Wall clock time and date at job start Tue Mar 31 2020 15:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46843 * 234.90460 * 3 2 1 5 5 C 1.36973 * 119.99917 * 86.12927 * 4 3 2 6 6 H 1.08005 * 120.00032 * 318.60064 * 5 4 3 7 7 C 1.38981 * 120.00154 * 138.33367 * 5 4 3 8 8 N 1.31411 * 120.00198 * 156.48901 * 7 5 4 9 9 Si 1.86799 * 119.99882 * 336.49240 * 7 5 4 10 10 H 1.48496 * 109.47441 * 94.50949 * 9 7 5 11 11 H 1.48503 * 109.47188 * 214.51058 * 9 7 5 12 12 H 1.48501 * 109.47161 * 334.50692 * 9 7 5 13 13 C 1.34780 * 119.99842 * 266.12644 * 4 3 2 14 14 O 1.21640 * 119.99593 * 180.02562 * 13 4 3 15 15 C 1.47332 * 120.00514 * 0.02562 * 13 4 3 16 16 C 1.41369 * 126.41803 * 270.03111 * 15 13 4 17 17 C 1.50700 * 125.96320 * 359.97159 * 16 15 13 18 18 N 1.30462 * 108.07424 * 179.97438 * 16 15 13 19 19 N 1.39934 * 108.93243 * 359.97438 * 18 16 15 20 20 C 1.40146 * 125.77081 * 179.97438 * 19 18 16 21 21 C 1.38851 * 120.06829 * 41.35009 * 20 19 18 22 22 C 1.38114 * 119.92834 * 179.74831 * 21 20 19 23 23 C 1.38281 * 120.07116 * 0.55418 * 22 21 20 24 24 C 1.38281 * 120.13530 * 359.70179 * 23 22 21 25 25 C 1.38114 * 120.06447 * 0.02562 * 24 23 22 26 26 C 1.34566 * 108.46159 * 359.72871 * 19 18 16 27 27 C 1.50706 * 126.31614 * 180.29547 * 26 19 18 28 28 H 4.40635 * 5.51435 * 179.97438 * 4 1 2 29 29 H 1.09008 * 109.46781 * 114.90848 * 3 2 1 30 30 H 1.08994 * 109.47270 * 354.90773 * 3 2 1 31 31 H 0.97001 * 120.00220 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.47368 * 90.00187 * 17 16 15 33 33 H 1.08993 * 109.47315 * 210.00596 * 17 16 15 34 34 H 1.09009 * 109.47048 * 330.00072 * 17 16 15 35 35 H 1.07991 * 120.02970 * 0.02562 * 21 20 19 36 36 H 1.08007 * 119.96346 * 180.27929 * 22 21 20 37 37 H 1.08004 * 119.93175 * 179.71933 * 23 22 21 38 38 H 1.07996 * 119.96872 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.02876 * 180.02562 * 25 24 23 40 40 H 1.09001 * 109.46441 * 275.69756 * 27 26 19 41 41 H 1.08999 * 109.47177 * 35.69984 * 27 26 19 42 42 H 1.09000 * 109.46753 * 155.70233 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7950 1.1301 5 6 3.2869 0.2133 2.3607 6 1 2.5408 -0.4752 2.7291 7 6 4.4051 0.5047 3.1329 8 7 4.3611 0.3508 4.4372 9 14 5.9705 1.1153 2.3167 10 1 5.9940 2.5999 2.3395 11 1 7.1492 0.5903 3.0517 12 1 6.0128 0.6410 0.9101 13 6 3.4323 2.0981 0.9589 14 8 3.8378 2.7575 1.8971 15 6 3.2672 2.7240 -0.3647 16 6 4.2431 2.8001 -1.3846 17 6 5.6452 2.2527 -1.3106 18 7 3.7181 3.4269 -2.4012 19 7 2.4002 3.7771 -2.0873 20 6 1.5123 4.4626 -2.9275 21 6 1.4528 4.1508 -4.2793 22 6 0.5730 4.8245 -5.1037 23 6 -0.2398 5.8165 -4.5865 24 6 -0.1790 6.1329 -3.2418 25 6 0.6946 5.4589 -2.4112 26 6 2.1276 3.3398 -0.8442 27 6 0.8212 3.4964 -0.1093 28 1 -1.0501 0.0000 -0.0003 29 1 3.0091 0.4337 -0.9322 30 1 3.0098 -1.0227 0.0912 31 1 5.1417 0.5538 4.9762 32 1 5.6540 1.2254 -1.6746 33 1 6.3062 2.8622 -1.9267 34 1 5.9897 2.2748 -0.2766 35 1 2.0905 3.3793 -4.6846 36 1 0.5230 4.5793 -6.1544 37 1 -0.9237 6.3450 -5.2342 38 1 -0.8154 6.9078 -2.8406 39 1 0.7413 5.7062 -1.3609 40 1 0.7900 4.4741 0.3717 41 1 -0.0051 3.4121 -0.8151 42 1 0.7341 2.7164 0.6470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490960531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:53 Heat of formation + Delta-G solvation = 126.561282 kcal Electronic energy + Delta-G solvation = -27409.762811 eV Core-core repulsion = 23744.332246 eV Total energy + Delta-G solvation = -3665.430565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.90630 -40.61055 -39.78927 -36.83257 -35.40097 -34.65090 -33.35094 -33.24846 -31.95382 -31.38308 -29.21099 -28.44063 -28.25257 -26.39338 -24.06807 -23.65018 -22.56455 -20.91574 -20.76421 -19.67142 -19.05785 -18.35489 -17.57607 -17.26726 -17.11606 -16.72126 -16.15160 -15.76480 -15.53983 -15.31916 -15.04428 -14.77083 -14.71559 -14.59844 -14.36033 -14.28619 -14.10284 -13.88834 -13.81707 -13.63157 -13.34418 -13.16270 -12.90380 -12.55227 -12.46970 -12.21970 -11.96487 -11.81455 -11.39620 -11.09198 -10.87027 -10.75690 -10.58578 -10.03675 -9.92379 -9.78725 -9.24510 -8.46326 -6.18411 -0.18366 0.31162 0.81116 1.19209 1.20904 1.29036 1.36911 1.49692 1.71245 1.90958 1.98278 2.43713 2.65645 2.81955 3.13069 3.39753 3.43971 3.64236 3.75510 3.88019 3.92435 4.10330 4.18843 4.21791 4.39906 4.40894 4.41174 4.42341 4.54990 4.55600 4.61956 4.68044 4.73796 4.86048 4.91212 4.99691 5.13050 5.23475 5.34746 5.41779 5.48251 5.67739 5.75094 5.83477 6.11137 6.44372 6.67929 6.77138 6.84058 7.27706 7.82981 8.63193 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.004385 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.926525 B = 6383.259726 C = 6921.702358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.225 4.225 3 C 0.209 3.791 4 N -0.454 5.454 5 C -0.353 4.353 6 H 0.069 0.931 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.935 3.065 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.233 1.233 13 C 0.539 3.461 14 O -0.585 6.585 15 C -0.283 4.283 16 C 0.103 3.897 17 C -0.083 4.083 18 N -0.302 5.302 19 N -0.314 5.314 20 C 0.116 3.884 21 C -0.120 4.120 22 C -0.100 4.100 23 C -0.110 4.110 24 C -0.096 4.096 25 C -0.135 4.135 26 C 0.133 3.867 27 C -0.089 4.089 28 H 0.252 0.748 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.274 0.726 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.123 0.877 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.129 0.871 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.727 8.289 -22.083 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.226 4.226 3 C 0.087 3.913 4 N -0.175 5.175 5 C -0.479 4.479 6 H 0.087 0.913 7 C -0.151 4.151 8 N -0.536 5.536 9 Si 0.762 3.238 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.156 1.156 13 C 0.328 3.672 14 O -0.469 6.469 15 C -0.297 4.297 16 C -0.064 4.064 17 C -0.141 4.141 18 N -0.122 5.122 19 N -0.088 5.088 20 C 0.027 3.973 21 C -0.140 4.140 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.114 4.114 25 C -0.155 4.155 26 C 0.005 3.995 27 C -0.147 4.147 28 H 0.268 0.732 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.179 0.821 39 H 0.147 0.853 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.275 9.040 -22.672 26.482 hybrid contribution 0.846 -0.355 1.545 1.797 sum -9.429 8.685 -21.127 24.712 Atomic orbital electron populations 1.25596 0.96433 0.99522 0.98898 1.23863 0.95435 1.01547 1.01730 1.18561 0.84921 0.97846 0.89992 1.43586 1.58515 1.06610 1.08743 1.18619 1.06973 1.29385 0.92953 0.91344 1.25879 1.01129 0.93259 0.94791 1.69868 1.31151 1.46924 1.05695 0.86079 0.78299 0.78700 0.80726 1.20856 1.22512 1.15612 1.17695 0.81188 0.81563 0.86722 1.90621 1.49534 1.63156 1.43614 1.20021 0.96190 1.15819 0.97714 1.22666 0.97455 0.96352 0.89917 1.20507 0.88112 1.02600 1.02920 1.77064 0.90597 1.21600 1.22940 1.45509 1.09392 1.43205 1.10700 1.17889 0.93000 0.95766 0.90667 1.21158 1.00238 1.01196 0.91388 1.21425 0.94231 0.95306 1.00863 1.21725 0.98756 0.96771 0.95525 1.21402 0.97274 0.99129 0.93644 1.21314 0.97834 0.94717 1.01681 1.21627 0.96993 0.95081 0.85797 1.20656 0.90220 1.04155 0.99688 0.73194 0.88760 0.87686 0.91666 0.87954 0.87952 0.92683 0.85926 0.82368 0.81830 0.82091 0.85345 0.88583 0.87824 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.54 19.20 74.32 1.43 -4.11 16 2 C -0.22 -8.15 13.33 31.13 0.41 -7.74 16 3 C 0.21 8.26 5.75 84.58 0.49 8.75 16 4 N -0.45 -22.59 2.12 -649.21 -1.38 -23.96 16 5 C -0.35 -20.60 9.65 84.07 0.81 -19.79 16 6 H 0.07 4.25 8.06 -2.91 -0.02 4.23 16 7 C 0.06 3.35 4.72 84.93 0.40 3.75 16 8 N -0.90 -57.20 13.96 21.67 0.30 -56.90 16 9 Si 0.93 49.48 23.49 68.60 1.61 51.10 16 10 H -0.28 -16.20 6.34 99.48 0.63 -15.57 16 11 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 12 H -0.23 -10.82 6.18 99.48 0.61 -10.21 16 13 C 0.54 27.31 5.03 86.64 0.44 27.74 16 14 O -0.59 -35.19 12.81 -4.16 -0.05 -35.24 16 15 C -0.28 -11.95 4.05 -20.14 -0.08 -12.03 16 16 C 0.10 3.93 6.96 43.53 0.30 4.23 16 17 C -0.08 -2.76 10.14 71.24 0.72 -2.03 16 18 N -0.30 -10.76 12.32 -46.62 -0.57 -11.33 16 19 N -0.31 -10.26 3.67 -174.44 -0.64 -10.90 16 20 C 0.12 2.98 6.11 38.10 0.23 3.21 16 21 C -0.12 -2.56 9.83 22.39 0.22 -2.34 16 22 C -0.10 -1.37 10.04 22.25 0.22 -1.15 16 23 C -0.11 -1.19 10.04 22.29 0.22 -0.96 16 24 C -0.10 -1.27 10.04 22.25 0.22 -1.05 16 25 C -0.14 -2.75 8.55 22.39 0.19 -2.56 16 26 C 0.13 4.75 6.82 42.11 0.29 5.04 16 27 C -0.09 -2.64 8.62 71.24 0.61 -2.03 16 28 H 0.25 4.88 7.80 -4.41 -0.03 4.85 16 29 H 0.09 3.44 6.50 -2.38 -0.02 3.42 16 30 H 0.11 3.89 8.07 -2.39 -0.02 3.87 16 31 H 0.27 16.41 8.31 -92.71 -0.77 15.64 16 32 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.05 2.12 5.28 -2.38 -0.01 2.11 16 35 H 0.12 2.77 8.06 -2.92 -0.02 2.75 16 36 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 38 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 39 H 0.13 2.62 6.56 -2.91 -0.02 2.60 16 40 H 0.10 2.55 7.55 -2.39 -0.02 2.53 16 41 H 0.10 2.39 7.54 -2.39 -0.02 2.37 16 42 H 0.07 2.47 7.45 -2.39 -0.02 2.45 16 Total: -1.00 -82.27 358.52 7.28 -75.00 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.87 Total: 15.29 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 7.14 Total: -3.05 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -2.29 Total: -103.10 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.05 Total: -35.24 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.61 Total: 51.10 kcal Total: -82.27 7.28 -75.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.559 kcal (2) G-P(sol) polarization free energy of solvation -82.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds