Wall clock time and date at job start Tue Mar 31 2020 14:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47452 * 240.00320 * 3 2 1 5 5 H 1.48503 * 109.47126 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46949 * 120.00251 * 3 2 1 7 7 C 1.37876 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00290 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47212 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.46809 * 180.02562 * 10 9 7 12 12 C 1.35991 * 116.99738 * 179.97438 * 11 10 9 13 13 C 1.38785 * 120.49414 * 0.22790 * 12 11 10 14 14 C 1.38789 * 118.44552 * 180.28694 * 13 12 11 15 15 C 1.38068 * 119.35883 * 359.72503 * 14 13 12 16 16 N 1.31972 * 120.94876 * 0.02851 * 15 14 13 17 17 C 1.32274 * 121.69229 * 359.97043 * 16 15 14 18 18 N 1.39584 * 119.72865 * 179.97438 * 17 16 15 19 19 C 1.34777 * 119.99729 * 0.28539 * 18 17 16 20 20 O 1.21583 * 120.00270 * 359.71715 * 19 18 17 21 21 N 1.34775 * 119.99585 * 179.71850 * 19 18 17 22 22 C 1.47018 * 125.65107 * 359.69605 * 21 19 18 23 23 C 1.54333 * 107.26888 * 178.84777 * 22 21 19 24 24 C 1.55160 * 103.01852 * 338.13614 * 23 22 21 25 25 H 1.08994 * 111.00274 * 277.23499 * 24 23 22 26 26 F 1.39898 * 111.00375 * 153.38144 * 24 23 22 27 27 C 1.47427 * 125.64545 * 179.97438 * 21 19 18 28 28 H 0.96997 * 119.99965 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46854 * 60.00106 * 9 7 2 30 30 H 1.08999 * 109.47334 * 300.00449 * 9 7 2 31 31 H 1.09000 * 109.46907 * 60.00042 * 10 9 7 32 32 H 1.08999 * 109.47052 * 300.00273 * 10 9 7 33 33 H 1.08003 * 120.78113 * 0.02562 * 13 12 11 34 34 H 1.08000 * 120.32290 * 179.71330 * 14 13 12 35 35 H 1.07992 * 119.52758 * 180.02562 * 15 14 13 36 36 H 0.97001 * 119.99724 * 179.97438 * 18 17 16 37 37 H 1.09003 * 109.88146 * 298.38784 * 22 21 19 38 38 H 1.08996 * 109.88567 * 59.55029 * 22 21 19 39 39 H 1.09001 * 110.84978 * 219.66830 * 23 22 21 40 40 H 1.09004 * 110.66792 * 96.51785 * 23 22 21 41 41 H 1.08994 * 110.37068 * 322.93540 * 27 21 19 42 42 H 1.09006 * 110.36071 * 85.15026 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5308 -4.8996 -0.0011 12 6 2.2714 -6.0401 -0.0018 13 6 3.6579 -5.9795 0.0030 14 6 4.3717 -7.1697 -0.0040 15 6 3.6879 -8.3691 -0.0095 16 7 2.3685 -8.3981 -0.0089 17 6 1.6490 -7.2882 -0.0023 18 7 0.2554 -7.3667 -0.0024 19 6 -0.3518 -8.5700 -0.0034 20 8 0.3144 -9.5870 -0.0093 21 7 -1.6974 -8.6457 0.0023 22 6 -2.6200 -7.5012 0.0160 23 6 -4.0548 -8.0689 -0.0116 24 6 -3.8570 -9.4900 -0.6022 25 1 -3.8093 -9.4575 -1.6907 26 9 -4.8674 -10.3569 -0.1723 27 6 -2.4878 -9.8901 0.0015 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 4.1696 -5.0283 0.0076 34 1 5.4517 -7.1579 -0.0052 35 1 4.2406 -9.2969 -0.0145 36 1 -0.2760 -6.5552 0.0027 37 1 -2.4690 -6.9142 0.9220 38 1 -2.4524 -6.8792 -0.8632 39 1 -4.6970 -7.4692 -0.6566 40 1 -4.4663 -8.1240 0.9963 41 1 -2.0058 -10.6454 -0.6190 42 1 -2.6138 -10.2601 1.0191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455159355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:30 Heat of formation + Delta-G solvation = -65.122232 kcal Electronic energy + Delta-G solvation = -26700.939428 eV Core-core repulsion = 22596.427618 eV Total energy + Delta-G solvation = -4104.511811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.01606 -41.00509 -39.85276 -37.95355 -37.31282 -34.83432 -33.49755 -31.90540 -31.34192 -30.47340 -29.43009 -28.65849 -25.45443 -24.48501 -23.16238 -22.71184 -21.74856 -20.99511 -20.03566 -18.82627 -17.97788 -17.57094 -17.21441 -16.26304 -16.13431 -15.96833 -15.58305 -15.25852 -15.20303 -14.96648 -14.62622 -14.54624 -14.24268 -13.93966 -13.72439 -13.40483 -13.09391 -12.86630 -12.65630 -12.41980 -12.07308 -12.00912 -11.94108 -11.18696 -11.10578 -11.09927 -10.99625 -10.75818 -10.71092 -10.44182 -10.06685 -9.80691 -9.45456 -9.24372 -9.10495 -8.89615 -8.54231 -7.65830 -6.20320 -4.25290 1.24938 1.44969 2.18360 3.10925 3.22173 3.26960 3.27908 3.51305 3.52151 3.86278 4.00448 4.04296 4.16602 4.31861 4.42096 4.62585 4.77581 4.95079 5.03386 5.03742 5.16602 5.19834 5.23182 5.32888 5.40429 5.46841 5.49211 5.66125 5.81804 5.88110 5.90580 6.06742 6.17861 6.34552 6.51950 6.57965 6.76849 7.32394 7.49716 7.55958 7.64051 7.84058 8.11851 8.18615 8.53698 8.79609 9.39735 10.91041 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.003057 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.954033 B = 9156.672791 C =11629.881554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.317 6.317 12 C 0.066 3.934 13 C -0.146 4.146 14 C -0.162 4.162 15 C 0.077 3.923 16 N -0.442 5.442 17 C 0.345 3.655 18 N -0.657 5.657 19 C 0.718 3.282 20 O -0.530 6.530 21 N -0.637 5.637 22 C 0.093 3.907 23 C -0.153 4.153 24 C 0.077 3.923 25 H 0.105 0.895 26 F -0.199 7.199 27 C 0.106 3.894 28 H 0.265 0.735 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.421 0.579 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -16.440 -0.772 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.230 6.230 12 C 0.014 3.986 13 C -0.172 4.172 14 C -0.183 4.183 15 C -0.080 4.080 16 N -0.157 5.157 17 C 0.112 3.888 18 N -0.307 5.307 19 C 0.419 3.581 20 O -0.401 6.401 21 N -0.378 5.378 22 C -0.030 4.030 23 C -0.191 4.191 24 C 0.040 3.960 25 H 0.123 0.877 26 F -0.180 7.180 27 C -0.018 4.018 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.174 0.826 36 H 0.258 0.742 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.674 -17.872 -0.771 18.262 hybrid contribution 0.763 2.366 0.070 2.487 sum -2.911 -15.507 -0.701 15.793 Atomic orbital electron populations 1.69950 1.06097 1.27201 1.49449 1.24973 0.94919 0.99394 0.94760 0.86542 0.79527 0.82525 0.78772 1.20057 1.21076 1.20063 1.20912 0.93044 0.90144 1.52635 0.92383 1.19116 0.94118 0.88909 0.98822 1.23394 0.97255 0.80288 0.99861 1.86096 1.36269 1.12915 1.87709 1.19523 0.91129 0.86917 1.01034 1.21593 0.92109 1.00380 1.03160 1.21891 1.01209 0.92516 1.02695 1.22416 0.88723 0.97908 0.98904 1.67620 1.07819 1.26797 1.13482 1.17467 0.83713 0.86984 1.00666 1.42448 1.04081 1.08745 1.75434 1.15352 0.80053 0.83997 0.78653 1.91042 1.61830 1.33164 1.54026 1.47386 1.03375 1.07761 1.79302 1.22098 0.88290 0.89446 1.03161 1.23211 0.96654 0.95456 1.03746 1.22678 0.84916 0.88355 1.00094 0.87718 1.92835 1.61697 1.71627 1.91818 1.22498 0.89610 0.87273 1.02408 0.92585 0.95385 0.95396 0.92926 0.92930 0.83688 0.84758 0.82597 0.74175 0.90310 0.90425 0.88462 0.88971 0.89032 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.29 55.43 0.74 -24.45 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -13.95 9.11 -34.44 -0.31 -14.26 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.52 16 10 C 0.07 1.28 4.70 37.16 0.17 1.45 16 11 O -0.32 -5.76 9.39 -19.71 -0.19 -5.94 16 12 C 0.07 1.09 6.72 -38.92 -0.26 0.83 16 13 C -0.15 -2.10 9.14 -39.18 -0.36 -2.46 16 14 C -0.16 -2.00 10.10 -39.44 -0.40 -2.40 16 15 C 0.08 1.05 11.17 -17.55 -0.20 0.86 16 16 N -0.44 -7.54 7.87 -12.23 -0.10 -7.64 16 17 C 0.35 5.81 7.45 -154.43 -1.15 4.66 16 18 N -0.66 -9.97 5.35 -15.67 -0.08 -10.06 16 19 C 0.72 11.00 8.45 -86.92 -0.73 10.27 16 20 O -0.53 -9.90 14.85 5.29 0.08 -9.82 16 21 N -0.64 -7.29 3.33 -176.24 -0.59 -7.88 16 22 C 0.09 0.79 6.15 -3.06 -0.02 0.77 16 23 C -0.15 -1.00 6.76 -24.89 -0.17 -1.17 16 24 C 0.08 0.58 4.86 -24.59 -0.12 0.46 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 26 F -0.20 -1.83 17.24 2.25 0.04 -1.79 16 27 C 0.11 1.02 6.71 -2.54 -0.02 1.01 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 32 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 33 H 0.15 1.92 6.44 -52.48 -0.34 1.59 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.42 5.70 7.03 -40.82 -0.29 5.42 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.93 8.04 -51.93 -0.42 0.51 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -32.76 358.51 -9.13 -41.90 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.61 Total: 2.76 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -3.81 Total: 2.10 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.03 Total: -50.02 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.11 Total: -15.76 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.76 -9.13 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455159355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.225 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds