Wall clock time and date at job start Tue Mar 31 2020 13:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99995 * 2 1 4 4 H 1.48500 * 109.47670 * 240.00094 * 3 2 1 5 5 H 1.48505 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46944 * 119.99881 * 3 2 1 7 7 C 1.37879 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47297 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47507 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00105 * 184.10169 * 11 10 9 13 13 H 1.08997 * 109.47368 * 34.24714 * 12 11 10 14 14 C 1.53000 * 109.46969 * 154.24480 * 12 11 10 15 15 C 1.50700 * 109.46975 * 295.00052 * 14 12 11 16 16 C 1.38237 * 120.01026 * 100.00353 * 15 14 12 17 17 C 1.38216 * 120.01682 * 179.97438 * 16 15 14 18 18 C 1.38264 * 120.02298 * 0.02562 * 17 16 15 19 19 C 1.38195 * 120.01673 * 359.97438 * 18 17 16 20 20 C 1.38330 * 120.00562 * 279.97522 * 15 14 12 21 21 Cl 1.73608 * 120.01463 * 0.04942 * 20 15 14 22 22 C 1.52997 * 109.46967 * 274.24098 * 12 11 10 23 23 H 1.09001 * 109.82293 * 64.45185 * 22 12 11 24 24 C 1.54381 * 109.83502 * 303.46898 * 22 12 11 25 25 C 1.55308 * 102.25776 * 219.13176 * 24 22 12 26 26 C 1.54954 * 100.93840 * 34.13204 * 25 24 22 27 27 O 1.43244 * 109.82899 * 185.33637 * 22 12 11 28 28 H 0.96996 * 119.99903 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47261 * 60.00541 * 9 7 2 30 30 H 1.09007 * 109.47409 * 300.00769 * 9 7 2 31 31 H 1.09006 * 109.47372 * 60.00318 * 10 9 7 32 32 H 1.09004 * 109.47434 * 300.00040 * 10 9 7 33 33 H 1.00899 * 111.00078 * 308.05482 * 11 10 9 34 34 H 1.08999 * 109.47056 * 174.99907 * 14 12 11 35 35 H 1.09001 * 109.47770 * 54.99648 * 14 12 11 36 36 H 1.08000 * 119.98817 * 359.95081 * 16 15 14 37 37 H 1.07990 * 119.98989 * 179.97438 * 17 16 15 38 38 H 1.08003 * 119.99311 * 179.70001 * 18 17 16 39 39 H 1.08003 * 120.00713 * 180.02562 * 19 18 17 40 40 H 1.09004 * 110.84330 * 337.32487 * 24 22 12 41 41 H 1.08999 * 110.84892 * 100.94007 * 24 22 12 42 42 H 1.08998 * 111.12085 * 276.21591 * 25 24 22 43 43 H 1.08991 * 111.16240 * 152.06381 * 25 24 22 44 44 H 1.09003 * 110.30726 * 204.64180 * 26 25 24 45 45 H 1.08996 * 110.38892 * 82.51602 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4324 -6.0741 0.0969 13 1 3.2837 -5.8005 0.7202 14 6 1.7046 -7.2658 0.7223 15 6 1.3273 -6.9346 2.1432 16 6 0.0372 -6.5378 2.4415 17 6 -0.3091 -6.2346 3.7448 18 6 0.6348 -6.3274 4.7508 19 6 1.9249 -6.7240 4.4540 20 6 2.2719 -7.0283 3.1495 21 17 3.8926 -7.5260 2.7757 22 6 2.9246 -6.4536 -1.3011 23 1 3.5117 -5.6366 -1.7207 24 6 1.7192 -6.7587 -2.2160 25 6 2.2301 -7.9711 -3.0413 26 6 3.1108 -8.6923 -1.9900 27 8 3.7245 -7.6397 -1.2292 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.8270 -4.9573 0.7403 34 1 2.3598 -8.1368 0.7139 35 1 0.8037 -7.4833 0.1486 36 1 -0.7002 -6.4643 1.6559 37 1 -1.3170 -5.9242 3.9772 38 1 0.3649 -6.0857 5.7683 39 1 2.6619 -6.7969 5.2400 40 1 0.8441 -7.0320 -1.6263 41 1 1.5012 -5.9113 -2.8659 42 1 2.8251 -7.6432 -3.8937 43 1 1.4036 -8.6047 -3.3627 44 1 3.8724 -9.2955 -2.4842 45 1 2.4950 -9.3171 -1.3431 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453195915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:38 Heat of formation + Delta-G solvation = -44.346143 kcal Electronic energy + Delta-G solvation = -25662.317041 eV Core-core repulsion = 22090.582868 eV Total energy + Delta-G solvation = -3571.734173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09933 -39.12222 -36.38823 -36.29344 -33.60219 -32.24978 -31.91026 -30.81347 -30.40020 -28.28601 -27.15416 -24.21583 -23.44253 -22.70758 -21.73732 -21.56667 -20.45229 -19.46471 -17.20806 -16.58554 -16.28218 -16.00365 -15.73678 -15.39234 -15.19064 -14.54597 -14.23657 -14.07042 -13.79580 -13.61923 -13.53444 -13.10829 -12.88143 -12.74927 -12.24809 -11.86161 -11.78929 -11.59074 -11.51238 -11.36729 -11.26058 -11.17374 -11.11376 -10.91791 -10.82003 -10.59845 -10.49577 -10.47015 -9.88892 -9.55355 -9.25619 -9.15257 -8.90953 -8.62232 -8.33916 -7.80573 -5.98771 -4.00850 1.12268 1.21530 2.17675 3.34466 3.38471 3.41367 3.57745 3.86620 4.45851 4.55926 4.68708 4.72127 4.83894 4.90062 4.94565 4.98697 5.19969 5.23066 5.31240 5.35447 5.37421 5.45545 5.46197 5.67769 5.69024 5.74930 5.80814 5.91148 5.96432 6.00869 6.13245 6.20047 6.23608 6.34207 6.37248 6.42783 6.43697 6.48820 6.76186 7.00162 7.13846 7.51607 7.74221 7.83886 7.96329 8.08703 8.45338 9.05897 9.62816 11.12615 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009348 B = 0.004371 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.514919 B = 6404.687345 C = 8141.017110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.066 3.934 11 N -0.683 5.683 12 C 0.083 3.917 13 H 0.052 0.948 14 C -0.086 4.086 15 C -0.073 4.073 16 C -0.105 4.105 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.034 4.034 21 Cl -0.065 7.065 22 C 0.093 3.907 23 H 0.080 0.920 24 C -0.131 4.131 25 C -0.162 4.162 26 C 0.051 3.949 27 O -0.378 6.378 28 H 0.260 0.740 29 H 0.025 0.975 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.057 0.943 33 H 0.339 0.661 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 -20.000 3.365 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.062 4.062 11 N -0.317 5.317 12 C -0.027 4.027 13 H 0.070 0.930 14 C -0.123 4.123 15 C -0.074 4.074 16 C -0.123 4.123 17 C -0.128 4.128 18 C -0.132 4.132 19 C -0.130 4.130 20 C -0.061 4.061 21 Cl -0.036 7.036 22 C 0.035 3.965 23 H 0.098 0.902 24 C -0.169 4.169 25 C -0.199 4.199 26 C -0.026 4.026 27 O -0.297 6.297 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.393 -19.976 2.758 20.213 hybrid contribution 0.675 1.131 0.884 1.586 sum 2.068 -18.845 3.642 19.305 Atomic orbital electron populations 1.69958 1.06000 1.26636 1.50721 1.24977 0.94818 0.99119 0.95297 0.86674 0.79600 0.83187 0.78628 1.20216 1.21276 1.20306 1.21134 0.92954 0.91018 1.50823 0.92854 1.19050 0.93958 0.90499 0.97523 1.22207 0.97000 0.88376 0.98621 1.60580 1.16498 1.01985 1.52588 1.21709 0.95019 0.90933 0.95084 0.92972 1.20890 1.01629 0.99341 0.90449 1.19842 0.92949 0.99237 0.95382 1.21141 0.95303 0.98703 0.97131 1.21269 0.99983 0.98701 0.92829 1.21099 0.92631 0.99659 0.99821 1.21036 0.97244 0.99978 0.94732 1.20860 0.86602 1.04037 0.94556 1.98374 1.20908 1.89588 1.94760 1.22643 0.91462 0.87518 0.94909 0.90191 1.22977 0.98360 0.97804 0.97713 1.23323 0.99920 0.97946 0.98747 1.23326 0.96180 0.90728 0.92372 1.88411 1.47631 1.21159 1.72494 0.92992 0.95699 0.96983 0.96632 0.92408 0.84101 0.89340 0.90066 0.84731 0.85297 0.85305 0.85222 0.90048 0.89743 0.90752 0.90389 0.90368 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.70 5.19 -27.89 -0.14 0.56 16 10 C 0.07 1.41 5.47 -3.83 -0.02 1.39 16 11 N -0.68 -11.89 5.84 -106.73 -0.62 -12.52 16 12 C 0.08 1.26 2.03 -67.71 -0.14 1.12 16 13 H 0.05 0.90 6.88 -51.93 -0.36 0.54 16 14 C -0.09 -1.10 3.94 -27.88 -0.11 -1.21 16 15 C -0.07 -0.96 4.59 -104.59 -0.48 -1.44 16 16 C -0.10 -1.27 8.31 -39.59 -0.33 -1.60 16 17 C -0.11 -1.23 10.05 -39.58 -0.40 -1.63 16 18 C -0.11 -1.24 10.05 -39.59 -0.40 -1.64 16 19 C -0.11 -1.32 9.83 -39.55 -0.39 -1.71 16 20 C -0.03 -0.45 6.31 -39.50 -0.25 -0.70 16 21 Cl -0.07 -0.87 26.65 -51.86 -1.38 -2.25 16 22 C 0.09 1.34 3.47 -26.01 -0.09 1.25 16 23 H 0.08 1.28 7.72 -51.93 -0.40 0.88 16 24 C -0.13 -1.63 5.89 -24.78 -0.15 -1.78 16 25 C -0.16 -1.62 7.16 -24.48 -0.18 -1.80 16 26 C 0.05 0.54 7.62 38.19 0.29 0.83 16 27 O -0.38 -5.29 10.08 -35.23 -0.36 -5.64 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.34 7.95 -51.93 -0.41 -0.07 16 32 H 0.06 1.24 7.70 -51.93 -0.40 0.84 16 33 H 0.34 5.88 6.26 -39.29 -0.25 5.63 16 34 H 0.09 1.14 6.43 -51.93 -0.33 0.81 16 35 H 0.08 0.96 6.30 -51.93 -0.33 0.63 16 36 H 0.13 1.46 8.04 -52.49 -0.42 1.04 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 39 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 40 H 0.08 0.99 6.05 -51.93 -0.31 0.68 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 LS Contribution 371.65 15.07 5.60 5.60 Total: -1.00 -30.66 371.65 -11.21 -41.87 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.98 Total: 4.17 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -3.19 Total: -21.92 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.11 Total: -38.64 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.36 Total: -5.64 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.38 Total: -2.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.66 -11.21 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453195915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.478 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds