Wall clock time and date at job start Tue Mar 31 2020 14:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46999 * 160.98020 * 3 2 1 5 5 C 1.36985 * 119.99680 * 273.83498 * 4 3 2 6 6 H 1.07999 * 119.99723 * 194.37874 * 5 4 3 7 7 C 1.38976 * 119.99985 * 14.65961 * 5 4 3 8 8 N 1.31413 * 120.00013 * 358.25400 * 7 5 4 9 9 Si 1.86793 * 120.00105 * 178.25204 * 7 5 4 10 10 H 1.48504 * 109.47243 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47240 * 119.99760 * 9 7 5 12 12 H 1.48497 * 109.47208 * 240.00021 * 9 7 5 13 13 C 1.34773 * 120.00657 * 93.83478 * 4 3 2 14 14 O 1.21628 * 120.00339 * 184.00995 * 13 4 3 15 15 C 1.47339 * 119.99624 * 4.01074 * 13 4 3 16 16 C 1.41365 * 126.41617 * 307.07334 * 15 13 4 17 17 N 1.30475 * 108.07031 * 179.97438 * 16 15 13 18 18 N 1.39930 * 108.93245 * 0.02562 * 17 16 15 19 19 C 1.40143 * 125.76839 * 180.02562 * 18 17 16 20 20 C 1.38848 * 120.07150 * 42.18766 * 19 18 17 21 21 C 1.38113 * 119.93744 * 179.77227 * 20 19 18 22 22 C 1.38281 * 120.06611 * 0.52948 * 21 20 19 23 23 C 1.50698 * 119.93598 * 179.72385 * 22 21 20 24 24 C 1.38284 * 120.13354 * 359.70329 * 22 21 20 25 25 C 1.38113 * 120.06741 * 0.04243 * 24 22 21 26 26 C 1.34559 * 108.46476 * 359.76281 * 18 17 16 27 27 C 1.50698 * 126.31981 * 180.26472 * 26 18 17 28 28 H 4.40639 * 5.51437 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47873 * 40.97560 * 3 2 1 30 30 H 1.09003 * 109.46994 * 280.97199 * 3 2 1 31 31 H 0.96998 * 120.00177 * 180.02562 * 8 7 5 32 32 H 1.08002 * 125.96902 * 359.94139 * 16 15 13 33 33 H 1.08010 * 120.03116 * 0.02562 * 20 19 18 34 34 H 1.08000 * 119.97185 * 180.25724 * 21 20 19 35 35 H 1.08994 * 109.47385 * 269.98122 * 23 22 21 36 36 H 1.09002 * 109.46962 * 29.97848 * 23 22 21 37 37 H 1.08998 * 109.47065 * 149.97945 * 23 22 21 38 38 H 1.08005 * 119.96671 * 180.02562 * 24 22 21 39 39 H 1.08004 * 120.03380 * 179.97438 * 25 24 22 40 40 H 1.09001 * 109.47561 * 275.14691 * 27 26 18 41 41 H 1.09006 * 109.47014 * 35.15172 * 27 26 18 42 42 H 1.09007 * 109.47233 * 155.14901 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3067 -0.4501 5 6 3.2870 1.5564 -1.7883 6 1 3.8557 2.4142 -2.1158 7 6 2.7059 0.7094 -2.7243 8 7 2.0382 -0.3503 -2.3264 9 14 2.8738 1.0771 -4.5480 10 1 3.6664 2.3194 -4.7316 11 1 3.5627 -0.0540 -5.2196 12 1 1.5252 1.2586 -5.1426 13 6 3.4315 2.2625 0.4522 14 8 3.7664 3.3699 0.0770 15 6 3.3513 1.9658 1.8931 16 6 2.2409 1.4202 2.5771 17 7 2.5581 1.3063 3.8376 18 7 3.8668 1.7669 4.0199 19 6 4.5605 1.8027 5.2370 20 6 4.4772 0.7320 6.1171 21 6 5.1657 0.7682 7.3138 22 6 5.9289 1.8740 7.6408 23 6 6.6741 1.9130 8.9501 24 6 6.0102 2.9439 6.7685 25 6 5.3280 2.9114 5.5680 26 6 4.3487 2.1641 2.8280 27 6 5.7223 2.7241 2.5623 28 1 -1.0502 -0.0004 0.0000 29 1 3.0098 -0.7750 -0.6739 30 1 3.0094 -0.1948 1.0089 31 1 1.6329 -0.9417 -2.9797 32 1 1.2950 1.1461 2.1339 33 1 3.8776 -0.1302 5.8643 34 1 5.1046 -0.0661 7.9969 35 1 6.0373 2.3527 9.7176 36 1 6.9483 0.8993 9.2424 37 1 7.5757 2.5151 8.8372 38 1 6.6074 3.8061 7.0264 39 1 5.3915 3.7475 4.8874 40 1 5.7224 3.7959 2.7605 41 1 6.4465 2.2342 3.2132 42 1 5.9917 2.5472 1.5210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490961511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:44 Heat of formation + Delta-G solvation = 145.012454 kcal Electronic energy + Delta-G solvation = -26417.222978 eV Core-core repulsion = 22752.592516 eV Total energy + Delta-G solvation = -3664.630462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41354 -39.37116 -38.15339 -35.15865 -34.24289 -32.19543 -31.99182 -31.24686 -31.08035 -30.53563 -27.36479 -26.52754 -26.26298 -24.56176 -23.15322 -22.37468 -21.42116 -20.24703 -18.60594 -17.85014 -17.49181 -16.45244 -16.09435 -15.81478 -15.50019 -14.87739 -14.77181 -14.34104 -14.03351 -13.98656 -13.85826 -13.75563 -13.70709 -13.03360 -12.76547 -12.66930 -12.48213 -12.24844 -12.21847 -12.06740 -11.82497 -11.62095 -11.30671 -11.23866 -11.08878 -10.55970 -10.43445 -10.33906 -9.73496 -9.49602 -9.23611 -9.22600 -8.71621 -8.63663 -8.49357 -7.90283 -7.87705 -6.25087 -3.87026 0.79921 1.11845 2.09169 2.53334 2.81426 3.17393 3.26147 3.32420 3.46006 3.85358 3.94163 4.17299 4.21040 4.53580 4.58812 4.70237 4.83885 4.86045 5.05101 5.10854 5.12144 5.21880 5.28813 5.29567 5.45783 5.47209 5.62164 5.66510 5.68943 5.77472 5.92243 5.98851 6.04420 6.10695 6.21806 6.29311 6.32373 6.47788 6.58360 6.85316 7.05264 7.20033 7.33813 7.54740 7.88732 8.05558 8.46372 8.88812 9.13634 9.36929 9.93213 10.67861 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.003069 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.081275 B = 9121.010432 C = 9768.663716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.092 4.092 3 C 0.227 3.773 4 N -0.434 5.434 5 C -0.299 4.299 6 H 0.106 0.894 7 C 0.027 3.973 8 N -0.876 5.876 9 Si 0.931 3.069 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.520 3.480 14 O -0.583 6.583 15 C -0.239 4.239 16 C 0.087 3.913 17 N -0.300 5.300 18 N -0.328 5.328 19 C 0.155 3.845 20 C -0.104 4.104 21 C -0.104 4.104 22 C -0.093 4.093 23 C -0.113 4.113 24 C -0.102 4.102 25 C -0.122 4.122 26 C 0.119 3.881 27 C -0.088 4.088 28 H 0.198 0.802 29 H 0.130 0.870 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.192 0.808 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.432 -0.088 17.961 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.094 4.094 3 C 0.104 3.896 4 N -0.151 5.151 5 C -0.426 4.426 6 H 0.124 0.876 7 C -0.175 4.175 8 N -0.516 5.516 9 Si 0.758 3.242 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.308 3.692 14 O -0.467 6.467 15 C -0.253 4.253 16 C -0.100 4.100 17 N -0.117 5.117 18 N -0.104 5.104 19 C 0.064 3.936 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.093 4.093 23 C -0.170 4.170 24 C -0.121 4.121 25 C -0.142 4.142 26 C -0.007 4.007 27 C -0.146 4.146 28 H 0.215 0.785 29 H 0.148 0.852 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.209 0.791 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.161 -0.070 18.825 20.142 hybrid contribution -0.439 0.168 -1.864 1.923 sum 6.723 0.098 16.961 18.245 Atomic orbital electron populations 1.24256 0.95367 1.02809 1.07751 1.23194 0.94289 0.97767 0.94179 1.18651 0.84194 0.88723 0.98042 1.43598 1.55479 1.10137 1.05886 1.19813 1.30968 1.12129 0.79691 0.87614 1.25345 0.95572 0.95841 1.00726 1.69945 1.34228 1.13604 1.33864 0.85768 0.78063 0.78498 0.81842 1.19259 1.20743 1.20747 1.16942 0.84505 0.84628 0.83111 1.90608 1.53731 1.22046 1.80334 1.20414 0.94885 1.13797 0.96213 1.24351 0.99707 0.95924 0.90028 1.77217 0.92606 1.23028 1.18894 1.45446 1.10799 1.49618 1.04530 1.17427 0.95771 0.95274 0.85164 1.21064 0.99758 0.97521 0.94073 1.20924 0.96892 0.98295 0.96197 1.19999 0.98209 0.94289 0.96824 1.20785 0.99526 1.02826 0.93847 1.20864 0.99666 0.98524 0.93024 1.21144 0.98592 0.96666 0.97825 1.21423 0.96923 0.98029 0.84295 1.20523 0.89006 1.00769 1.04323 0.78514 0.85239 0.92669 0.92103 0.79141 0.84899 0.85252 0.91063 0.91424 0.91408 0.85147 0.84980 0.89921 0.91214 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.96 19.12 29.55 0.57 -5.39 16 2 C -0.09 -2.11 9.40 -37.12 -0.35 -2.46 16 3 C 0.23 5.22 4.79 -6.83 -0.03 5.19 16 4 N -0.43 -11.08 2.59 -119.18 -0.31 -11.39 16 5 C -0.30 -8.12 9.43 -14.98 -0.14 -8.26 16 6 H 0.11 3.00 7.28 -52.49 -0.38 2.61 16 7 C 0.03 0.70 5.37 -17.46 -0.09 0.60 16 8 N -0.88 -22.48 8.14 55.50 0.45 -22.03 16 9 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.52 12.99 7.03 -12.56 -0.09 12.90 16 14 O -0.58 -16.18 16.75 5.25 0.09 -16.09 16 15 C -0.24 -5.06 4.83 -105.05 -0.51 -5.57 16 16 C 0.09 1.72 9.99 -16.94 -0.17 1.55 16 17 N -0.30 -5.61 12.33 30.88 0.38 -5.23 16 18 N -0.33 -5.62 3.67 -6.49 -0.02 -5.64 16 19 C 0.15 2.18 6.09 -83.60 -0.51 1.67 16 20 C -0.10 -1.29 9.84 -39.40 -0.39 -1.68 16 21 C -0.10 -1.01 9.69 -39.61 -0.38 -1.39 16 22 C -0.09 -0.81 5.88 -104.59 -0.62 -1.43 16 23 C -0.11 -0.66 10.01 36.00 0.36 -0.30 16 24 C -0.10 -0.95 9.69 -39.61 -0.38 -1.33 16 25 C -0.12 -1.43 8.56 -39.40 -0.34 -1.76 16 26 C 0.12 2.17 6.82 -81.44 -0.56 1.62 16 27 C -0.09 -1.31 8.64 36.00 0.31 -1.00 16 28 H 0.20 3.41 7.80 -54.08 -0.42 2.99 16 29 H 0.13 3.16 6.12 -51.93 -0.32 2.84 16 30 H 0.06 1.16 5.84 -51.93 -0.30 0.86 16 31 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.19 3.68 6.11 -52.49 -0.32 3.36 16 33 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 39 H 0.13 1.48 6.67 -52.48 -0.35 1.13 16 40 H 0.08 1.11 7.61 -51.93 -0.40 0.72 16 41 H 0.07 0.85 7.53 -51.93 -0.39 0.46 16 42 H 0.09 1.54 7.84 -51.92 -0.41 1.13 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -31.86 359.14 -7.30 -39.15 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.96 Total: 7.27 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.32 Total: -7.03 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.50 Total: -44.30 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.09 Total: -16.09 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.86 -7.30 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.164 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds