Wall clock time and date at job start Tue Mar 31 2020 13:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99906 * 2 1 4 4 H 1.48489 * 109.47484 * 269.99940 * 3 2 1 5 5 H 1.48507 * 109.47111 * 30.00150 * 3 2 1 6 6 H 1.48508 * 109.47032 * 149.99808 * 3 2 1 7 7 C 1.37876 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47161 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47463 * 179.97438 * 10 9 7 12 12 C 1.46896 * 111.00142 * 185.22075 * 11 10 9 13 13 H 1.09001 * 109.47302 * 33.63466 * 12 11 10 14 14 C 1.53000 * 109.47203 * 153.64231 * 12 11 10 15 15 C 1.50704 * 109.46584 * 294.99843 * 14 12 11 16 16 C 1.38228 * 120.01005 * 100.00331 * 15 14 12 17 17 C 1.38219 * 120.01367 * 179.97438 * 16 15 14 18 18 C 1.38259 * 120.03154 * 0.04163 * 17 16 15 19 19 C 1.38201 * 120.00635 * 359.97438 * 18 17 16 20 20 C 1.38336 * 120.00287 * 279.72370 * 15 14 12 21 21 Cl 1.73599 * 120.01598 * 359.97438 * 20 15 14 22 22 C 1.53006 * 109.46846 * 273.63651 * 12 11 10 23 23 H 1.08998 * 109.86707 * 53.29501 * 22 12 11 24 24 C 1.54099 * 109.87776 * 174.30095 * 22 12 11 25 25 C 1.54813 * 104.18694 * 121.45319 * 24 22 12 26 26 C 1.54991 * 102.09279 * 20.88324 * 25 24 22 27 27 O 1.43746 * 109.88097 * 292.13151 * 22 12 11 28 28 H 0.96997 * 119.99783 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47343 * 59.99888 * 9 7 2 30 30 H 1.09000 * 109.47063 * 300.00158 * 9 7 2 31 31 H 1.08996 * 109.47363 * 59.99558 * 10 9 7 32 32 H 1.09000 * 109.46982 * 299.99865 * 10 9 7 33 33 H 1.00903 * 110.99679 * 61.26276 * 11 10 9 34 34 H 1.08998 * 109.47075 * 54.99110 * 14 12 11 35 35 H 1.08997 * 109.46989 * 174.99655 * 14 12 11 36 36 H 1.08000 * 119.99294 * 359.97438 * 16 15 14 37 37 H 1.08000 * 119.98538 * 180.02562 * 17 16 15 38 38 H 1.07994 * 119.99562 * 179.97438 * 18 17 16 39 39 H 1.08002 * 119.99920 * 180.02562 * 19 18 17 40 40 H 1.08996 * 110.48888 * 240.12890 * 24 22 12 41 41 H 1.09000 * 110.49124 * 2.77651 * 24 22 12 42 42 H 1.09004 * 110.90300 * 139.07601 * 25 24 22 43 43 H 1.08990 * 110.90809 * 262.64320 * 25 24 22 44 44 H 1.09006 * 110.62405 * 81.47183 * 26 25 24 45 45 H 1.08995 * 110.61822 * 204.31548 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.3999 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 7 1.5108 -4.9343 -0.0020 12 6 2.4303 -6.0731 0.1230 13 1 3.2765 -5.7898 0.7491 14 6 1.6960 -7.2538 0.7615 15 6 1.3066 -6.8989 2.1734 16 6 0.0143 -6.4963 2.4537 17 6 -0.3431 -6.1713 3.7487 18 6 0.5918 -6.2478 4.7645 19 6 1.8842 -6.6500 4.4854 20 6 2.2409 -6.9816 3.1902 21 17 3.8620 -7.4949 2.8404 22 6 2.9346 -6.4760 -1.2642 23 1 3.3534 -5.6077 -1.7727 24 6 4.0073 -7.5745 -1.1331 25 6 3.4383 -8.7599 -1.9502 26 6 2.4167 -8.0542 -2.8778 27 8 1.8537 -7.0244 -2.0370 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5563 -0.8919 30 1 0.6240 -2.5574 0.8880 31 1 2.8713 -3.6047 0.8890 32 1 2.8726 -3.6039 -0.8909 33 1 0.9382 -5.0209 -0.8282 34 1 0.8000 -7.4799 0.1834 35 1 2.3505 -8.1253 0.7732 36 1 -0.7163 -6.4356 1.6606 37 1 -1.3530 -5.8571 3.9673 38 1 0.3120 -5.9934 5.7760 39 1 2.6143 -6.7102 5.2790 40 1 4.9527 -7.2372 -1.5579 41 1 4.1370 -7.8584 -0.0888 42 1 4.2230 -9.2432 -2.5323 43 1 2.9414 -9.4785 -1.2986 44 1 2.9199 -7.6141 -3.7388 45 1 1.6454 -8.7531 -3.2014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453195918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:45 Heat of formation + Delta-G solvation = -44.936141 kcal Electronic energy + Delta-G solvation = -25612.478100 eV Core-core repulsion = 22040.718342 eV Total energy + Delta-G solvation = -3571.759757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.01895 -39.02700 -36.32971 -36.15909 -33.58288 -32.33308 -32.02807 -30.60225 -30.35103 -28.30324 -26.95709 -24.26763 -23.28321 -22.51776 -21.87395 -21.23142 -20.48002 -19.95739 -17.07536 -16.50710 -16.19591 -16.18708 -15.57742 -15.39999 -14.92200 -14.52846 -14.22224 -13.98283 -13.76353 -13.64721 -13.61182 -13.06997 -12.77463 -12.44536 -12.30324 -11.91533 -11.82365 -11.51921 -11.41089 -11.35715 -11.34876 -11.13241 -10.98263 -10.91308 -10.86065 -10.74719 -10.49476 -10.44076 -9.93895 -9.71139 -9.33318 -9.08213 -8.66484 -8.45509 -8.30076 -7.66089 -5.94981 -3.96975 1.34341 1.49036 2.25223 3.34401 3.40491 3.43985 3.80423 3.82169 4.45462 4.48643 4.66324 4.81586 4.84912 4.86909 4.97883 5.07714 5.12278 5.22112 5.34195 5.40992 5.47671 5.50918 5.57172 5.59944 5.63058 5.67150 5.75952 5.84265 5.92847 5.95473 6.05636 6.17173 6.23597 6.37840 6.43397 6.49445 6.57959 6.71080 6.88921 7.00081 7.06621 7.57862 7.81585 7.89706 8.06839 8.17452 8.49978 9.10441 9.66315 11.16440 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.004364 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.197429 B = 6414.166669 C = 8155.920204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.052 0.948 9 C 0.029 3.971 10 C 0.068 3.932 11 N -0.678 5.678 12 C 0.098 3.902 13 H 0.086 0.914 14 C -0.067 4.067 15 C -0.046 4.046 16 C -0.080 4.080 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.039 4.039 21 Cl -0.083 7.083 22 C 0.047 3.953 23 H 0.069 0.931 24 C -0.153 4.153 25 C -0.153 4.153 26 C 0.047 3.953 27 O -0.365 6.365 28 H 0.260 0.740 29 H 0.013 0.987 30 H 0.024 0.976 31 H 0.054 0.946 32 H 0.012 0.988 33 H 0.343 0.657 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.552 -20.970 2.675 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.060 4.060 11 N -0.308 5.308 12 C -0.013 4.013 13 H 0.104 0.896 14 C -0.105 4.105 15 C -0.047 4.047 16 C -0.098 4.098 17 C -0.131 4.131 18 C -0.137 4.137 19 C -0.133 4.133 20 C -0.065 4.065 21 Cl -0.054 7.054 22 C -0.012 4.012 23 H 0.087 0.913 24 C -0.191 4.191 25 C -0.191 4.191 26 C -0.030 4.030 27 O -0.284 6.284 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.162 0.838 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.180 -20.780 3.343 21.458 hybrid contribution 1.353 1.024 -0.964 1.952 sum 5.533 -19.756 2.379 20.654 Atomic orbital electron populations 1.69978 1.05981 1.26444 1.50830 1.24981 0.94808 0.99079 0.95402 0.86628 0.79879 0.83661 0.78019 1.20751 1.21214 1.19934 1.21188 0.92905 0.91132 1.50620 0.92933 1.19009 0.93962 0.90208 0.97635 1.22166 0.96877 0.88811 0.98174 1.60604 1.22963 1.01169 1.46061 1.21761 0.95458 0.91781 0.92325 0.89614 1.20579 1.01597 0.97196 0.91135 1.19607 0.92730 0.97881 0.94482 1.20993 0.95352 0.96905 0.96540 1.21244 0.99832 0.98966 0.93042 1.21009 0.92731 1.00361 0.99569 1.20918 0.97080 1.00512 0.94786 1.20775 0.85682 1.05184 0.94868 1.98327 1.22219 1.89463 1.95369 1.23581 0.87357 0.96069 0.94218 0.91279 1.23024 0.98881 0.95289 1.01899 1.23115 0.99145 0.98158 0.98696 1.23497 0.96320 0.89746 0.93426 1.88878 1.31279 1.52955 1.55330 0.93083 0.96861 0.95729 0.92710 0.96971 0.83831 0.89950 0.90925 0.85087 0.85719 0.85685 0.85615 0.90984 0.89959 0.90600 0.90541 0.92531 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.78 5.28 -27.88 -0.15 0.63 16 10 C 0.07 1.46 5.45 -3.82 -0.02 1.44 16 11 N -0.68 -12.20 5.94 -106.73 -0.63 -12.83 16 12 C 0.10 1.44 1.67 -67.71 -0.11 1.33 16 13 H 0.09 1.35 6.88 -51.93 -0.36 0.99 16 14 C -0.07 -0.89 4.03 -27.88 -0.11 -1.00 16 15 C -0.05 -0.65 4.87 -104.59 -0.51 -1.16 16 16 C -0.08 -1.11 9.67 -39.59 -0.38 -1.49 16 17 C -0.11 -1.44 10.05 -39.58 -0.40 -1.84 16 18 C -0.12 -1.44 10.05 -39.59 -0.40 -1.83 16 19 C -0.11 -1.45 9.83 -39.55 -0.39 -1.83 16 20 C -0.04 -0.53 6.31 -39.50 -0.25 -0.78 16 21 Cl -0.08 -1.02 26.68 -51.86 -1.38 -2.40 16 22 C 0.05 0.63 3.16 -26.15 -0.08 0.55 16 23 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 24 C -0.15 -1.61 6.11 -25.20 -0.15 -1.77 16 25 C -0.15 -1.36 7.15 -24.72 -0.18 -1.54 16 26 C 0.05 0.47 7.72 38.21 0.29 0.77 16 27 O -0.37 -4.96 9.83 -35.23 -0.35 -5.31 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 1.21 7.92 -51.93 -0.41 0.79 16 32 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 33 H 0.34 6.29 8.10 -39.29 -0.32 5.97 16 34 H 0.08 1.11 7.56 -51.93 -0.39 0.71 16 35 H 0.07 0.87 5.87 -51.93 -0.30 0.56 16 36 H 0.13 1.75 8.04 -52.49 -0.42 1.33 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.87 6.67 -51.93 -0.35 0.52 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -31.03 375.86 -11.34 -42.37 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.11 Total: 4.28 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -3.25 Total: -22.24 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.10 Total: -39.37 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.35 Total: -5.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.38 Total: -2.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.03 -11.34 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453195918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.567 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds