Wall clock time and date at job start Tue Mar 31 2020 15:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46843 * 234.90460 * 3 2 1 5 5 C 1.36973 * 119.99917 * 86.12927 * 4 3 2 6 6 H 1.08005 * 120.00032 * 318.60064 * 5 4 3 7 7 C 1.38981 * 120.00154 * 138.33367 * 5 4 3 8 8 N 1.31411 * 120.00198 * 156.48901 * 7 5 4 9 9 Si 1.86799 * 119.99882 * 336.49240 * 7 5 4 10 10 H 1.48496 * 109.47441 * 94.50949 * 9 7 5 11 11 H 1.48503 * 109.47188 * 214.51058 * 9 7 5 12 12 H 1.48501 * 109.47161 * 334.50692 * 9 7 5 13 13 C 1.34780 * 119.99842 * 266.12644 * 4 3 2 14 14 O 1.21640 * 119.99593 * 180.02562 * 13 4 3 15 15 C 1.47332 * 120.00514 * 0.02562 * 13 4 3 16 16 C 1.41369 * 126.41803 * 270.03111 * 15 13 4 17 17 C 1.50700 * 125.96320 * 359.97159 * 16 15 13 18 18 N 1.30462 * 108.07424 * 179.97438 * 16 15 13 19 19 N 1.39934 * 108.93243 * 359.97438 * 18 16 15 20 20 C 1.40146 * 125.77081 * 179.97438 * 19 18 16 21 21 C 1.38851 * 120.06829 * 41.35009 * 20 19 18 22 22 C 1.38114 * 119.92834 * 179.74831 * 21 20 19 23 23 C 1.38281 * 120.07116 * 0.55418 * 22 21 20 24 24 C 1.38281 * 120.13530 * 359.70179 * 23 22 21 25 25 C 1.38114 * 120.06447 * 0.02562 * 24 23 22 26 26 C 1.34566 * 108.46159 * 359.72871 * 19 18 16 27 27 C 1.50706 * 126.31614 * 180.29547 * 26 19 18 28 28 H 4.40635 * 5.51435 * 179.97438 * 4 1 2 29 29 H 1.09008 * 109.46781 * 114.90848 * 3 2 1 30 30 H 1.08994 * 109.47270 * 354.90773 * 3 2 1 31 31 H 0.97001 * 120.00220 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.47368 * 90.00187 * 17 16 15 33 33 H 1.08993 * 109.47315 * 210.00596 * 17 16 15 34 34 H 1.09009 * 109.47048 * 330.00072 * 17 16 15 35 35 H 1.07991 * 120.02970 * 0.02562 * 21 20 19 36 36 H 1.08007 * 119.96346 * 180.27929 * 22 21 20 37 37 H 1.08004 * 119.93175 * 179.71933 * 23 22 21 38 38 H 1.07996 * 119.96872 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.02876 * 180.02562 * 25 24 23 40 40 H 1.09001 * 109.46441 * 275.69756 * 27 26 19 41 41 H 1.08999 * 109.47177 * 35.69984 * 27 26 19 42 42 H 1.09000 * 109.46753 * 155.70233 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7950 1.1301 5 6 3.2869 0.2133 2.3607 6 1 2.5408 -0.4752 2.7291 7 6 4.4051 0.5047 3.1329 8 7 4.3611 0.3508 4.4372 9 14 5.9705 1.1153 2.3167 10 1 5.9940 2.5999 2.3395 11 1 7.1492 0.5903 3.0517 12 1 6.0128 0.6410 0.9101 13 6 3.4323 2.0981 0.9589 14 8 3.8378 2.7575 1.8971 15 6 3.2672 2.7240 -0.3647 16 6 4.2431 2.8001 -1.3846 17 6 5.6452 2.2527 -1.3106 18 7 3.7181 3.4269 -2.4012 19 7 2.4002 3.7771 -2.0873 20 6 1.5123 4.4626 -2.9275 21 6 1.4528 4.1508 -4.2793 22 6 0.5730 4.8245 -5.1037 23 6 -0.2398 5.8165 -4.5865 24 6 -0.1790 6.1329 -3.2418 25 6 0.6946 5.4589 -2.4112 26 6 2.1276 3.3398 -0.8442 27 6 0.8212 3.4964 -0.1093 28 1 -1.0501 0.0000 -0.0003 29 1 3.0091 0.4337 -0.9322 30 1 3.0098 -1.0227 0.0912 31 1 5.1417 0.5538 4.9762 32 1 5.6540 1.2254 -1.6746 33 1 6.3062 2.8622 -1.9267 34 1 5.9897 2.2748 -0.2766 35 1 2.0905 3.3793 -4.6846 36 1 0.5230 4.5793 -6.1544 37 1 -0.9237 6.3450 -5.2342 38 1 -0.8154 6.9078 -2.8406 39 1 0.7413 5.7062 -1.3609 40 1 0.7900 4.4741 0.3717 41 1 -0.0051 3.4121 -0.8151 42 1 0.7341 2.7164 0.6470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490960531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:54 Heat of formation + Delta-G solvation = 148.431904 kcal Electronic energy + Delta-G solvation = -27408.814430 eV Core-core repulsion = 23744.332246 eV Total energy + Delta-G solvation = -3664.482184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56852 -39.28751 -38.38515 -34.97943 -34.20542 -32.75268 -32.07576 -31.52449 -31.12490 -30.26824 -27.74253 -27.16941 -26.66993 -24.59734 -23.00976 -22.67932 -21.07775 -19.56909 -19.20560 -18.05338 -17.72197 -16.91091 -16.39220 -15.84582 -15.60790 -15.15108 -14.77843 -14.53782 -14.17472 -13.81157 -13.76242 -13.62364 -13.33568 -13.10060 -13.02535 -12.86263 -12.61285 -12.52592 -12.28671 -12.08665 -11.96235 -11.92645 -11.64763 -11.36844 -10.90047 -10.60103 -10.33021 -9.97777 -9.84674 -9.76579 -9.65882 -9.28164 -8.75764 -8.60931 -8.55819 -7.97539 -7.72656 -6.22944 -3.95653 0.76066 1.05903 2.02783 2.40792 2.74540 3.19411 3.28607 3.33733 3.42699 3.45389 3.63191 3.76858 4.48746 4.55084 4.61128 4.64134 4.69727 4.80568 4.84983 4.96997 5.06274 5.08179 5.22294 5.25129 5.43145 5.51924 5.58844 5.68958 5.72599 5.80632 5.91360 5.95615 6.03004 6.04510 6.12879 6.14894 6.18481 6.21255 6.28584 6.41520 6.51795 6.76409 7.24739 7.80049 7.82629 7.97836 8.09394 8.76088 8.89357 9.40812 9.81499 10.83137 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.004385 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.926525 B = 6383.259726 C = 6921.702358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.167 4.167 3 C 0.205 3.795 4 N -0.448 5.448 5 C -0.356 4.356 6 H 0.095 0.905 7 C 0.100 3.900 8 N -0.857 5.857 9 Si 0.889 3.111 10 H -0.253 1.253 11 H -0.303 1.303 12 H -0.267 1.267 13 C 0.528 3.472 14 O -0.533 6.533 15 C -0.243 4.243 16 C 0.112 3.888 17 C -0.082 4.082 18 N -0.297 5.297 19 N -0.325 5.325 20 C 0.161 3.839 21 C -0.109 4.109 22 C -0.104 4.104 23 C -0.125 4.125 24 C -0.100 4.100 25 C -0.128 4.128 26 C 0.122 3.878 27 C -0.094 4.094 28 H 0.210 0.790 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.273 0.727 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 6.861 -18.111 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.168 4.168 3 C 0.082 3.918 4 N -0.169 5.169 5 C -0.481 4.481 6 H 0.112 0.888 7 C -0.110 4.110 8 N -0.491 5.491 9 Si 0.718 3.282 10 H -0.178 1.178 11 H -0.232 1.232 12 H -0.192 1.192 13 C 0.316 3.684 14 O -0.413 6.413 15 C -0.257 4.257 16 C -0.056 4.056 17 C -0.140 4.140 18 N -0.116 5.116 19 N -0.101 5.101 20 C 0.070 3.930 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.144 4.144 24 C -0.119 4.119 25 C -0.148 4.148 26 C -0.003 4.003 27 C -0.152 4.152 28 H 0.227 0.773 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.784 7.643 -18.624 21.584 hybrid contribution 0.391 -0.055 0.486 0.626 sum -7.394 7.589 -18.138 21.006 Atomic orbital electron populations 1.24665 0.95644 1.02430 1.01961 1.23920 0.95117 0.98849 0.98961 1.18553 0.83634 0.98222 0.91390 1.43505 1.58539 1.06116 1.08696 1.18746 1.07953 1.30312 0.91121 0.88754 1.25235 0.98538 0.92792 0.94468 1.69789 1.30335 1.44395 1.04535 0.86813 0.80916 0.81018 0.79433 1.17818 1.23184 1.19173 1.17248 0.83355 0.81874 0.85883 1.90668 1.47390 1.61943 1.41342 1.20347 0.93858 1.12800 0.98664 1.22465 0.96892 0.95934 0.90281 1.20448 0.88613 1.00884 1.04093 1.77126 0.89671 1.21650 1.23167 1.45319 1.09605 1.44228 1.10936 1.17454 0.91718 0.93771 0.90062 1.21065 0.99364 1.00687 0.91818 1.21061 0.95421 0.95917 0.99830 1.21237 0.99618 0.98028 0.95469 1.21007 0.98098 0.99340 0.93467 1.21178 0.97576 0.94788 1.01255 1.21392 0.96964 0.96670 0.85303 1.20614 0.90443 1.04330 0.99835 0.77269 0.90056 0.88345 0.91737 0.89853 0.90468 0.90014 0.84993 0.85196 0.85499 0.85056 0.85037 0.90001 0.90807 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.66 19.20 29.55 0.57 -3.09 16 2 C -0.17 -3.09 13.33 -37.12 -0.49 -3.58 16 3 C 0.21 4.03 5.75 -6.83 -0.04 3.99 16 4 N -0.45 -10.83 2.12 -119.18 -0.25 -11.09 16 5 C -0.36 -9.97 9.65 -14.98 -0.14 -10.12 16 6 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 7 C 0.10 2.91 4.72 -17.46 -0.08 2.83 16 8 N -0.86 -26.01 13.96 55.50 0.77 -25.23 16 9 Si 0.89 23.11 23.49 -169.99 -3.99 19.11 16 10 H -0.25 -6.98 6.34 56.52 0.36 -6.63 16 11 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 12 H -0.27 -6.26 6.18 56.52 0.35 -5.91 16 13 C 0.53 13.01 5.03 -12.56 -0.06 12.95 16 14 O -0.53 -15.33 12.81 5.24 0.07 -15.26 16 15 C -0.24 -5.06 4.05 -105.05 -0.43 -5.49 16 16 C 0.11 2.14 6.96 -81.98 -0.57 1.57 16 17 C -0.08 -1.38 10.14 36.01 0.37 -1.01 16 18 N -0.30 -5.38 12.32 33.91 0.42 -4.96 16 19 N -0.33 -5.48 3.67 -6.49 -0.02 -5.51 16 20 C 0.16 2.22 6.11 -83.60 -0.51 1.71 16 21 C -0.11 -1.30 9.83 -39.40 -0.39 -1.69 16 22 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 23 C -0.13 -1.01 10.04 -39.55 -0.40 -1.41 16 24 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 25 C -0.13 -1.47 8.55 -39.40 -0.34 -1.81 16 26 C 0.12 2.21 6.82 -81.43 -0.56 1.65 16 27 C -0.09 -1.44 8.62 36.01 0.31 -1.13 16 28 H 0.21 2.49 7.80 -54.08 -0.42 2.07 16 29 H 0.08 1.48 6.50 -51.92 -0.34 1.14 16 30 H 0.10 1.80 8.07 -51.93 -0.42 1.38 16 31 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.57 5.28 -51.92 -0.27 1.30 16 35 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 37 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 1.48 6.56 -52.49 -0.34 1.14 16 40 H 0.08 1.13 7.55 -51.93 -0.39 0.74 16 41 H 0.07 0.94 7.54 -51.93 -0.39 0.55 16 42 H 0.09 1.66 7.45 -51.93 -0.39 1.28 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -35.20 358.52 -6.33 -41.53 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.16 Total: 3.26 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.56 Total: -7.26 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.92 Total: -46.79 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.07 Total: -15.26 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -3.99 Total: 19.11 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.20 -6.33 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.961 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds