Wall clock time and date at job start Tue Mar 31 2020 13:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00242 * 2 1 4 4 H 1.48500 * 109.47008 * 270.00522 * 3 2 1 5 5 H 1.48508 * 109.46426 * 29.99978 * 3 2 1 6 6 H 1.48499 * 109.47206 * 149.99838 * 3 2 1 7 7 C 1.37880 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00199 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00376 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.46907 * 110.99729 * 183.15305 * 11 10 9 13 13 H 1.08998 * 109.46621 * 185.82619 * 12 11 10 14 14 C 1.52998 * 109.46805 * 65.83115 * 12 11 10 15 15 C 1.50699 * 109.47619 * 64.99792 * 14 12 11 16 16 C 1.38233 * 120.00703 * 265.02384 * 15 14 12 17 17 C 1.38218 * 120.01262 * 179.97438 * 16 15 14 18 18 C 1.38261 * 120.02747 * 359.97438 * 17 16 15 19 19 C 1.38189 * 120.01419 * 359.75682 * 18 17 16 20 20 C 1.38339 * 120.00539 * 84.99495 * 15 14 12 21 21 Cl 1.73602 * 120.01257 * 0.02562 * 20 15 14 22 22 C 1.53000 * 109.47141 * 305.82875 * 12 11 10 23 23 H 1.08993 * 109.82408 * 57.43188 * 22 12 11 24 24 C 1.54381 * 109.83104 * 296.54636 * 22 12 11 25 25 C 1.55453 * 102.18762 * 219.18566 * 24 22 12 26 26 C 1.54947 * 100.98859 * 34.03789 * 25 24 22 27 27 O 1.43238 * 109.82769 * 178.32216 * 22 12 11 28 28 H 0.96998 * 120.00194 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46996 * 59.99191 * 9 7 2 30 30 H 1.08993 * 109.47085 * 300.00234 * 9 7 2 31 31 H 1.09004 * 109.47408 * 59.99841 * 10 9 7 32 32 H 1.09001 * 109.47109 * 299.99935 * 10 9 7 33 33 H 1.00893 * 110.99735 * 59.20089 * 11 10 9 34 34 H 1.09000 * 109.47414 * 304.99476 * 14 12 11 35 35 H 1.09007 * 109.46605 * 184.99503 * 14 12 11 36 36 H 1.07995 * 119.99223 * 359.94590 * 16 15 14 37 37 H 1.08004 * 119.98255 * 179.97438 * 17 16 15 38 38 H 1.08002 * 119.99301 * 179.97438 * 18 17 16 39 39 H 1.08002 * 120.00739 * 180.25316 * 19 18 17 40 40 H 1.09008 * 110.84739 * 337.31956 * 24 22 12 41 41 H 1.08995 * 110.85063 * 100.93594 * 24 22 12 42 42 H 1.08997 * 111.05433 * 276.12795 * 25 24 22 43 43 H 1.08997 * 111.14973 * 151.99105 * 25 24 22 44 44 H 1.09002 * 110.30960 * 204.69277 * 26 25 24 45 45 H 1.08996 * 110.39395 * 82.56369 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4906 -2.6365 -0.0009 12 6 6.0170 -4.0059 -0.0763 13 1 7.1016 -3.9844 0.0294 14 6 5.6484 -4.6203 -1.4281 15 6 6.3447 -3.8643 -2.5302 16 6 5.6885 -2.8408 -3.1881 17 6 6.3273 -2.1470 -4.1985 18 6 7.6230 -2.4758 -4.5516 19 6 8.2820 -3.4950 -3.8910 20 6 7.6410 -4.1940 -2.8833 21 17 8.4657 -5.4792 -2.0576 22 6 5.4114 -4.8477 1.0487 23 1 4.3240 -4.8356 0.9751 24 6 5.8499 -4.2853 2.4179 25 6 6.0983 -5.5807 3.2405 26 6 6.6344 -6.5310 2.1403 27 8 5.8897 -6.1949 0.9589 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8745 -0.6801 -0.8910 31 1 3.6579 -3.1506 -0.8907 32 1 3.6586 -3.1501 0.8893 33 1 5.8521 -2.1541 0.8081 34 1 4.5696 -4.5609 -1.5722 35 1 5.9610 -5.6643 -1.4500 36 1 4.6764 -2.5836 -2.9127 37 1 5.8140 -1.3477 -4.7125 38 1 8.1214 -1.9335 -5.3416 39 1 9.2956 -3.7490 -4.1641 40 1 6.7675 -3.7045 2.3229 41 1 5.0555 -3.6871 2.8641 42 1 5.1689 -5.9581 3.6668 43 1 6.8461 -5.4166 4.0164 44 1 6.4555 -7.5698 2.4176 45 1 7.6987 -6.3614 1.9775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453195913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:33 Heat of formation + Delta-G solvation = -56.449597 kcal Electronic energy + Delta-G solvation = -25793.399118 eV Core-core repulsion = 22221.140100 eV Total energy + Delta-G solvation = -3572.259018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.10817 -40.06006 -37.86802 -37.27662 -35.29110 -33.78344 -32.99579 -32.05525 -31.50620 -29.91873 -28.34976 -26.31119 -24.30506 -23.56409 -22.81070 -22.66174 -22.00534 -20.55075 -18.88779 -18.04671 -17.86731 -17.22115 -16.89734 -16.30292 -16.21801 -16.11341 -15.71065 -15.11010 -15.04524 -14.69297 -14.60513 -14.49705 -14.22161 -14.04592 -13.77192 -13.39032 -13.11035 -13.00495 -12.69799 -12.64071 -12.48095 -12.33203 -12.21804 -12.08581 -11.96857 -11.84953 -11.73015 -11.64925 -11.55424 -11.39457 -11.29391 -10.75494 -10.68371 -9.70034 -9.49666 -9.15459 -8.27678 -6.31498 0.31819 0.46390 1.27927 1.38330 1.38982 1.51426 2.37713 2.78744 2.84737 3.08596 3.31919 3.56403 3.60383 3.90634 3.94662 3.96813 4.13350 4.21245 4.22426 4.33101 4.41441 4.43993 4.52807 4.56595 4.62467 4.69562 4.77871 4.81405 4.84174 4.89827 4.92823 4.98265 5.01462 5.11933 5.15621 5.24372 5.37028 5.39949 5.53112 5.57463 5.65594 5.68974 5.99391 6.01275 6.20782 6.28642 6.54619 6.77478 7.33407 8.89071 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009731 B = 0.004858 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.843415 B = 5762.414488 C = 8081.299635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.246 1.246 7 C -0.528 4.528 8 H 0.030 0.970 9 C 0.000 4.000 10 C 0.085 3.915 11 N -0.671 5.671 12 C 0.101 3.899 13 H 0.087 0.913 14 C -0.071 4.071 15 C -0.060 4.060 16 C -0.100 4.100 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.048 4.048 21 Cl -0.072 7.072 22 C 0.049 3.951 23 H 0.062 0.938 24 C -0.152 4.152 25 C -0.147 4.147 26 C 0.044 3.956 27 O -0.391 6.391 28 H 0.265 0.735 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.056 0.944 32 H 0.020 0.980 33 H 0.344 0.656 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.271 -9.679 -1.510 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.170 1.170 7 C -0.566 4.566 8 H 0.049 0.951 9 C -0.038 4.038 10 C -0.044 4.044 11 N -0.303 5.303 12 C -0.009 4.009 13 H 0.105 0.895 14 C -0.109 4.109 15 C -0.060 4.060 16 C -0.118 4.118 17 C -0.139 4.139 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.075 4.075 21 Cl -0.043 7.043 22 C -0.011 4.011 23 H 0.080 0.920 24 C -0.190 4.190 25 C -0.185 4.185 26 C -0.032 4.032 27 O -0.310 6.310 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.163 0.837 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.224 -9.736 -2.280 23.462 hybrid contribution -0.790 0.424 1.195 1.494 sum 20.434 -9.312 -1.086 22.482 Atomic orbital electron populations 1.70066 1.08321 1.28078 1.52792 1.25942 0.95492 1.03338 0.94139 0.85659 0.79454 0.78351 0.79141 1.19327 1.21298 1.16980 1.21388 0.91990 0.92975 1.50266 0.95142 1.19388 0.93276 0.94444 0.96676 1.21680 0.86466 0.97204 0.99005 1.60677 1.07702 1.14583 1.47298 1.21713 0.99238 0.87167 0.92811 0.89483 1.20608 0.99495 0.98863 0.91923 1.19586 0.92785 0.96816 0.96852 1.21080 1.00300 0.94815 0.95625 1.21483 0.95761 0.99706 0.96992 1.21354 0.94392 0.97068 1.00264 1.21246 1.01026 0.96095 0.95130 1.20933 0.93458 0.94603 0.98460 1.98341 1.78123 1.49536 1.78314 1.23514 0.98316 0.82997 0.96250 0.91974 1.23194 1.02713 0.98960 0.94137 1.23252 1.02676 0.94068 0.98456 1.23545 0.95828 0.99975 0.83872 1.88415 1.72044 1.28880 1.41612 0.92573 0.96403 0.96092 0.92526 0.96159 0.83733 0.92173 0.89701 0.86804 0.84489 0.82621 0.83346 0.89376 0.90532 0.90654 0.87828 0.88776 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 2 C 0.01 0.44 5.47 84.66 0.46 0.91 16 3 Si 0.95 44.14 27.47 68.60 1.88 46.02 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 7 C -0.53 -30.03 9.66 25.60 0.25 -29.78 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 9 C 0.00 0.00 4.33 29.85 0.13 0.13 16 10 C 0.09 3.23 4.76 86.30 0.41 3.64 16 11 N -0.67 -20.50 5.92 -491.56 -2.91 -23.41 16 12 C 0.10 2.76 2.16 44.91 0.10 2.86 16 13 H 0.09 2.30 7.92 -2.39 -0.02 2.28 16 14 C -0.07 -2.07 4.16 29.85 0.12 -1.95 16 15 C -0.06 -1.68 4.89 -19.84 -0.10 -1.78 16 16 C -0.10 -2.91 9.54 22.26 0.21 -2.70 16 17 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 18 C -0.11 -2.26 10.05 22.26 0.22 -2.04 16 19 C -0.12 -2.45 9.83 22.29 0.22 -2.23 16 20 C -0.05 -1.20 6.32 22.33 0.14 -1.06 16 21 Cl -0.07 -1.66 27.21 -2.72 -0.07 -1.74 16 22 C 0.05 1.30 2.60 31.06 0.08 1.38 16 23 H 0.06 1.97 6.27 -2.39 -0.01 1.96 16 24 C -0.15 -3.32 5.85 31.91 0.19 -3.13 16 25 C -0.15 -2.58 7.16 32.10 0.23 -2.35 16 26 C 0.04 0.84 7.78 72.65 0.57 1.41 16 27 O -0.39 -10.36 10.21 -148.98 -1.52 -11.88 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 30 H 0.02 0.95 7.57 -2.39 -0.02 0.94 16 31 H 0.06 2.27 5.98 -2.39 -0.01 2.26 16 32 H 0.02 0.79 6.35 -2.39 -0.02 0.77 16 33 H 0.34 9.66 8.17 -89.70 -0.73 8.92 16 34 H 0.06 1.94 6.18 -2.39 -0.01 1.93 16 35 H 0.08 2.46 6.49 -2.38 -0.02 2.44 16 36 H 0.11 3.75 7.81 -2.91 -0.02 3.73 16 37 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.09 1.71 7.75 -2.38 -0.02 1.69 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -65.95 368.98 1.34 -64.61 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.20 Total: 25.05 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 3.46 Total: -39.40 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.61 Total: -82.67 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.52 Total: -11.88 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.07 Total: -1.74 kcal Total: -65.95 1.34 -64.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453195913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.161 kcal (2) G-P(sol) polarization free energy of solvation -65.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds