Wall clock time and date at job start Tue Mar 31 2020 13:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99995 * 2 1 4 4 H 1.48500 * 109.47670 * 240.00094 * 3 2 1 5 5 H 1.48505 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46944 * 119.99881 * 3 2 1 7 7 C 1.37879 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47297 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47507 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00105 * 184.10169 * 11 10 9 13 13 H 1.08997 * 109.47368 * 34.24714 * 12 11 10 14 14 C 1.53000 * 109.46969 * 154.24480 * 12 11 10 15 15 C 1.50700 * 109.46975 * 295.00052 * 14 12 11 16 16 C 1.38237 * 120.01026 * 100.00353 * 15 14 12 17 17 C 1.38216 * 120.01682 * 179.97438 * 16 15 14 18 18 C 1.38264 * 120.02298 * 0.02562 * 17 16 15 19 19 C 1.38195 * 120.01673 * 359.97438 * 18 17 16 20 20 C 1.38330 * 120.00562 * 279.97522 * 15 14 12 21 21 Cl 1.73608 * 120.01463 * 0.04942 * 20 15 14 22 22 C 1.52997 * 109.46967 * 274.24098 * 12 11 10 23 23 H 1.09001 * 109.82293 * 64.45185 * 22 12 11 24 24 C 1.54381 * 109.83502 * 303.46898 * 22 12 11 25 25 C 1.55308 * 102.25776 * 219.13176 * 24 22 12 26 26 C 1.54954 * 100.93840 * 34.13204 * 25 24 22 27 27 O 1.43244 * 109.82899 * 185.33637 * 22 12 11 28 28 H 0.96996 * 119.99903 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47261 * 60.00541 * 9 7 2 30 30 H 1.09007 * 109.47409 * 300.00769 * 9 7 2 31 31 H 1.09006 * 109.47372 * 60.00318 * 10 9 7 32 32 H 1.09004 * 109.47434 * 300.00040 * 10 9 7 33 33 H 1.00899 * 111.00078 * 308.05482 * 11 10 9 34 34 H 1.08999 * 109.47056 * 174.99907 * 14 12 11 35 35 H 1.09001 * 109.47770 * 54.99648 * 14 12 11 36 36 H 1.08000 * 119.98817 * 359.95081 * 16 15 14 37 37 H 1.07990 * 119.98989 * 179.97438 * 17 16 15 38 38 H 1.08003 * 119.99311 * 179.70001 * 18 17 16 39 39 H 1.08003 * 120.00713 * 180.02562 * 19 18 17 40 40 H 1.09004 * 110.84330 * 337.32487 * 24 22 12 41 41 H 1.08999 * 110.84892 * 100.94007 * 24 22 12 42 42 H 1.08998 * 111.12085 * 276.21591 * 25 24 22 43 43 H 1.08991 * 111.16240 * 152.06381 * 25 24 22 44 44 H 1.09003 * 110.30726 * 204.64180 * 26 25 24 45 45 H 1.08996 * 110.38892 * 82.51602 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4324 -6.0741 0.0969 13 1 3.2837 -5.8005 0.7202 14 6 1.7046 -7.2658 0.7223 15 6 1.3273 -6.9346 2.1432 16 6 0.0372 -6.5378 2.4415 17 6 -0.3091 -6.2346 3.7448 18 6 0.6348 -6.3274 4.7508 19 6 1.9249 -6.7240 4.4540 20 6 2.2719 -7.0283 3.1495 21 17 3.8926 -7.5260 2.7757 22 6 2.9246 -6.4536 -1.3011 23 1 3.5117 -5.6366 -1.7207 24 6 1.7192 -6.7587 -2.2160 25 6 2.2301 -7.9711 -3.0413 26 6 3.1108 -8.6923 -1.9900 27 8 3.7245 -7.6397 -1.2292 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.8270 -4.9573 0.7403 34 1 2.3598 -8.1368 0.7139 35 1 0.8037 -7.4833 0.1486 36 1 -0.7002 -6.4643 1.6559 37 1 -1.3170 -5.9242 3.9772 38 1 0.3649 -6.0857 5.7683 39 1 2.6619 -6.7969 5.2400 40 1 0.8441 -7.0320 -1.6263 41 1 1.5012 -5.9113 -2.8659 42 1 2.8251 -7.6432 -3.8937 43 1 1.4036 -8.6047 -3.3627 44 1 3.8724 -9.2955 -2.4842 45 1 2.4950 -9.3171 -1.3431 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453195915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:36 Heat of formation + Delta-G solvation = -61.116036 kcal Electronic energy + Delta-G solvation = -25663.044238 eV Core-core repulsion = 22090.582868 eV Total energy + Delta-G solvation = -3572.461370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.14671 -40.07344 -37.67979 -37.37502 -35.44023 -33.80107 -32.90862 -31.86530 -31.59463 -29.84872 -28.28804 -26.02284 -24.65423 -23.66916 -22.79003 -22.56058 -22.17844 -20.65168 -18.51185 -18.12813 -17.55067 -17.09607 -16.81711 -16.60481 -16.42367 -16.17228 -15.51679 -15.27488 -15.09843 -14.74340 -14.63184 -14.36081 -14.20255 -13.91798 -13.74395 -13.26852 -13.03345 -12.88981 -12.81386 -12.55693 -12.47477 -12.46945 -12.33500 -12.23286 -12.15377 -12.00642 -11.77509 -11.54145 -11.39633 -11.35935 -11.24667 -10.55533 -10.48317 -9.84839 -9.58933 -9.31187 -8.20074 -6.30858 0.18661 0.29658 1.19308 1.39662 1.42268 1.50225 2.40037 2.65245 2.80313 3.13308 3.51777 3.57908 3.72233 3.81813 3.88799 4.07181 4.09726 4.17614 4.31995 4.35300 4.42583 4.44188 4.47829 4.52663 4.59837 4.70473 4.78237 4.85673 4.90070 4.96177 5.01187 5.03734 5.07561 5.10069 5.22313 5.29025 5.39304 5.42249 5.45771 5.49962 5.67597 5.76764 5.87939 6.03940 6.20737 6.30066 6.51437 6.84702 7.37886 8.91560 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009348 B = 0.004371 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.514919 B = 6404.687345 C = 8141.017110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.038 3.962 10 C 0.087 3.913 11 N -0.674 5.674 12 C 0.089 3.911 13 H 0.031 0.969 14 C -0.073 4.073 15 C -0.090 4.090 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.051 4.051 21 Cl -0.073 7.073 22 C 0.094 3.906 23 H 0.057 0.943 24 C -0.130 4.130 25 C -0.151 4.151 26 C 0.044 3.956 27 O -0.395 6.395 28 H 0.264 0.736 29 H 0.000 1.000 30 H -0.009 1.009 31 H 0.006 0.994 32 H 0.055 0.945 33 H 0.341 0.659 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 -20.599 3.594 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.042 4.042 11 N -0.308 5.308 12 C -0.022 4.022 13 H 0.049 0.951 14 C -0.110 4.110 15 C -0.091 4.091 16 C -0.133 4.133 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.078 4.078 21 Cl -0.045 7.045 22 C 0.035 3.965 23 H 0.075 0.925 24 C -0.168 4.168 25 C -0.189 4.189 26 C -0.032 4.032 27 O -0.314 6.314 28 H 0.073 0.927 29 H 0.019 0.981 30 H 0.009 0.991 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.162 0.838 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.266 -20.601 2.983 20.854 hybrid contribution 0.687 1.270 0.848 1.675 sum 1.953 -19.331 3.831 19.804 Atomic orbital electron populations 1.70078 1.07592 1.27819 1.51212 1.25872 0.95735 1.02979 0.94558 0.85564 0.78382 0.78408 0.79074 1.19287 1.20500 1.19449 1.21539 0.93313 0.92428 1.51213 0.92740 1.18859 0.94047 0.91858 0.95173 1.21796 0.95676 0.88784 0.97969 1.60494 1.16513 1.01130 1.52668 1.21663 0.94024 0.90817 0.95656 0.95121 1.20757 1.01751 0.97949 0.90581 1.19932 0.93535 1.00280 0.95338 1.21359 0.95165 0.98655 0.98080 1.21615 1.01173 0.98013 0.92519 1.21469 0.92045 0.98488 1.01150 1.21318 0.98194 0.99775 0.94603 1.21076 0.86376 1.04963 0.95376 1.98364 1.21506 1.89727 1.94858 1.22489 0.91983 0.87454 0.94525 0.92547 1.22939 0.97657 0.98580 0.97587 1.23295 1.00494 0.96875 0.98188 1.23577 0.96982 0.90106 0.92571 1.88394 1.48159 1.21574 1.73241 0.92694 0.98124 0.99097 0.97619 0.92697 0.83883 0.89203 0.88793 0.83795 0.83175 0.82635 0.83829 0.89584 0.91044 0.90575 0.87968 0.88690 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.04 2.04 5.19 29.84 0.15 2.20 16 10 C 0.09 3.81 5.47 86.30 0.47 4.28 16 11 N -0.67 -23.95 5.84 -491.58 -2.87 -26.83 16 12 C 0.09 2.72 2.03 44.91 0.09 2.81 16 13 H 0.03 1.09 6.88 -2.39 -0.02 1.07 16 14 C -0.07 -1.84 3.94 29.85 0.12 -1.72 16 15 C -0.09 -2.32 4.59 -19.84 -0.09 -2.41 16 16 C -0.11 -2.67 8.31 22.26 0.18 -2.49 16 17 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16 18 C -0.11 -2.28 10.05 22.27 0.22 -2.05 16 19 C -0.12 -2.74 9.83 22.29 0.22 -2.52 16 20 C -0.05 -1.35 6.31 22.32 0.14 -1.20 16 21 Cl -0.07 -1.95 26.65 -2.72 -0.07 -2.02 16 22 C 0.09 2.72 3.47 31.06 0.11 2.83 16 23 H 0.06 1.88 7.72 -2.39 -0.02 1.86 16 24 C -0.13 -3.15 5.89 31.86 0.19 -2.96 16 25 C -0.15 -2.73 7.16 32.06 0.23 -2.50 16 26 C 0.04 0.84 7.62 72.65 0.55 1.39 16 27 O -0.39 -10.82 10.08 -148.98 -1.50 -12.32 16 28 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 31 H 0.01 0.26 7.95 -2.38 -0.02 0.24 16 32 H 0.05 2.43 7.70 -2.38 -0.02 2.41 16 33 H 0.34 11.97 6.26 -89.69 -0.56 11.41 16 34 H 0.09 2.25 6.43 -2.39 -0.02 2.24 16 35 H 0.09 2.10 6.30 -2.39 -0.02 2.08 16 36 H 0.14 2.98 8.04 -2.91 -0.02 2.95 16 37 H 0.15 2.41 8.06 -2.92 -0.02 2.39 16 38 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.09 1.98 6.05 -2.39 -0.01 1.97 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 1.15 8.05 -2.39 -0.02 1.13 16 Total: -1.00 -66.40 371.65 1.79 -64.60 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.42 Total: 22.96 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.51 Total: -37.10 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -2.59 Total: -82.79 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.50 Total: -12.32 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.07 Total: -2.02 kcal Total: -66.40 1.79 -64.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453195915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.487 kcal (2) G-P(sol) polarization free energy of solvation -66.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds