Wall clock time and date at job start Tue Mar 31 2020 14:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47452 * 240.00320 * 3 2 1 5 5 H 1.48503 * 109.47126 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46949 * 120.00251 * 3 2 1 7 7 C 1.37876 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00290 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47212 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.46809 * 180.02562 * 10 9 7 12 12 C 1.35991 * 116.99738 * 179.97438 * 11 10 9 13 13 C 1.38785 * 120.49414 * 0.22790 * 12 11 10 14 14 C 1.38789 * 118.44552 * 180.28694 * 13 12 11 15 15 C 1.38068 * 119.35883 * 359.72503 * 14 13 12 16 16 N 1.31972 * 120.94876 * 0.02851 * 15 14 13 17 17 C 1.32274 * 121.69229 * 359.97043 * 16 15 14 18 18 N 1.39584 * 119.72865 * 179.97438 * 17 16 15 19 19 C 1.34777 * 119.99729 * 0.28539 * 18 17 16 20 20 O 1.21583 * 120.00270 * 359.71715 * 19 18 17 21 21 N 1.34775 * 119.99585 * 179.71850 * 19 18 17 22 22 C 1.47018 * 125.65107 * 359.69605 * 21 19 18 23 23 C 1.54333 * 107.26888 * 178.84777 * 22 21 19 24 24 C 1.55160 * 103.01852 * 338.13614 * 23 22 21 25 25 H 1.08994 * 111.00274 * 277.23499 * 24 23 22 26 26 F 1.39898 * 111.00375 * 153.38144 * 24 23 22 27 27 C 1.47427 * 125.64545 * 179.97438 * 21 19 18 28 28 H 0.96997 * 119.99965 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46854 * 60.00106 * 9 7 2 30 30 H 1.08999 * 109.47334 * 300.00449 * 9 7 2 31 31 H 1.09000 * 109.46907 * 60.00042 * 10 9 7 32 32 H 1.08999 * 109.47052 * 300.00273 * 10 9 7 33 33 H 1.08003 * 120.78113 * 0.02562 * 13 12 11 34 34 H 1.08000 * 120.32290 * 179.71330 * 14 13 12 35 35 H 1.07992 * 119.52758 * 180.02562 * 15 14 13 36 36 H 0.97001 * 119.99724 * 179.97438 * 18 17 16 37 37 H 1.09003 * 109.88146 * 298.38784 * 22 21 19 38 38 H 1.08996 * 109.88567 * 59.55029 * 22 21 19 39 39 H 1.09001 * 110.84978 * 219.66830 * 23 22 21 40 40 H 1.09004 * 110.66792 * 96.51785 * 23 22 21 41 41 H 1.08994 * 110.37068 * 322.93540 * 27 21 19 42 42 H 1.09006 * 110.36071 * 85.15026 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5308 -4.8996 -0.0011 12 6 2.2714 -6.0401 -0.0018 13 6 3.6579 -5.9795 0.0030 14 6 4.3717 -7.1697 -0.0040 15 6 3.6879 -8.3691 -0.0095 16 7 2.3685 -8.3981 -0.0089 17 6 1.6490 -7.2882 -0.0023 18 7 0.2554 -7.3667 -0.0024 19 6 -0.3518 -8.5700 -0.0034 20 8 0.3144 -9.5870 -0.0093 21 7 -1.6974 -8.6457 0.0023 22 6 -2.6200 -7.5012 0.0160 23 6 -4.0548 -8.0689 -0.0116 24 6 -3.8570 -9.4900 -0.6022 25 1 -3.8093 -9.4575 -1.6907 26 9 -4.8674 -10.3569 -0.1723 27 6 -2.4878 -9.8901 0.0015 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 4.1696 -5.0283 0.0076 34 1 5.4517 -7.1579 -0.0052 35 1 4.2406 -9.2969 -0.0145 36 1 -0.2760 -6.5552 0.0027 37 1 -2.4690 -6.9142 0.9220 38 1 -2.4524 -6.8792 -0.8632 39 1 -4.6970 -7.4692 -0.6566 40 1 -4.4663 -8.1240 0.9963 41 1 -2.0058 -10.6454 -0.6190 42 1 -2.6138 -10.2601 1.0191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455159355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:30 Heat of formation + Delta-G solvation = -84.816248 kcal Electronic energy + Delta-G solvation = -26701.793425 eV Core-core repulsion = 22596.427618 eV Total energy + Delta-G solvation = -4105.365807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.70812 -42.15577 -40.94949 -39.22572 -38.29744 -36.03625 -35.43683 -32.98543 -32.60950 -31.89314 -30.45331 -29.62811 -27.15735 -25.56980 -24.44547 -23.79525 -22.67584 -22.36304 -21.12106 -19.94172 -19.23000 -18.66910 -18.13940 -17.97091 -17.39236 -17.19410 -16.69147 -16.52849 -16.26505 -16.12149 -15.73234 -15.55718 -15.18177 -15.17641 -14.71350 -14.36984 -14.30820 -14.13144 -14.01999 -13.61981 -13.39088 -13.28091 -12.80908 -12.73246 -12.71807 -12.44478 -11.92923 -11.83389 -11.73612 -11.70556 -11.66725 -11.59099 -11.41262 -10.58903 -10.42688 -10.27770 -9.85792 -8.84369 -8.24550 -6.36813 0.12911 0.29843 1.17162 1.43557 1.45799 1.53562 1.96488 2.11340 2.45170 2.55701 2.89396 3.10763 3.13929 3.35814 3.50043 3.55988 3.84929 3.86519 3.92367 4.11283 4.13018 4.30940 4.34716 4.35258 4.47051 4.49090 4.61901 4.75836 4.77900 4.81261 4.94703 5.01230 5.11777 5.18726 5.25128 5.32362 5.51990 5.52905 5.68861 5.76492 6.09265 6.34185 6.52089 6.77653 7.05234 7.33095 7.40163 8.87706 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.003057 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.954033 B = 9156.672791 C =11629.881554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.070 0.930 9 C 0.031 3.969 10 C 0.083 3.917 11 O -0.329 6.329 12 C 0.042 3.958 13 C -0.146 4.146 14 C -0.145 4.145 15 C 0.075 3.925 16 N -0.474 5.474 17 C 0.326 3.674 18 N -0.657 5.657 19 C 0.713 3.287 20 O -0.571 6.571 21 N -0.634 5.634 22 C 0.087 3.913 23 C -0.142 4.142 24 C 0.085 3.915 25 H 0.123 0.877 26 F -0.206 7.206 27 C 0.101 3.899 28 H 0.266 0.734 29 H 0.002 0.998 30 H 0.002 0.998 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.159 0.841 34 H 0.177 0.823 35 H 0.186 0.814 36 H 0.424 0.576 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 -16.108 -0.993 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.088 0.912 9 C -0.006 4.006 10 C 0.009 3.991 11 O -0.243 6.243 12 C -0.009 4.009 13 C -0.172 4.172 14 C -0.166 4.166 15 C -0.082 4.082 16 N -0.189 5.189 17 C 0.093 3.907 18 N -0.307 5.307 19 C 0.415 3.585 20 O -0.445 6.445 21 N -0.373 5.373 22 C -0.035 4.035 23 C -0.180 4.180 24 C 0.048 3.952 25 H 0.140 0.860 26 F -0.187 7.187 27 C -0.023 4.023 28 H 0.075 0.925 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.176 0.824 34 H 0.194 0.806 35 H 0.203 0.797 36 H 0.262 0.738 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.247 -17.540 -0.991 17.711 hybrid contribution 0.344 2.142 0.151 2.175 sum -1.903 -15.398 -0.840 15.538 Atomic orbital electron populations 1.70085 1.07823 1.28152 1.50625 1.25929 0.95758 1.03325 0.94327 0.85443 0.78209 0.77755 0.79317 1.18995 1.21047 1.19034 1.21375 0.93867 0.91092 1.52021 0.91152 1.18932 0.94494 0.90892 0.96300 1.22966 0.95655 0.79576 1.00920 1.86024 1.36651 1.13020 1.88598 1.19654 0.92143 0.85961 1.03166 1.21902 0.91253 1.01902 1.02165 1.22285 1.03118 0.90991 1.00174 1.23061 0.87946 0.99855 0.97324 1.67665 1.09530 1.27178 1.14570 1.17660 0.84307 0.87185 1.01510 1.42452 1.03988 1.08897 1.75347 1.15523 0.81060 0.83464 0.78487 1.90992 1.63181 1.34256 1.56077 1.47407 1.02552 1.09473 1.77892 1.22318 0.88823 0.88749 1.03596 1.23211 0.95439 0.94821 1.04550 1.22689 0.83211 0.88426 1.00879 0.85974 1.92823 1.61850 1.72035 1.92006 1.22625 0.90635 0.86561 1.02482 0.92535 0.97931 0.97992 0.91786 0.91758 0.82356 0.80565 0.79705 0.73752 0.90197 0.89743 0.86211 0.88537 0.89886 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.40 13.29 21.45 0.28 -53.12 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 41.40 29.54 68.60 2.03 43.43 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.55 -28.70 9.11 25.60 0.23 -28.47 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.54 5.34 29.85 0.16 1.70 16 10 C 0.08 3.19 4.70 71.98 0.34 3.53 16 11 O -0.33 -12.09 9.39 -93.45 -0.88 -12.97 16 12 C 0.04 1.37 6.72 22.70 0.15 1.52 16 13 C -0.15 -3.90 9.14 22.53 0.21 -3.69 16 14 C -0.14 -3.13 10.10 22.36 0.23 -2.91 16 15 C 0.07 1.90 11.17 84.63 0.95 2.85 16 16 N -0.47 -16.07 7.87 -192.59 -1.52 -17.59 16 17 C 0.33 11.10 7.45 132.98 0.99 12.09 16 18 N -0.66 -20.63 5.35 -321.77 -1.72 -22.35 16 19 C 0.71 22.61 8.45 179.05 1.51 24.12 16 20 O -0.57 -22.10 14.85 -3.98 -0.06 -22.16 16 21 N -0.63 -14.76 3.33 -829.78 -2.76 -17.52 16 22 C 0.09 1.44 6.15 86.73 0.53 1.97 16 23 C -0.14 -1.65 6.76 31.79 0.21 -1.44 16 24 C 0.08 1.18 4.86 31.98 0.16 1.33 16 25 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 26 F -0.21 -3.55 17.24 44.97 0.78 -2.78 16 27 C 0.10 1.95 6.71 86.85 0.58 2.54 16 28 H 0.27 14.42 8.31 -92.71 -0.77 13.64 16 29 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.06 2.29 7.69 -2.39 -0.02 2.27 16 32 H 0.06 2.30 7.71 -2.39 -0.02 2.28 16 33 H 0.16 3.76 6.44 -2.91 -0.02 3.74 16 34 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.42 12.05 7.03 -92.71 -0.65 11.40 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.08 1.75 8.04 -2.39 -0.02 1.73 16 42 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -72.38 358.51 3.27 -69.11 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.40 Total: 20.04 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 6.71 Total: 15.90 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -5.71 Total: -110.57 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.94 Total: -35.13 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -72.38 3.27 -69.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455159355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.702 kcal (2) G-P(sol) polarization free energy of solvation -72.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds