5534 0.3749 -2.3923 29 1 7.9608 -1.9952 -1.1325 30 1 7.7303 0.6489 -2.0978 31 1 7.3312 -0.4692 -3.4241 32 1 9.9047 -0.5016 -1.7834 33 1 9.5049 -1.6194 -3.1097 34 1 9.3526 0.2963 -4.6772 35 1 9.7524 1.4135 -3.3505 36 1 11.5367 -0.8827 -4.2760 37 1 11.9715 1.4598 -2.3639 38 1 11.8503 -0.2587 -1.9120 39 1 13.8595 -0.7719 -3.2459 40 1 14.2244 0.5030 -2.0582 41 1 13.5914 -0.1402 -5.5767 42 1 13.7692 1.5754 -6.0165 43 1 11.3783 0.8536 -6.0166 44 1 11.6908 2.1214 -4.8054 45 1 3.8638 -2.9225 0.8841 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453132029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:42 Heat of formation + Delta-G solvation = -61.739340 kcal Electronic energy + Delta-G solvation = -24149.287098 eV Core-core repulsion = 20576.798699 eV Total energy + Delta-G solvation = -3572.488399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.82523 -38.54233 -36.60889 -35.68046 -35.00992 -33.26680 -31.74122 -31.35746 -29.80457 -29.18519 -26.81793 -24.41399 -23.93003 -23.12889 -22.02810 -21.01078 -20.38987 -20.10173 -17.55562 -16.75983 -16.51921 -16.36021 -15.77830 -15.30383 -15.06897 -15.03952 -14.59207 -14.32643 -14.16924 -13.54313 -13.21713 -13.09388 -12.82006 -12.68067 -12.60267 -12.54866 -12.20992 -12.01131 -11.67817 -11.56386 -11.43483 -11.13759 -11.00893 -10.93876 -10.75393 -10.58497 -10.55505 -10.44957 -10.28989 -9.95413 -9.81079 -9.64049 -9.35537 -8.81277 -7.81500 -6.88552 -6.72891 -4.30434 2.41237 2.59775 3.02109 3.10832 3.22214 3.32737 3.53374 3.98763 4.00232 4.34811 4.41332 4.44910 4.48685 4.65393 4.83280 4.92732 4.98580 5.08829 5.10674 5.24977 5.33267 5.34094 5.37272 5.47440 5.54359 5.63470 5.64615 5.72529 5.77266 5.79865 5.87529 6.01023 6.14025 6.17765 6.21657 6.48920 6.62634 6.84154 6.85670 7.00493 7.25168 7.29125 7.72592 7.82806 8.10507 8.36175 8.42610 8.64565 8.83198 10.15010 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.002480 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.488225 B =11288.441058 C =12440.711765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.083 3.917 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.245 1.245 7 C -0.449 4.449 8 H 0.090 0.910 9 C 0.068 3.932 10 C -0.193 4.193 11 C -0.134 4.134 12 C 0.102 3.898 13 N -0.758 5.758 14 C 0.135 3.865 15 C -0.130 4.130 16 C -0.109 4.109 17 C -0.089 4.089 18 C -0.153 4.153 19 C 0.060 3.940 20 O -0.386 6.386 21 C 0.060 3.940 22 C -0.152 4.152 23 C -0.050 4.050 24 Cl -0.118 7.118 25 C -0.164 4.164 26 H 0.283 0.717 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.390 0.610 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.973 1.943 -7.945 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.478 4.478 8 H 0.108 0.892 9 C 0.064 3.936 10 C -0.213 4.213 11 C -0.156 4.156 12 C 0.003 3.997 13 N -0.395 5.395 14 C 0.010 3.990 15 C -0.167 4.167 16 C -0.147 4.147 17 C -0.107 4.107 18 C -0.191 4.191 19 C -0.017 4.017 20 O -0.304 6.304 21 C -0.017 4.017 22 C -0.190 4.190 23 C -0.080 4.080 24 Cl -0.090 7.090 25 C -0.185 4.185 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.225 0.775 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 21.916 2.226 -7.966 23.425 hybrid contribution 0.192 0.193 0.142 0.307 sum 22.107 2.419 -7.824 23.576 Atomic orbital electron populations 1.69723 1.07940 1.29958 1.36426 1.26072 0.94686 1.01394 0.91246 0.86394 0.81391 0.80230 0.78689 1.19793 1.21861 1.16810 1.19251 0.92889 0.96119 1.39551 0.89247 1.17510 0.93206 0.91556 0.91359 1.20753 0.95014 1.03579 1.01938 1.19914 0.93716 0.99125 1.02834 1.16954 0.84861 0.98136 0.99710 1.43952 1.07407 1.38111 1.49989 1.21070 0.92788 0.92741 0.92377 1.21788 0.95580 0.99645 0.99731 1.21526 0.94320 0.99505 0.99391 1.21207 0.95090 0.99525 0.94927 1.22309 0.95436 1.03168 0.98170 1.22603 0.94902 0.93581 0.90631 1.87930 1.64677 1.58296 1.19534 1.22577 0.91948 1.00801 0.86345 1.22259 0.96404 1.00897 0.99415 1.19969 0.91363 0.94644 1.01992 1.98247 1.66887 1.58663 1.85179 1.20556 0.90332 1.04035 1.03535 0.90652 0.87633 0.87870 0.77534 0.93358 0.93310 0.91427 0.91645 0.91532 0.91560 0.91056 0.90914 0.90479 0.93295 0.88954 0.93311 0.89005 0.90798 0.90921 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.77 13.93 55.54 0.77 -21.00 16 2 C 0.08 2.18 5.40 -17.34 -0.09 2.09 16 3 Si 0.91 20.58 24.51 -169.99 -4.17 16.41 16 4 H -0.27 -5.94 6.70 56.52 0.38 -5.56 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.24 -5.70 6.87 56.52 0.39 -5.31 16 7 C -0.45 -12.02 9.55 -37.88 -0.36 -12.38 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.07 1.69 5.10 -106.80 -0.54 1.14 16 10 C -0.19 -4.52 7.11 -39.26 -0.28 -4.80 16 11 C -0.13 -2.80 9.23 -39.78 -0.37 -3.16 16 12 C 0.10 2.06 6.67 -83.64 -0.56 1.50 16 13 N -0.76 -12.31 5.66 -58.46 -0.33 -12.64 16 14 C 0.14 1.78 4.89 -4.04 -0.02 1.76 16 15 C -0.13 -1.27 5.09 -26.73 -0.14 -1.40 16 16 C -0.11 -0.91 4.69 -26.74 -0.13 -1.03 16 17 C -0.09 -0.66 2.27 -90.44 -0.21 -0.87 16 18 C -0.15 -1.16 5.10 -26.60 -0.14 -1.30 16 19 C 0.06 0.45 6.84 37.20 0.25 0.71 16 20 O -0.39 -3.62 10.77 -35.23 -0.38 -4.00 16 21 C 0.06 0.43 6.84 37.20 0.25 0.69 16 22 C -0.15 -1.06 5.42 -26.59 -0.14 -1.21 16 23 C -0.05 -1.04 6.30 -39.70 -0.25 -1.29 16 24 Cl -0.12 -2.08 27.55 -51.86 -1.43 -3.51 16 25 C -0.16 -3.78 9.50 -39.24 -0.37 -4.16 16 26 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 27 H 0.11 2.47 4.73 -52.49 -0.25 2.22 16 28 H 0.10 1.90 6.68 -52.48 -0.35 1.55 16 29 H 0.39 5.94 7.11 -40.82 -0.29 5.65 16 30 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 31 H 0.05 0.66 7.94 -51.93 -0.41 0.24 16 32 H 0.07 0.65 6.66 -51.93 -0.35 0.31 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.56 6.75 -51.93 -0.35 0.21 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -27.50 364.88 -10.19 -37.69 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.08 Total: 5.27 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -3.08 Total: -23.72 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.44 Total: -33.64 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.38 Total: -4.00 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.17 Total: 16.41 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.43 Total: -3.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.50 -10.19 -37.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453132029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.047 kcal (2) G-P(sol) polarization free energy of solvation -27.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds