Wall clock time and date at job start Tue Mar 31 2020 13:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99906 * 2 1 4 4 H 1.48489 * 109.47484 * 269.99940 * 3 2 1 5 5 H 1.48507 * 109.47111 * 30.00150 * 3 2 1 6 6 H 1.48508 * 109.47032 * 149.99808 * 3 2 1 7 7 C 1.37876 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47161 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47463 * 179.97438 * 10 9 7 12 12 C 1.46896 * 111.00142 * 185.22075 * 11 10 9 13 13 H 1.09001 * 109.47302 * 33.63466 * 12 11 10 14 14 C 1.53000 * 109.47203 * 153.64231 * 12 11 10 15 15 C 1.50704 * 109.46584 * 294.99843 * 14 12 11 16 16 C 1.38228 * 120.01005 * 100.00331 * 15 14 12 17 17 C 1.38219 * 120.01367 * 179.97438 * 16 15 14 18 18 C 1.38259 * 120.03154 * 0.04163 * 17 16 15 19 19 C 1.38201 * 120.00635 * 359.97438 * 18 17 16 20 20 C 1.38336 * 120.00287 * 279.72370 * 15 14 12 21 21 Cl 1.73599 * 120.01598 * 359.97438 * 20 15 14 22 22 C 1.53006 * 109.46846 * 273.63651 * 12 11 10 23 23 H 1.08998 * 109.86707 * 53.29501 * 22 12 11 24 24 C 1.54099 * 109.87776 * 174.30095 * 22 12 11 25 25 C 1.54813 * 104.18694 * 121.45319 * 24 22 12 26 26 C 1.54991 * 102.09279 * 20.88324 * 25 24 22 27 27 O 1.43746 * 109.88097 * 292.13151 * 22 12 11 28 28 H 0.96997 * 119.99783 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47343 * 59.99888 * 9 7 2 30 30 H 1.09000 * 109.47063 * 300.00158 * 9 7 2 31 31 H 1.08996 * 109.47363 * 59.99558 * 10 9 7 32 32 H 1.09000 * 109.46982 * 299.99865 * 10 9 7 33 33 H 1.00903 * 110.99679 * 61.26276 * 11 10 9 34 34 H 1.08998 * 109.47075 * 54.99110 * 14 12 11 35 35 H 1.08997 * 109.46989 * 174.99655 * 14 12 11 36 36 H 1.08000 * 119.99294 * 359.97438 * 16 15 14 37 37 H 1.08000 * 119.98538 * 180.02562 * 17 16 15 38 38 H 1.07994 * 119.99562 * 179.97438 * 18 17 16 39 39 H 1.08002 * 119.99920 * 180.02562 * 19 18 17 40 40 H 1.08996 * 110.48888 * 240.12890 * 24 22 12 41 41 H 1.09000 * 110.49124 * 2.77651 * 24 22 12 42 42 H 1.09004 * 110.90300 * 139.07601 * 25 24 22 43 43 H 1.08990 * 110.90809 * 262.64320 * 25 24 22 44 44 H 1.09006 * 110.62405 * 81.47183 * 26 25 24 45 45 H 1.08995 * 110.61822 * 204.31548 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.3999 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 7 1.5108 -4.9343 -0.0020 12 6 2.4303 -6.0731 0.1230 13 1 3.2765 -5.7898 0.7491 14 6 1.6960 -7.2538 0.7615 15 6 1.3066 -6.8989 2.1734 16 6 0.0143 -6.4963 2.4537 17 6 -0.3431 -6.1713 3.7487 18 6 0.5918 -6.2478 4.7645 19 6 1.8842 -6.6500 4.4854 20 6 2.2409 -6.9816 3.1902 21 17 3.8620 -7.4949 2.8404 22 6 2.9346 -6.4760 -1.2642 23 1 3.3534 -5.6077 -1.7727 24 6 4.0073 -7.5745 -1.1331 25 6 3.4383 -8.7599 -1.9502 26 6 2.4167 -8.0542 -2.8778 27 8 1.8537 -7.0244 -2.0370 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5563 -0.8919 30 1 0.6240 -2.5574 0.8880 31 1 2.8713 -3.6047 0.8890 32 1 2.8726 -3.6039 -0.8909 33 1 0.9382 -5.0209 -0.8282 34 1 0.8000 -7.4799 0.1834 35 1 2.3505 -8.1253 0.7732 36 1 -0.7163 -6.4356 1.6606 37 1 -1.3530 -5.8571 3.9673 38 1 0.3120 -5.9934 5.7760 39 1 2.6143 -6.7102 5.2790 40 1 4.9527 -7.2372 -1.5579 41 1 4.1370 -7.8584 -0.0888 42 1 4.2230 -9.2432 -2.5323 43 1 2.9414 -9.4785 -1.2986 44 1 2.9199 -7.6141 -3.7388 45 1 1.6454 -8.7531 -3.2014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453195918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:44 Heat of formation + Delta-G solvation = -62.160731 kcal Electronic energy + Delta-G solvation = -25613.225014 eV Core-core repulsion = 22040.718342 eV Total energy + Delta-G solvation = -3572.506672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04653 -40.00190 -37.55370 -37.31975 -35.41693 -33.89879 -32.96398 -31.83071 -31.50143 -29.84430 -28.09558 -26.07593 -24.46027 -23.54679 -22.92251 -22.32026 -22.11231 -21.14746 -18.52975 -18.06791 -17.39787 -17.17528 -16.68722 -16.54828 -16.34712 -15.90055 -15.78511 -15.27095 -14.85035 -14.67688 -14.58633 -14.46126 -14.20798 -13.95636 -13.50709 -13.20981 -13.15202 -12.86241 -12.67398 -12.56778 -12.49078 -12.39002 -12.32750 -12.25797 -12.03454 -11.89745 -11.82513 -11.72100 -11.41634 -11.38588 -11.18446 -10.71183 -10.55550 -9.68938 -9.50333 -9.12180 -8.19408 -6.30745 0.32576 0.47590 1.24217 1.39117 1.40810 1.51856 2.40278 2.80043 2.85150 3.13799 3.45201 3.59433 3.75897 3.92299 3.96385 3.97141 4.12185 4.17481 4.27635 4.37194 4.44437 4.51616 4.53172 4.56011 4.62651 4.71408 4.79911 4.83129 4.87050 4.93174 4.97211 5.07671 5.10306 5.11440 5.19745 5.23161 5.38437 5.44997 5.57051 5.67052 5.70373 5.80042 5.95312 6.01065 6.18034 6.32904 6.58223 6.86298 7.38177 8.92732 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.004364 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.197429 B = 6414.166669 C = 8155.920204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.040 3.960 10 C 0.090 3.910 11 N -0.679 5.679 12 C 0.102 3.898 13 H 0.078 0.922 14 C -0.055 4.055 15 C -0.062 4.062 16 C -0.099 4.099 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.052 4.052 21 Cl -0.074 7.074 22 C 0.050 3.950 23 H 0.049 0.951 24 C -0.149 4.149 25 C -0.144 4.144 26 C 0.038 3.962 27 O -0.388 6.388 28 H 0.263 0.737 29 H -0.012 1.012 30 H -0.007 1.007 31 H 0.050 0.950 32 H 0.013 0.987 33 H 0.340 0.660 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -21.704 3.011 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.075 0.925 9 C 0.002 3.998 10 C -0.039 4.039 11 N -0.309 5.309 12 C -0.009 4.009 13 H 0.096 0.904 14 C -0.092 4.092 15 C -0.063 4.063 16 C -0.117 4.117 17 C -0.141 4.141 18 C -0.138 4.138 19 C -0.140 4.140 20 C -0.078 4.078 21 Cl -0.045 7.045 22 C -0.010 4.010 23 H 0.067 0.933 24 C -0.188 4.188 25 C -0.182 4.182 26 C -0.038 4.038 27 O -0.307 6.307 28 H 0.072 0.928 29 H 0.006 0.994 30 H 0.011 0.989 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.683 -21.544 3.674 22.582 hybrid contribution 0.842 1.207 -1.065 1.817 sum 6.524 -20.337 2.609 21.517 Atomic orbital electron populations 1.70114 1.07770 1.27712 1.51418 1.25937 0.95733 1.03202 0.94615 0.85464 0.78670 0.78495 0.78517 1.19710 1.20575 1.18836 1.21596 0.93369 0.92365 1.50920 0.92469 1.18823 0.94121 0.92058 0.94781 1.21726 0.95391 0.88882 0.97876 1.60502 1.23523 1.00909 1.45953 1.21755 0.94658 0.90966 0.93499 0.90438 1.20458 1.01397 0.96737 0.90640 1.19733 0.93033 0.98616 0.94943 1.21134 0.95590 0.97759 0.97204 1.21528 1.00951 0.98748 0.92875 1.21362 0.92367 0.99390 1.00658 1.21241 0.97793 0.99981 0.94960 1.20949 0.86102 1.05497 0.95270 1.98321 1.21460 1.89366 1.95380 1.23417 0.88141 0.96590 0.92845 0.93305 1.23004 0.98304 0.94989 1.02473 1.23103 0.99280 0.97409 0.98369 1.23744 0.97294 0.89377 0.93357 1.88859 1.31902 1.54041 1.55935 0.92774 0.99396 0.98861 0.93175 0.96888 0.84154 0.90402 0.89421 0.85476 0.84205 0.83060 0.83769 0.90047 0.89855 0.88322 0.89906 0.92164 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.54 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.04 2.20 5.28 29.85 0.16 2.35 16 10 C 0.09 3.99 5.45 86.30 0.47 4.46 16 11 N -0.68 -25.23 5.94 -491.57 -2.92 -28.15 16 12 C 0.10 3.01 1.67 44.92 0.08 3.08 16 13 H 0.08 2.43 6.88 -2.39 -0.02 2.42 16 14 C -0.05 -1.42 4.03 29.85 0.12 -1.30 16 15 C -0.06 -1.74 4.87 -19.84 -0.10 -1.84 16 16 C -0.10 -2.78 9.67 22.26 0.22 -2.57 16 17 C -0.12 -3.11 10.05 22.27 0.22 -2.88 16 18 C -0.12 -2.75 10.05 22.27 0.22 -2.53 16 19 C -0.12 -2.91 9.83 22.29 0.22 -2.69 16 20 C -0.05 -1.37 6.31 22.32 0.14 -1.23 16 21 Cl -0.07 -1.74 26.68 -2.72 -0.07 -1.81 16 22 C 0.05 1.31 3.16 30.97 0.10 1.41 16 23 H 0.05 1.48 7.53 -2.39 -0.02 1.46 16 24 C -0.15 -2.91 6.11 31.58 0.19 -2.72 16 25 C -0.14 -2.19 7.15 31.89 0.23 -1.96 16 26 C 0.04 0.71 7.72 72.66 0.56 1.27 16 27 O -0.39 -10.38 9.83 -148.98 -1.46 -11.84 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 30 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.05 2.25 7.92 -2.39 -0.02 2.23 16 32 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 33 H 0.34 13.01 8.10 -89.69 -0.73 12.28 16 34 H 0.08 2.10 7.56 -2.39 -0.02 2.08 16 35 H 0.09 2.00 5.87 -2.39 -0.01 1.99 16 36 H 0.13 3.55 8.04 -2.91 -0.02 3.52 16 37 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.61 6.67 -2.39 -0.02 1.60 16 42 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 45 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -67.52 375.86 1.63 -65.89 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.25 Total: 24.55 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 3.52 Total: -38.25 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -2.64 Total: -85.71 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.46 Total: -11.84 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Total: -67.52 1.63 -65.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453195918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.731 kcal (2) G-P(sol) polarization free energy of solvation -67.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds