Wall clock time and date at job start Tue Mar 31 2020 14:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46999 * 160.98020 * 3 2 1 5 5 C 1.36985 * 119.99680 * 273.83498 * 4 3 2 6 6 H 1.07999 * 119.99723 * 194.37874 * 5 4 3 7 7 C 1.38976 * 119.99985 * 14.65961 * 5 4 3 8 8 N 1.31413 * 120.00013 * 358.25400 * 7 5 4 9 9 Si 1.86793 * 120.00105 * 178.25204 * 7 5 4 10 10 H 1.48504 * 109.47243 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47240 * 119.99760 * 9 7 5 12 12 H 1.48497 * 109.47208 * 240.00021 * 9 7 5 13 13 C 1.34773 * 120.00657 * 93.83478 * 4 3 2 14 14 O 1.21628 * 120.00339 * 184.00995 * 13 4 3 15 15 C 1.47339 * 119.99624 * 4.01074 * 13 4 3 16 16 C 1.41365 * 126.41617 * 307.07334 * 15 13 4 17 17 N 1.30475 * 108.07031 * 179.97438 * 16 15 13 18 18 N 1.39930 * 108.93245 * 0.02562 * 17 16 15 19 19 C 1.40143 * 125.76839 * 180.02562 * 18 17 16 20 20 C 1.38848 * 120.07150 * 42.18766 * 19 18 17 21 21 C 1.38113 * 119.93744 * 179.77227 * 20 19 18 22 22 C 1.38281 * 120.06611 * 0.52948 * 21 20 19 23 23 C 1.50698 * 119.93598 * 179.72385 * 22 21 20 24 24 C 1.38284 * 120.13354 * 359.70329 * 22 21 20 25 25 C 1.38113 * 120.06741 * 0.04243 * 24 22 21 26 26 C 1.34559 * 108.46476 * 359.76281 * 18 17 16 27 27 C 1.50698 * 126.31981 * 180.26472 * 26 18 17 28 28 H 4.40639 * 5.51437 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47873 * 40.97560 * 3 2 1 30 30 H 1.09003 * 109.46994 * 280.97199 * 3 2 1 31 31 H 0.96998 * 120.00177 * 180.02562 * 8 7 5 32 32 H 1.08002 * 125.96902 * 359.94139 * 16 15 13 33 33 H 1.08010 * 120.03116 * 0.02562 * 20 19 18 34 34 H 1.08000 * 119.97185 * 180.25724 * 21 20 19 35 35 H 1.08994 * 109.47385 * 269.98122 * 23 22 21 36 36 H 1.09002 * 109.46962 * 29.97848 * 23 22 21 37 37 H 1.08998 * 109.47065 * 149.97945 * 23 22 21 38 38 H 1.08005 * 119.96671 * 180.02562 * 24 22 21 39 39 H 1.08004 * 120.03380 * 179.97438 * 25 24 22 40 40 H 1.09001 * 109.47561 * 275.14691 * 27 26 18 41 41 H 1.09006 * 109.47014 * 35.15172 * 27 26 18 42 42 H 1.09007 * 109.47233 * 155.14901 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3067 -0.4501 5 6 3.2870 1.5564 -1.7883 6 1 3.8557 2.4142 -2.1158 7 6 2.7059 0.7094 -2.7243 8 7 2.0382 -0.3503 -2.3264 9 14 2.8738 1.0771 -4.5480 10 1 3.6664 2.3194 -4.7316 11 1 3.5627 -0.0540 -5.2196 12 1 1.5252 1.2586 -5.1426 13 6 3.4315 2.2625 0.4522 14 8 3.7664 3.3699 0.0770 15 6 3.3513 1.9658 1.8931 16 6 2.2409 1.4202 2.5771 17 7 2.5581 1.3063 3.8376 18 7 3.8668 1.7669 4.0199 19 6 4.5605 1.8027 5.2370 20 6 4.4772 0.7320 6.1171 21 6 5.1657 0.7682 7.3138 22 6 5.9289 1.8740 7.6408 23 6 6.6741 1.9130 8.9501 24 6 6.0102 2.9439 6.7685 25 6 5.3280 2.9114 5.5680 26 6 4.3487 2.1641 2.8280 27 6 5.7223 2.7241 2.5623 28 1 -1.0502 -0.0004 0.0000 29 1 3.0098 -0.7750 -0.6739 30 1 3.0094 -0.1948 1.0089 31 1 1.6329 -0.9417 -2.9797 32 1 1.2950 1.1461 2.1339 33 1 3.8776 -0.1302 5.8643 34 1 5.1046 -0.0661 7.9969 35 1 6.0373 2.3527 9.7176 36 1 6.9483 0.8993 9.2424 37 1 7.5757 2.5151 8.8372 38 1 6.6074 3.8061 7.0264 39 1 5.3915 3.7475 4.8874 40 1 5.7224 3.7959 2.7605 41 1 6.4465 2.2342 3.2132 42 1 5.9917 2.5472 1.5210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490961511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:43 Heat of formation + Delta-G solvation = 128.163177 kcal Electronic energy + Delta-G solvation = -26417.953617 eV Core-core repulsion = 22752.592516 eV Total energy + Delta-G solvation = -3665.361101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.80142 -40.47657 -39.82445 -37.10900 -35.32244 -33.85724 -33.43016 -33.09131 -31.95240 -31.66827 -28.87986 -28.10454 -27.35201 -26.38698 -24.12028 -23.47807 -22.90456 -21.39528 -20.22547 -19.71323 -18.88886 -18.24999 -17.61885 -16.88902 -16.62795 -16.38097 -16.11564 -15.91564 -15.74450 -15.37952 -14.88207 -14.70668 -14.55497 -14.52960 -14.36116 -14.06624 -13.80843 -13.66778 -13.25430 -13.16610 -13.00341 -12.98536 -12.88719 -12.48513 -12.45891 -12.20712 -12.11798 -11.90392 -11.40194 -11.04033 -10.90672 -10.57719 -10.44603 -10.04694 -9.87710 -9.83376 -9.15896 -8.21928 -5.92816 -0.19490 0.30650 0.79021 1.18960 1.26634 1.41596 1.44779 1.56788 2.08517 2.12184 2.35929 2.42541 2.61290 3.12477 3.23112 3.52868 3.62192 3.83214 3.88393 3.92914 3.97953 3.99378 4.26575 4.33847 4.35739 4.49388 4.51653 4.58105 4.67962 4.78032 4.85299 4.91549 4.95800 5.03013 5.14881 5.19768 5.22115 5.30742 5.40225 5.46018 5.48691 5.58089 5.78193 6.06203 6.13143 6.44014 6.49143 7.13117 7.15714 7.41368 7.98339 8.68240 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.003069 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.081275 B = 9121.010432 C = 9768.663716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.134 4.134 3 C 0.237 3.763 4 N -0.443 5.443 5 C -0.336 4.336 6 H 0.082 0.918 7 C -0.002 4.002 8 N -0.881 5.881 9 Si 0.993 3.007 10 H -0.274 1.274 11 H -0.267 1.267 12 H -0.278 1.278 13 C 0.518 3.482 14 O -0.624 6.624 15 C -0.278 4.278 16 C 0.084 3.916 17 N -0.308 5.308 18 N -0.314 5.314 19 C 0.109 3.891 20 C -0.114 4.114 21 C -0.104 4.104 22 C -0.080 4.080 23 C -0.113 4.113 24 C -0.099 4.099 25 C -0.124 4.124 26 C 0.132 3.868 27 C -0.084 4.084 28 H 0.233 0.767 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.271 0.729 32 H 0.189 0.811 33 H 0.122 0.878 34 H 0.155 0.845 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.161 0.839 39 H 0.134 0.866 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.382 -0.283 20.402 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.136 4.136 3 C 0.115 3.885 4 N -0.160 5.160 5 C -0.464 4.464 6 H 0.100 0.900 7 C -0.203 4.203 8 N -0.520 5.520 9 Si 0.817 3.183 10 H -0.199 1.199 11 H -0.192 1.192 12 H -0.204 1.204 13 C 0.308 3.692 14 O -0.512 6.512 15 C -0.293 4.293 16 C -0.103 4.103 17 N -0.126 5.126 18 N -0.089 5.089 19 C 0.019 3.981 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.081 4.081 23 C -0.170 4.170 24 C -0.117 4.117 25 C -0.144 4.144 26 C 0.003 3.997 27 C -0.142 4.142 28 H 0.250 0.750 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.206 0.794 33 H 0.140 0.860 34 H 0.173 0.827 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.179 0.821 39 H 0.152 0.848 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.101 -0.313 21.317 22.807 hybrid contribution -0.669 0.217 -2.382 2.483 sum 7.432 -0.096 18.936 20.342 Atomic orbital electron populations 1.25111 0.96274 1.00865 1.05831 1.23344 0.94771 0.99543 0.95897 1.18475 0.84850 0.87057 0.98105 1.43756 1.55539 1.11061 1.05626 1.19749 1.32881 1.12583 0.81149 0.90018 1.26046 0.94763 0.95347 1.04168 1.70081 1.33492 1.13431 1.34947 0.84868 0.77961 0.78377 0.77087 1.19889 1.19175 1.20395 1.17417 0.83288 0.83942 0.84584 1.90546 1.55517 1.23583 1.81509 1.20124 0.97020 1.17472 0.94641 1.24212 0.99445 0.96361 0.90258 1.77144 0.93862 1.23408 1.18160 1.45618 1.10075 1.47908 1.05330 1.17855 0.97987 0.97451 0.84814 1.21129 1.00373 0.96908 0.94970 1.21238 0.96056 0.99551 0.95346 1.20452 0.96714 0.93228 0.97676 1.20883 0.99854 1.04121 0.92107 1.21246 0.98985 0.99671 0.91810 1.21284 0.98278 0.95914 0.98917 1.21784 0.97450 0.96365 0.84102 1.20606 0.87858 1.01980 1.03736 0.74998 0.86984 0.91366 0.91786 0.79410 0.85982 0.82693 0.89901 0.90232 0.89954 0.82096 0.84805 0.88194 0.88173 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.89 19.12 74.32 1.42 -9.47 16 2 C -0.13 -6.22 9.40 31.12 0.29 -5.93 16 3 C 0.24 11.41 4.79 84.57 0.41 11.82 16 4 N -0.44 -23.84 2.59 -649.22 -1.68 -25.52 16 5 C -0.34 -19.18 9.43 84.07 0.79 -18.39 16 6 H 0.08 4.94 7.28 -2.91 -0.02 4.92 16 7 C 0.00 -0.10 5.37 84.93 0.46 0.36 16 8 N -0.88 -45.71 8.14 21.67 0.18 -45.53 16 9 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 13 C 0.52 27.36 7.03 86.64 0.61 27.97 16 14 O -0.62 -36.72 16.75 -4.12 -0.07 -36.79 16 15 C -0.28 -12.31 4.83 -20.14 -0.10 -12.41 16 16 C 0.08 3.44 9.99 85.66 0.86 4.30 16 17 N -0.31 -11.76 12.33 -56.21 -0.69 -12.46 16 18 N -0.31 -10.83 3.67 -174.45 -0.64 -11.47 16 19 C 0.11 2.96 6.09 38.10 0.23 3.19 16 20 C -0.11 -2.69 9.84 22.39 0.22 -2.47 16 21 C -0.10 -1.70 9.69 22.25 0.22 -1.48 16 22 C -0.08 -1.10 5.88 -19.84 -0.12 -1.22 16 23 C -0.11 -0.79 10.01 71.24 0.71 -0.08 16 24 C -0.10 -1.48 9.69 22.25 0.22 -1.27 16 25 C -0.12 -2.65 8.56 22.39 0.19 -2.46 16 26 C 0.13 4.90 6.82 42.12 0.29 5.19 16 27 C -0.08 -2.49 8.64 71.24 0.62 -1.88 16 28 H 0.23 7.53 7.80 -4.41 -0.03 7.49 16 29 H 0.11 5.71 6.12 -2.39 -0.01 5.69 16 30 H 0.07 3.03 5.84 -2.39 -0.01 3.01 16 31 H 0.27 13.35 8.31 -92.71 -0.77 12.57 16 32 H 0.19 7.60 6.11 -2.91 -0.02 7.58 16 33 H 0.12 3.07 8.06 -2.91 -0.02 3.04 16 34 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 37 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 38 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.13 2.76 6.67 -2.91 -0.02 2.74 16 40 H 0.10 2.63 7.61 -2.39 -0.02 2.61 16 41 H 0.10 2.33 7.53 -2.38 -0.02 2.31 16 42 H 0.07 2.52 7.84 -2.38 -0.02 2.50 16 Total: -1.00 -72.37 359.14 7.48 -64.89 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 1.05 Total: 26.28 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 7.31 Total: -4.22 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -2.84 Total: -94.98 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.07 Total: -36.79 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -72.37 7.48 -64.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.055 kcal (2) G-P(sol) polarization free energy of solvation -72.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds