Wall clock time and date at job start Tue Mar 31 2020 14:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86805 * 119.99925 * 2 1 4 4 H 1.48494 * 109.47036 * 275.41574 * 3 2 1 5 5 H 1.48505 * 109.46720 * 35.41453 * 3 2 1 6 6 H 1.48499 * 109.46904 * 155.41283 * 3 2 1 7 7 C 1.39863 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 341.73278 * 7 2 1 9 9 C 1.41134 * 120.00135 * 161.72291 * 7 2 1 10 10 C 1.40907 * 120.15077 * 330.11636 * 9 7 2 11 11 C 1.36338 * 119.85355 * 179.73801 * 10 9 7 12 12 C 1.39546 * 120.17351 * 0.53988 * 11 10 9 13 13 N 1.38898 * 119.84998 * 179.75973 * 12 11 10 14 14 C 1.46502 * 119.99714 * 359.72027 * 13 12 11 15 15 C 1.53002 * 109.46884 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.47216 * 180.02562 * 15 14 13 17 17 C 1.52992 * 109.47287 * 180.02562 * 16 15 14 18 18 C 1.53174 * 109.54514 * 294.54973 * 17 16 15 19 19 C 1.53087 * 109.16874 * 183.15128 * 18 17 16 20 20 O 1.42908 * 109.41190 * 57.61238 * 19 18 17 21 21 C 1.42902 * 114.09579 * 298.84327 * 20 19 18 22 22 C 1.53083 * 109.41846 * 61.15893 * 21 20 19 23 23 C 1.39667 * 120.30389 * 359.47888 * 12 11 10 24 24 Cl 1.73601 * 119.93210 * 180.26092 * 23 12 11 25 25 C 1.36436 * 120.14067 * 0.23542 * 23 12 11 26 26 H 0.96991 * 120.00228 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.06644 * 0.02562 * 10 9 7 28 28 H 1.08007 * 119.91614 * 180.29294 * 11 10 9 29 29 H 0.96998 * 120.00130 * 179.71941 * 13 12 11 30 30 H 1.09001 * 109.47137 * 60.00103 * 14 13 12 31 31 H 1.08999 * 109.47410 * 299.99600 * 14 13 12 32 32 H 1.09005 * 109.47046 * 299.99928 * 15 14 13 33 33 H 1.09001 * 109.47289 * 60.00025 * 15 14 13 34 34 H 1.09005 * 109.46807 * 299.99772 * 16 15 14 35 35 H 1.08993 * 109.47489 * 59.99519 * 16 15 14 36 36 H 1.08999 * 109.54912 * 54.81794 * 17 16 15 37 37 H 1.09004 * 109.52264 * 303.06542 * 18 17 16 38 38 H 1.09006 * 109.52079 * 63.24529 * 18 17 16 39 39 H 1.09001 * 109.48530 * 297.63187 * 19 18 17 40 40 H 1.09000 * 109.48054 * 177.59019 * 19 18 17 41 41 H 1.09003 * 109.48292 * 301.17374 * 21 20 19 42 42 H 1.09000 * 109.48976 * 181.15111 * 21 20 19 43 43 H 1.08997 * 109.52803 * 182.48967 * 22 21 20 44 44 H 1.08998 * 109.52307 * 62.29458 * 22 21 20 45 45 H 1.07998 * 120.08386 * 180.02562 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3761 2.1125 -1.3938 5 1 1.5023 2.6169 0.8114 6 1 3.5931 1.4099 0.5825 7 6 2.0085 -1.2112 0.0005 8 1 1.5093 -2.1228 0.2941 9 6 3.3664 -1.2421 -0.3828 10 6 3.8594 -0.3101 -1.3175 11 6 5.1734 -0.3421 -1.6794 12 6 6.0277 -1.3019 -1.1352 13 7 7.3641 -1.3315 -1.5124 14 6 7.8725 -0.3603 -2.4843 15 6 9.3630 -0.6102 -2.7230 16 6 9.8942 0.4045 -3.7375 17 6 11.3844 0.1542 -3.9767 18 6 12.1648 0.4377 -2.6894 19 6 13.6612 0.2610 -2.9596 20 8 14.0590 1.1339 -4.0188 21 6 13.3967 0.8845 -5.2602 22 6 11.8896 1.0862 -5.0825 23 6 5.5464 -2.2294 -0.2084 24 17 6.6191 -3.4151 0.4676 25 6 4.2349 -2.2052 0.1671 26 1 -0.4850 0.8399 -0.0004 27 1 3.1987 0.4309 -1.7427 28 1 5.5534 0.3749 -2.3923 29 1 7.9608 -1.9952 -1.1325 30 1 7.7303 0.6489 -2.0978 31 1 7.3312 -0.4692 -3.4241 32 1 9.9047 -0.5016 -1.7834 33 1 9.5049 -1.6194 -3.1097 34 1 9.3526 0.2963 -4.6772 35 1 9.7524 1.4135 -3.3505 36 1 11.5367 -0.8827 -4.2760 37 1 11.9715 1.4598 -2.3639 38 1 11.8503 -0.2587 -1.9120 39 1 13.8595 -0.7719 -3.2459 40 1 14.2244 0.5030 -2.0582 41 1 13.5914 -0.1402 -5.5767 42 1 13.7692 1.5754 -6.0165 43 1 11.3783 0.8536 -6.0166 44 1 11.6908 2.1214 -4.8054 45 1 3.8638 -2.9225 0.8841 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453132029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:41 Heat of formation + Delta-G solvation = -76.197924 kcal Electronic energy + Delta-G solvation = -24149.914069 eV Core-core repulsion = 20576.798699 eV Total energy + Delta-G solvation = -3573.115370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.45076 -40.15816 -37.65142 -37.26295 -36.17186 -34.96080 -32.81671 -31.97532 -31.54141 -30.67236 -27.88678 -25.81905 -24.66491 -24.23135 -23.37879 -22.17735 -21.68458 -20.88695 -19.43799 -18.31050 -17.18978 -16.96578 -16.86423 -16.69626 -16.48184 -16.04844 -15.65112 -15.41019 -15.05934 -14.88647 -14.54416 -14.53856 -14.35429 -14.27051 -13.68930 -13.50893 -13.27794 -13.00308 -12.76857 -12.70540 -12.45178 -12.36618 -12.28325 -12.22690 -11.97176 -11.82858 -11.65366 -11.63562 -11.42899 -11.19900 -11.12419 -11.06981 -10.50868 -10.40774 -9.53813 -8.80283 -8.37057 -6.23975 0.63993 0.82739 1.28836 1.38428 1.44438 1.52176 2.16312 2.60440 2.73343 3.00051 3.45972 3.70714 3.77361 3.89935 4.10676 4.11853 4.16968 4.22134 4.31131 4.42200 4.48597 4.52270 4.61781 4.74289 4.75459 4.77052 4.80674 4.83762 4.87014 4.94810 4.99968 5.06085 5.10832 5.15882 5.21042 5.25698 5.30633 5.40784 5.46091 5.52028 5.52979 5.86640 6.02466 6.29302 6.35206 6.54743 6.78104 6.88011 7.05272 8.29495 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.002480 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.488225 B =11288.441058 C =12440.711765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.044 3.956 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.484 4.484 8 H 0.052 0.948 9 C 0.041 3.959 10 C -0.193 4.193 11 C -0.142 4.142 12 C 0.130 3.870 13 N -0.749 5.749 14 C 0.128 3.872 15 C -0.119 4.119 16 C -0.104 4.104 17 C -0.086 4.086 18 C -0.151 4.151 19 C 0.056 3.944 20 O -0.409 6.409 21 C 0.055 3.945 22 C -0.149 4.149 23 C -0.067 4.067 24 Cl -0.086 7.086 25 C -0.168 4.168 26 H 0.290 0.710 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.397 0.603 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.326 2.632 -9.242 27.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.168 4.168 3 Si 0.784 3.216 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.515 4.515 8 H 0.070 0.930 9 C 0.037 3.963 10 C -0.213 4.213 11 C -0.165 4.165 12 C 0.028 3.972 13 N -0.384 5.384 14 C 0.004 3.996 15 C -0.157 4.157 16 C -0.142 4.142 17 C -0.105 4.105 18 C -0.189 4.189 19 C -0.021 4.021 20 O -0.328 6.328 21 C -0.021 4.021 22 C -0.187 4.187 23 C -0.097 4.097 24 Cl -0.058 7.058 25 C -0.189 4.189 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.152 0.848 29 H 0.233 0.767 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 25.317 2.904 -9.283 27.121 hybrid contribution -0.535 -0.183 0.495 0.752 sum 24.781 2.721 -8.787 26.433 Atomic orbital electron populations 1.69763 1.09077 1.31022 1.39021 1.26734 0.95296 1.03920 0.90847 0.85563 0.79627 0.76873 0.79518 1.17994 1.20834 1.17679 1.19202 0.94314 0.95457 1.42478 0.92955 1.17586 0.92767 0.93290 0.92670 1.20848 0.96176 1.02938 1.01326 1.20184 0.92834 1.00021 1.03437 1.17164 0.86375 0.96248 0.97442 1.44165 1.05868 1.38551 1.49807 1.21328 0.94915 0.91869 0.91481 1.21707 0.93154 1.00396 1.00445 1.21472 0.94809 0.98845 0.99074 1.21181 0.94433 0.99869 0.95007 1.22284 0.95520 1.02700 0.98373 1.22702 0.94984 0.93785 0.90591 1.87900 1.65365 1.59036 1.20505 1.22719 0.91959 1.01591 0.85856 1.22232 0.96395 1.00314 0.99757 1.20014 0.91313 0.95853 1.02549 1.98251 1.65411 1.57353 1.84744 1.20617 0.91342 1.03501 1.03419 0.89968 0.87736 0.84830 0.76692 0.93200 0.92938 0.91051 0.91106 0.91081 0.91791 0.90605 0.91835 0.90039 0.92517 0.88417 0.92515 0.88125 0.89680 0.91694 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.03 13.93 21.82 0.30 -47.73 16 2 C 0.04 2.41 5.40 85.22 0.46 2.87 16 3 Si 0.96 42.63 24.51 68.60 1.68 44.31 16 4 H -0.25 -10.49 6.70 99.48 0.67 -9.82 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.25 -11.42 6.87 99.48 0.68 -10.74 16 7 C -0.48 -27.32 9.55 23.37 0.22 -27.10 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 9 C 0.04 2.06 5.10 -21.27 -0.11 1.95 16 10 C -0.19 -8.86 7.11 22.48 0.16 -8.70 16 11 C -0.14 -5.57 9.23 22.14 0.20 -5.36 16 12 C 0.13 4.83 6.67 38.68 0.26 5.09 16 13 N -0.75 -21.49 5.66 -338.88 -1.92 -23.41 16 14 C 0.13 2.85 4.89 86.38 0.42 3.27 16 15 C -0.12 -1.87 5.09 30.59 0.16 -1.72 16 16 C -0.10 -1.37 4.69 30.59 0.14 -1.22 16 17 C -0.09 -1.03 2.27 -10.67 -0.02 -1.06 16 18 C -0.15 -1.92 5.10 30.68 0.16 -1.76 16 19 C 0.06 0.73 6.84 72.01 0.49 1.22 16 20 O -0.41 -6.97 10.77 -148.98 -1.60 -8.57 16 21 C 0.06 0.67 6.84 72.01 0.49 1.16 16 22 C -0.15 -1.71 5.42 30.68 0.17 -1.55 16 23 C -0.07 -2.68 6.30 22.19 0.14 -2.54 16 24 Cl -0.09 -2.83 27.55 -2.72 -0.07 -2.91 16 25 C -0.17 -7.81 9.50 22.49 0.21 -7.59 16 26 H 0.29 14.58 8.30 -92.71 -0.77 13.82 16 27 H 0.10 4.77 4.73 -2.91 -0.01 4.76 16 28 H 0.13 4.39 6.68 -2.91 -0.02 4.37 16 29 H 0.40 10.52 7.11 -92.71 -0.66 9.86 16 30 H 0.05 1.15 7.92 -2.39 -0.02 1.13 16 31 H 0.05 1.18 7.94 -2.39 -0.02 1.16 16 32 H 0.07 1.10 6.66 -2.38 -0.02 1.09 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.08 0.95 6.75 -2.38 -0.02 0.93 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -60.62 364.88 2.21 -58.41 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.27 Total: 22.93 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 3.56 Total: -43.04 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -1.61 Total: -71.14 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -1.60 Total: -8.57 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.68 Total: 44.31 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.07 Total: -2.91 kcal Total: -60.62 2.21 -58.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453132029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.784 kcal (2) G-P(sol) polarization free energy of solvation -60.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds